xrcc5 (xrcc5)


Basic Information

Item Value
gene id xrcc5
gene name xrcc5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15216368 ~ 15223240 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818293.1
ACATTTCATTCCACGGACTCGTCTTAAACTCAAGAACACCTCAAATGACATGATCGCAGTTTGGTACAGTTGGGAGTATGTTTCGGTGAATAGTTTTTATCCGGAGCCATAACAGAGTGACACCCAATCTTtgaaagagggaaaagagaagATGGCAGGTGCCAAAtCAGCATTGGTGTTGTGCATGGATGTTGGGTTCTCCATGTCCAACTCTGGCCCGGGCGAAGAGCCTCCCTTTGAACTTGCCAAAAAAGTAATCCAGAAGTTTGTCCAGCGCCAGGTTTTTGCAGAGACCAAGGATGAGCTGGCGTTAGTTCTGTTTGGGACAGACTCCACCAAGAACTCACTGGACAAGGATGACCAGTACCAGAACATCACTGTGCATCGTCACCTTATGGTGCCTGATTTTGAGCTTCTGGAGGAAATAGAAAATCAGATCCATCCAGAGAGTCAGCAGGCTGATTGGCTGGATGCTCTTGTTGTGTGTATGGATCTTCTTCAGACTGAAACAAAGGAAAAGAAGTGTGATCGTCTCAACATTGTCCTCTTGACTGACCTGAACACTGAGGCCAACTCAGAGCAGCTGGACGTTATTATTGAAAACCTGAAACAAGCTGGCATCACCCTGCAGTTTTTTTTGCCTTTCCCTGCGGGGGACGATGAAGAGGGTGGAGGAGATGCGGACGGAAGAGACCCTGGTCAGCCGGGCACAGGCAAAGGTCTGTCCAAGGAACAGAAGAGTGGCCTAGACATGGTGAAACACATCATGCTAAGCCTGGATGAGGAGGACGGCCTGGGAGAAATTTACTCCTTCAGAAAAGCAATTGAGCAGCTGTGCATGTTCAAGCGCATCGAGAGGAGACCTATGGCCTGGCCCTGTCAGCTGACCATCGGCAGCTGTCTGCCCATCCGTATTGTTGGATACAAAGCAGTGACAGAAGAGAAACTGAAGAAAACCTGGACTACAGTTGACGCTCAAACCAACCAGAAAGACGACGTGAAGAGAGAGACTGTCTACTGTCTGGATGATGACAATGAGACAGAGGTGCAGAAGGATGATACTATCCAAGGTTTTCGTTATGGAAGTGATATTGTTCCCTTCTCCAAAGTAGATCAAGACCAGATGAAATACAAACATGATGGGAAGTGCTTTGCTGTTCTCGGCTTCTCCAAACAGAGCATGGTACAGCGCCATCAGTTCATGGGGACTCAAGTCATCAAGATATTTTCTGCCAAGGATGATGAGCATGCAGGAGTTGCGCTGTCCGCTCTCATCCGAGCGCTAGATGAACTCAACATGGTGGCCATTGTACGTTACGCCTATGACCGGCGCAGCAACCCTCAAGTAGGAGCAGCCTTCCCGTGCATCAAGCGGGACTATGAGTGTCTGATGTACGTCCAGCTGCCCTTCATGGAAGACCTCAGACAGTTCACATTTCCTTCTCTTGCAAACAACAAAAAGTTCACTCCATCAGACACTCAGCTGTCTGCTGTTGACTCTCTTATTGACTCCATGATGTTGGTAGAGGGGGATGATCAAAAGGACATATTCAAGATCCACCACATTCCCAACCCTGCCTTCCAGAGGCACTTCCAGTGTCTGCATCATCGGGCAGTAAGCCCTGGCACCCCTCTTCCCCCCATGGAGCCATGGCTGAAGGCTGCTCTTGAGCGCCCTGATGTCATTAGTGAACGTTGCCAGGCTCCACTAGAGGAGATAAAGAGGAAGTTTCCTCTGACAGAAgtggagaagaaaaagaagctcAAGACTAGTGCTCAGATTTTTGGCAAAGACTCCGAGGAGCCAGATGCCAAGAAGGCAAAAGgagatgaagaagaggaggagtatAGTCTGGCTGACATTGCTGAAGGCTCTGTGACTTCGGTGGGAAGCGTGGATCCAGCCAGAGACTTCCGTACTCTGATAAGGAAGAAGAGTCTTCCATTTGGAGAGGTATGTCAGCAACTGACTCGCAGGATAGAGCAGTTGCTTAGCaacaagaacacacactacTACATGAAAAGCATCACCTGTATCCAGGCTTTTAGAGAGCAGTCCGTTAAGCTGGGGGATGCCAATCTGTACAATGGCTACCTCCAGTCCCTAAAAAGAAGCATTCCAAACAGAGGGCTGGAGGTCTTCTGGGACCTGCTTGTTCAAGATGCCATCACTCTGATCAGTAAGGACGAGGTTGAAGGAAGCACTGTATCCAAAAACGAAGCTAATCAGGTGACTCCCCTATTTAAACCAGTGTGA

Function

symbol description
xrcc5 Predicted to enable telomeric DNA binding activity. Predicted to contribute to double-stranded DNA binding activity. Acts upstream of or within intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; negative regulation of apoptotic process; and response to ionizing radiation. Predicted to be located in nucleus. Predicted to be part of Ku70:Ku80 complex. Is expressed in several structures, including blastomere; central nervous system; cloaca; presumptive neural retina; and pronephric duct. Human ortholog(s) of this gene implicated in chronic obstructive pulmonary disease and multiple myeloma. Orthologous to human XRCC5 (X-ray repair cross complementing 5).

NR:

description
X-ray repair cross-complementing protein 5

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0043564 Ku70 cellular_component
GO:0042162 telomeric DNA binding molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10885 XRCC5, KU80, G22P2; ATP-dependent DNA helicase 2 subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818293.1 True 2257 mRNA 0.49 20 15216368 15223240

Neighbor

gene id symbol gene type direction distance location
tmem169b tmem169,LOC103361546,LOC102780762 coding upstream 637 15210721 ~ 15215731 (+)
pfkla pfkl coding upstream 8667 15197169 ~ 15207701 (+)
si:ch211-45c16.2 map3k13 coding upstream 20149 15160313 ~ 15196219 (+)
LOC120569630 fam126b,LOC104961134 coding upstream 80675 15086370 ~ 15135693 (+)
prmt2 prmt2 coding upstream 246091 14962270 ~ 14970277 (+)
smarcal1 smarcal1 coding downstream 40884 15264124 ~ 15276183 (+)
tmem41aa tmem41a,LOC103374480 coding downstream 121811 15345051 ~ 15348808 (+)
ankzf1 ankzf1 coding downstream 197562 15420802 ~ 15426678 (+)
myo10l3 LOC103370188 coding downstream 220214 15443454 ~ 15500197 (+)
pttg1ipb LOC104944099,LOC103370189 coding downstream 278877 15502117 ~ 15505588 (+)
G123967 NA non-coding upstream 135222 15079454 ~ 15081146 (+)
G123931 NA non-coding upstream 201070 15013151 ~ 15015298 (+)
G123930 dip2a non-coding upstream 204932 15010978 ~ 15011436 (+)
G123911 NA non-coding upstream 260827 14951084 ~ 14955541 (+)
G123907 NA non-coding upstream 280959 14935196 ~ 14935409 (+)
G123989 NA non-coding downstream 2845 15226085 ~ 15231683 (+)
LOC120569306 NA non-coding downstream 19958 15243198 ~ 15249829 (+)
LOC120569294 NA non-coding downstream 192168 15415408 ~ 15416204 (+)
G124150 NA non-coding downstream 313295 15536535 ~ 15567461 (+)
LOC120570206 NA non-coding downstream 492366 15715606 ~ 15739958 (+)
trpm2 trpm2 other upstream 57431 15137587 ~ 15158937 (+)
si:dkeyp-118h9.7 LOC102200331 other upstream 222534 14976595 ~ 14993834 (+)
G123742 NA other upstream 982298 14233332 ~ 14234070 (+)
cps1 cps1 other upstream 1520034 13635554 ~ 13696334 (+)
G123633 NA other upstream 1862283 13353306 ~ 13354085 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other downstream 283744 15506984 ~ 15573848 (+)
galnt13 galnt13,LOC102796746 other downstream 395274 15618514 ~ 15661014 (+)
LOC120570321 NA other downstream 747742 15970982 ~ 15977874 (+)
dap1b dapl1 other downstream 876031 16099271 ~ 16101642 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 1764831 16988071 ~ 17023560 (+)

Expression


Co-expression Network