cdca7a (cdca7)


Basic Information

Item Value
gene id cdca7a
gene name cdca7
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17527950 ~ 17532256 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818262.1
AAATGAACAGAGAGAGAACtgcctgcagctgcaggacctgatTGTTCTCGGCCGAGCTGCTGCACGGTGCGTTTGTGTCTGCTTTTGTGCGAagattattaaaagaaaaatgccaTCCACCCGCTCCAAGAAACTGGCAGCACAGGCTCCATCTACCAGGATGAGTTTAAGGAGCTTCCGCACCGTCCCTCTGGTTTCCATGGAgacttcctcctcttcctctgatgACAGCTGTGATAGCTTTGGCTCTGATGGAGGCTTTGCAAATACGagGAACAGCTTAAGACAGACGAGGCAGAGGATGGCAGAGAAACCAAAGATGTTTAAGGCTTCATCAGAGGAGGATACATGCAGCGGGTTTGAGGAGAGTGAGATCAACAGCCAGATGAAAGCCATGAAAGTAGACTCTGAACCTCCGAGACGTGGCCGTAGGTCCACCGTCCTGAAGGTTGCCATGACATTCCCCACCAAGAAGACGGGCAAGAAGAGGCCTGCATCCGAACCTTTCCCTCAAATTAAAGTAGAACACTCCGActctgaggaagaggagaactTCATGCACAAGAGAGCCCTGAATATTAAGGAGAACAAAGAAATGctgcAAAAGCTCATGGCAGAGCTGAACAAAGTACCTGGACTCTTCCCAAGACGGATGGCAATGTCTGCATCCACTACGCCTCGACAAGCACCTCGGCGGGCAATGGGAACTCCAAGAGCTTGTAGGAGAAACCCAGAGCGTTTGTCTCGTCCCCACACACGGTCCCGCTCACTGGTGGACGGGCCCCCCAGCCCAACTCCAGAGGAAGAGCCCGAGGACAAGTTTAGTCTGGTTCGCAAAAACCGCTACAGTGAGGACTATGATGAGCCTCCCCGTCGCCGTTTCTTCAGTGGTACCAAGGCCATCCCTCACGTAGTGCGGCctgtggatgacatcacagaggTGGAGCTGCAGAGCATCTGCCACAACGTGCGGGAAAAAGTCTACAACAGCTCCACTGGGTCCACTTGCCACCAGTGCCGCCAGAAAACAATCGACACCAAAACCAACTGCCGTAATCCAGAGTGTGTGGGGGTGAGGGGTCAGTTCTGCGGCCCCTGTCTCCGTAACCGCTACGGAGAGGAGGTCCATGATGCTCTGCTGAATCCAGAGTGGCAGTGCCCGCCATGCAGAGGGATCTGTAACTGCAGCTTCTGTCGGGCCCGAGACGGTCGCTGTGCTACAGGAGTGTTGGTGTACCTGGCTAAATATCATGGATTTGATAATGTGCACGCTTACCTGAAAAGCTTGAAAAAGGAGATGGAAGAAAACAGTGAGTGAATTGTGGAGGAAGGAGCTGGACCTGACTGACATGCTCTGACTATTTTTACCTACCCACAGTCCAAATATTGTTCATGGTGTTTCAAGCATTATACGACAGTGCTTATTGTTgttcctgtttgtgaaatttcaaaaatatttagaattagCTGACATCTGGAAGAGGCACATGCAGCTagttgctttgtttttgtttaacattttcCTGCTTGTTCTGTTTGTGAACTAAAGTGgacaaaaaacatgtttagGACAATCTCTCAACCTTAAATTGTTGACTTGTCCAAACATACCTCTGTGATcttatgtttatgtgtatgttaaGGCAATTGATGTACAtagcatgtaaaaaaagaaatcccttTTTTATAGTTGAATCATCCTCCCTGCTGCAAAAAGTCAGGCTTGATTAGAGCTACTgtattttacattgttttaaatgtacagATTTTACACTGCCCACTCTGACATGAATTGGCCTCCAAGGGATTCATcgttgtgccttttttttttttttttttttttctagttaAATTTATGCTTGTGTTTTTACAAGTTGGTAGCCTTTTGTAAATCTGCTGAAagtgtaaatgtaaaaacaaaacaaaatgtttgctTTAGTTGGGGTGTCCTGTAGAAAGGGTCCAATGAGGAGGTGCAGGTGGAAAGGGCATAGACTCTGGGGTCCACTGACTCTCACTTCTAAACCGAAAGGAACTGTGTGATATACTACAGTGCCTGGTTAAATATCCTTCATTAGATAACTGTCACTAATGGTGTGGAAACAATTAGCACACTCTAATGGGAATCTCATACCTGTAAATCATTTTATCCTGTTAAAGCACATTCTCGCTCTGCTCCAGTCtctttggctcattttctgccTTACACTGTTAAGTAGGAATGGTTGAAGGTGCCACTGAAGTGGCAATAGAGTTATGGCCTGCGTTTTCTGTTCAGAAGTGCGATACTCTACGCAAAATGACATGGAATTAACCTTTGTATCGCTCATCTTTCAAATGTACTTCATTTGACCTGCACCAGGACACACTGATTATATGATACTGTTTCAAAATAATCAACGGTTGAGATGTATTCTTCAGTGTAATGGCAGGTGGAGGTTATATTACTGCTGCTTGTGTTTATCAGGCACTGCACTCTTGACAGCATGAGTAATGCTTACCAGTTGATGGGAATATATGTTATAGTGATGCTTGCTTTGTGTTCATTTGGTTAACTGCACATTTTCATTAAAGCGTTAATCACTGAAAAATCA

Function

symbol description
cdca7 Acts upstream of or within regulation of cell population proliferation. Located in cytosol and nucleoplasm. Implicated in immunodeficiency-centromeric instability-facial anomalies syndrome 3.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23408 CDCA7, JPO1; cell division cycle-associated protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818262.1 True 2594 mRNA 0.45 10 17527950 17532256

Neighbor

gene id symbol gene type direction distance location
zak LOC104965553 coding upstream 1246 17501695 ~ 17526704 (+)
rapgef4a rapgef4,LOC101483582 coding upstream 29866 17465228 ~ 17498084 (+)
pdk1 pdk1,LOC108240758 coding upstream 97056 17424921 ~ 17430894 (+)
itga6a itga6 coding upstream 106596 17402757 ~ 17421354 (+)
dlx1a dlx1 coding upstream 147899 17377198 ~ 17380051 (+)
sp9 sp9 coding downstream 100472 17632728 ~ 17634939 (+)
scrn3 scrn3,LOC102796247 coding downstream 111082 17643338 ~ 17648252 (+)
hoxd12a hoxd12 coding downstream 335606 17867862 ~ 17870159 (+)
hoxd11a hoxd11 coding downstream 341426 17873682 ~ 17878153 (+)
hoxd9a hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463 coding downstream 350210 17882466 ~ 17884616 (+)
G124671 NA non-coding upstream 29191 17469748 ~ 17498759 (+)
G124661 NA non-coding upstream 90131 17437361 ~ 17437819 (+)
G124631 NA non-coding upstream 265124 17261737 ~ 17262826 (+)
G124627 tlk1,LOC102777640 non-coding upstream 270448 17256842 ~ 17257502 (+)
LOC120570569 NA non-coding upstream 516038 17010145 ~ 17011912 (+)
LOC120569550 NA non-coding downstream 72889 17605145 ~ 17614067 (+)
G124794 chrna1 non-coding downstream 132416 17664672 ~ 17666075 (+)
G124797 chn1,LOC102233772 non-coding downstream 139999 17672255 ~ 17674455 (+)
G124804 NA non-coding downstream 155315 17687571 ~ 17687814 (+)
G124816 atp5g3,LOC102234286 non-coding downstream 197800 17730056 ~ 17733251 (+)
myo3b myo3b other upstream 329360 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 504390 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1426308 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 1550076 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1866936 15618514 ~ 15661014 (+)
hoxd10a hoxd10,LOC102792757 other downstream 327904 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 478501 18010757 ~ 18017413 (+)
G125079 NA other downstream 1170772 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 1286497 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1557162 19089418 ~ 19090785 (+)

Expression


Co-expression Network