rpgra


Basic Information

Item Value
gene id rpgra
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20795717 ~ 20809233 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818302.1
TAATTATTCTCTTACGATTGTGGACAGATTTTGGACAGATTTGGAGTCTTACTTTTTTGAACCCACCAACTTTATCTACTCCTTTAACCTTAAAGATATAATCTGTTTCTACGATAATTCAGCTAAAGGTCAACTTGCCCCCCTGACCCTCTCTGACGTCTACCTAAATCcatctgtcagtcagtctgCACCGAGCCACACGGTGCAGGGGAGAGGGATAGCAGTGGAGATGACAGGACAGGACGATGTGGACATACCCGAAACAGGAGCCATCTTCACATTTGGAAAGAGCAGTTTTGCTGACAATGTGCCTAGTAAATTCTGGTTGAAGAATGATCAGCCGGTACACCTATCTTGTGGAGGAGAGCACACTGCTGTCATCACAGAAAATGGCAGGCTGCTCATGTTTGGTGGTAATACTTGGGGCCAACTGGGCCTTGGATTCAAGCCTGCTGCCAGCAAACCTGCCTCTGTGAAATCCTTGAAGTCTGTGAATGTGAAGCTTGTAGCTTGTGGGAGAGATCACACAATCATCTGCACATGGCAGGGTAGTGTGTTTGTTGCTGGCAGTAACCAGGAGGGGCAGCTCGGTTTGGGCCACTGCAACAACACTACATCCTTTCACCTGCTGCATCCCTTCTGTGACCATGcaccaatcaaaatgctttCTGCAGGATGCAACACCTCAGCTGCCTTAACAGAGGACGGGAGACTGTTCATGTGGGGAGACAACGCCGTGGGTCAGATTGGTTTGGGGGACGATGGGTTTGCAGCAGAACCCAGAGAGGTGGATGTTAGGGAAGCAGTGCTATGGGTCTCCTGTGGGTACCACCACTCAGCATTTGTCACAGTGGATGGAGATCTCTACACGTTTGGAGAGAGTGCGAATGGACGGCTTGGTCTCCAGGTGGAGCAGCTGGCCAATCACAGAGTCCCTCAGCGGGTGCAAGGGATTCTGGGTCGTGTCACCCAAGTGTGCTGTGGAGGGGAGCACACTGTGGCACTCACAGAGGAGAACATGTACACGTTTGGCAGAGGTCAGTACGGTCAGCTGGGCCATGGGACATTTCTGTTTGAAGTTGATTTGCCAAAACCACTGGAGCACTTTTGTAACAGCAGCATCAAACATATCGCCTGTGGAGAAAACCACACCGCTGTCATCACAAAAAGTGGGTTTCTCTACACATTTGGTGATGGTCGTCATGGGAAACTGGGTTTAGGGGAGGAGAACTTCATTAACCAGTTCAGCCCGACACTCTGCACACGTTTTGTCAAGTACAATGTTCAATTAGTGTCCTGTGGTGGTAACCACATGCTGGTACTGGCTACACCCAGACCACCAGAGAGCCAAGAAGTGGTGCCAGAAGAGGATGTCACAATCACAGAGAACGTTTTGGAGCCAATTTACACAGAAATTATCCCGCTGGACCCTTTGATTGATCCTAATCCACTGGTCCCACTCTCGGCCCTCTCTGCTCGAGCCCGGCATAGAGATAAAGGAAGCTCTGTGGAGCTGTTTGGGAAGATGTTTCAGAACCTCCCACGTCTAAATTCTGACTTCCTCAACACCTCCTGGCAAAGATCCAGAAATATCTCAACCCCTAAAACACTCTCAAAGGACTTTACTACTCCTTCCTCATCCCCCAAACCACAATCAGAAGCAACACTAAGCCCACCACTCTCCCCCAGATCTCCAGTGTTACCCTCTAAGCCATCGAGCCCACGTTCTCAATCATCAAACACCTTTCAGAATAAATCCTCTACAGCTGCTTCTTTTAAGTCTAAATCCAAAGAGCTGCCTTCTCCCTTACTGTCACCAAAGTTCATAACAAAACATAACACCCCAGTATCTCCTAAACGGActgcaaaaaaaagaatgtataGAACCACTAAAAAAGCCTTAATTGAAGAAGCTCCTCTATCACCTAAAGAGCCCTGCAGTCCCACCAGACCCTCCAGTGATATTTCAAAGAAACATCTCAGTGAGGAAGAGCATCCTGCCTCGCCACAAACAGAGAGAGAAACTATTCAGAGCCAAATTGTCATAGAAGAGTTGGAGGAGAAAGGAGTCGACTCTGACTTTTTGCCAAATGTGgaaaagaagaaaggccGAGCTCTTAGAAGAACTACGAAAGAGGCAGAGTTGTTTGCCAAACGGCTCCAGTTCAATGGGAAGGCAGAACAAAATTCTCTTAAGGCCTCACCCACAGAGCTCCTGAAAGGCTctttaaagaaagaaatatcGCCACTGAAGAGCTTAAAGAGTCTGAAAAACACATCTAAAAAGGTTACATCTAAAGGCAAAGAGAACATCACCAAGCAGTCCAATAAAATCAAAACTCATGAGGATGGAATAGCTCGAAAGAAAACCTCCCATTTGGAATCACCAAAACTATTAGCATCAAGTCCAAGAACTCCACAATCTGTCCGGAAGACACCGACACAGCAGAGACTGGCGGCTGCactgaaggaaaatgacaaaagaaacagaaatgtGAAAGAAAGTATTATAAACCAAGAGGATATGAAAGCCAGCgctttaaaagaaaacttcATTGGGACACTGAAACAGGAGGAAAATAAATCATCTGCTTTGGACAAGACATCTTCTGTTATGAAGGTCACTACAGGAAATGAAACAACCAGCATATCTGTCCAGAGGGGAAGTTCGTTATCAGTAGAAAAATATGAAGAGATCCAGAGTGAAACCATTGACGCCAAACCTGTTGAAGTCCAGATGCAACGGGAGTCACAGCAATTCATATCGACTCCAACAAAAGATTTTCACAAGGTTGAATCAGCACCGGGAAGAGgtcaaaataagaaaaaagaaaccacACCCGCCTCCACACCTGCTCAGGTTGATACTAAGAAATCCCAAAGTGTGAAATCCATACCTGTGAAAGTTAAAGGGAAACCAAAAGAGGTCAAATCCACACTAGTCAAAAATCCAAGTAAAGGTGCAAGAAATACTCCAGttaaaagtgaaagtaaagtaaaagttgtGGAAAATGAGTTAAACAAAGCTCAAAAAATGAAAGGTAGAACTGCAGATAAGCAGAAGATACCTGAAGGTGACAGTGCTGAAGTAAAGGACCAAAAGAAGGCAAAAGAATCTAAACtgaaggaaaaaacaaaaccagGGGGAGACGAAGGGGATGAAATCAGAGTTAAAGGAGAAGCTGACTCTGAAGATATTACGAGGGCCAAGCCAAGGAGTAAGCAGACTGAAGTTTCCGCACCTATTGAAGTTCTGTGTAACCCCATCTCCTCTCAAAGCACTCAGAGAAAAGAAGTGATTCCTGTCAGTGGTGCCAAATCCCCACAAGGCCCCAAACCTGTTGATAGGGATCTGCTTGTTTCTGAAACACATAGAGAGGATGCTCAGAGCCTGACTGAAGAGAAGCCAATGTGGGGGGAGATCCTCAGTACCGCAGCCGCTCTTCTTCCTGTTGTTGGAATAGCAGGTACAGCTATGAAAGGCCTTAGCGATGCAGTGACAAACATAGGGGGTTTCCAGTCTGACAGTGACACAGTTACCTCTACACCACCCAAAACACCCAGTCGAGTGAAGCAATTCACAAAACAGAGTGCAGTTATGCAACCTTCCTTTTCCTCGACATTGTCACATTTTTCTTCAACAGAGGCGTCAAATCCAGCAGaaggaaacacacagaaagatgTTCAGGTCAAGAAGAATGTAGTTCAAGAAGAACGTAATGATACCCTTCAGTCACAACAGGGGGTGGTGAAAAGTGACGGGAGTGAAGACACTTCCCAGCAAGAACATAAAGAAGATAAGAAAACCTACAAGGATCATAAGGGAGGAGAAACAGATACTGAAGATGAGGAAAAGAAGACAAATGAAGAGAGTGGAAGCCATGTGGAAGGCAAAgaagaagatgaggaggagggaagtgAAAGTAGCGATGACTTAGAGGAGGAAAAAGACAGTGTTTCTGTagatggagaggaagagcaagatAATGAACTTGCAGAGGAAGATGGTGAGGAGGAAGGAAGTAGTGAGAAGAGTGATGTCACAGAGgctgaagaggaggaagaagaaagcAGTGAggaaacaggtggaggaggaagtgagtCTGAGGTAAGTGAGGAAGCAGAGGAGGGAAGTGAAAGTGAGGAAGAgaataaagaagaagaggaagaaagtgAGGTGAGtgaggatgaagatgatgaaAGTGGCCAAGAGTCAGGGAGCAGCAGGAGCAAAGagtcagaggaggaggacagagacGGAGGTGACACTGCAGAGTCGGactctgaagaagaagaaagtgagTTGAGTGAGGATGACGATGATGAAAGTGGCCAAGAGTCGGGGAGCAGCAGGAGCAAAGagtcagaggaggaggacagagacGAAGGTGACACTGCAGAGTCGGActctgaagaagaaaaaagtgagGTTGATGCAGAGGAAGAGGGTGAaatggaggaagaaaaagatTCCACTGAGAAAGActcagaagaagatgaagaaacaGATGATAGTGAAGGGGAGGAAGATGAGGAACAGGATGAAGTGAGTGTTGaaaatgaggaagaggaagacagTGAGCCCGATGAAGATGAGGAAGAGCAAGATGAAAAGAGTGATAAAGAAAATGAGGAGGAGGGTGAAGAGGGTGAGGAAGAAGTGTCTTTAGATGAGGGGGAAGCTGAGGACGAGACTGCAGAGGAGGAACAagagggtgaggaggaagaagaagagagtaAGGAGGAggtaggagaggaggaagaagaagagagtaTGGAGGAggtaggagaggaggaagaagaagagagtaAGGAGGAggtaggagaggaggaagaagaagagagtaTGGAGGAggtaggagaggaggaagaagaagagagtaAGGAGGAggtaggagaggaggaagaagaagagagtaaggaggaggaaggagaggaggaggaagaagagagtaAGGAGGaggtaggagaggaggaggaagaagagagtaAGGAGGaggtaggagaggaggaggaagaagagagtaAGGAGGaggtaggagaggaggaggaagaagagagtaAGGAGGaggtaggagaggaggaggaagaagagggtgcggaggaggaggaagaagaggataaGGAGATtacagaggaggaagaagaagaagaggaagagggtgaggaggaggtagcagaggaggaaggagaagaagaggaagagagtgaaggtgaggaggagaaaaaaataaagagaaaagaggaaagtaTTGTGGCTAATAAAAAGGAGATGGAAGAgagtgatgaggaggaggaggaaggaggtggggaggaagaggagaatgaAACAAAGATTAAACCAAAAATAGAGGGAAGACTCAAAAATCAGAGAgaagaaacaaaacagaaacaaccTAAAGGAAAGAAAGATTCTGAGGGAAATGAAGATGAGGAGAGCGAGGAAGAAGCTAACGAAGTAGGtaaagaagaggagggagaagaggaggagaaggaagaagaaggagaggaAAAAGACAAACAACAGAAAGAAGCACCCAAACCAGCACCCAAACCAGCACCCAAACCAGCACCGAGGACAAAGCAGAGTGCTGGAGTGAAGAAACAAGATGACTCTCAGCAGTTCTGGAACAACGTTCTACCTCAGTACCTCGACCTGCAGTGA

Function

NR:

description
PREDICTED: trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818302.1 True 5665 mRNA 0.46 15 20795717 20809233

Neighbor

gene id symbol gene type direction distance location
srpx srpx,LOC102777533 coding downstream 3470 20775078 ~ 20792247 (-)
LOC120569295 grpr,LOC103352898,LOC100697445,LOC101071331,LOC101471274,LOC102795360 coding downstream 75954 20715586 ~ 20719763 (-)
LOC120569729 LOC103352860,LOC100709268 coding downstream 130833 20649268 ~ 20664884 (-)
u2af1 LOC103352857,LOC103391595 coding downstream 159112 20630090 ~ 20636605 (-)
cbsb NA coding downstream 184056 20589788 ~ 20611661 (-)
dcaf6 NA coding upstream 15541 20824774 ~ 20850992 (-)
rpl24 rpl24 coding upstream 51981 20861214 ~ 20865558 (-)
LOC120570677 NA coding upstream 54552 20863785 ~ 20863953 (-)
me3 me3,LOC103391678,LOC107389821 coding upstream 76416 20885649 ~ 20899445 (-)
ildr1b NA coding upstream 91741 20900974 ~ 20908154 (-)
G125784 NA non-coding downstream 36492 20757707 ~ 20759225 (-)
G125720 NA non-coding downstream 82568 20710865 ~ 20713149 (-)
G125708 NA non-coding downstream 98477 20691897 ~ 20697240 (-)
G125703 NA non-coding downstream 108804 20686696 ~ 20686913 (-)
G125701 NA non-coding downstream 111307 20683895 ~ 20684410 (-)
G125800 NA non-coding upstream 50366 20859599 ~ 20859991 (-)
G125839 NA non-coding upstream 101337 20910570 ~ 20910806 (-)
G125845 NA non-coding upstream 143699 20952932 ~ 20953578 (-)
G125848 NA non-coding upstream 164999 20974232 ~ 20976915 (-)
G125852 NA non-coding upstream 187259 20996492 ~ 20998787 (-)
LOC120570047 dynlt3 other downstream 57397 20734550 ~ 20738320 (-)
G125620 col4a2 other downstream 328532 20464109 ~ 20467185 (-)
G125619 col4a2 other downstream 334088 20459162 ~ 20461629 (-)
si:ch211-214p13.7 NA other downstream 871982 19921268 ~ 19923735 (-)
LOC120570223 NA other downstream 999497 19790052 ~ 19796220 (-)
G125842 NA other upstream 144428 20953661 ~ 20960064 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other upstream 169768 20979001 ~ 20986633 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other upstream 301954 21111187 ~ 21149005 (-)
ecrg4a Augurin-B,LOC103352889 other upstream 383675 21192908 ~ 21198088 (-)
c12h2orf49 NA other upstream 467689 21276922 ~ 21279859 (-)

Expression


Co-expression Network