XLOC_004759 (hoxb8b)


Basic Information

Item Value
gene id XLOC_004759
gene name hoxb8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27117609 ~ 27120171 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009416
CGGGGACCGTCACTAAGGAGTCATGTGGGTGCAGCTACGGATACATTTGTTTGCATGAATATTTACGACATTTTACGCATATAATTTCCACCTGGATGAATTCGTTTTTATTGCAATAGCAGGCCTCAAGCAACATAATTTATCTAGAGATTTCTTTATCTCAACACTGATTGCCAAAGTTTCACCGGGGAGTTGATCTTTCAAGCAATGAGTTCCTACTTCGTCAATTCCCTCTTCACTAAATTTAAAGGAGGCGATTCTCTGCGCTCCAACTACTATGACTGCCCAAGCTACACGCCGGATCTTGGAGGCAGACCATCTGTGCTGTACGGTCACAACACAGGATCTGCGTTTCAGCACGCGGCTCAGTTCCCGGATTTCTACCACCACGGTACATCATCATTCCCCCACGCGTCTTACCAGCAGACCCCGTGCGCAGTTGCGTACCCTGGAGATGCCACGGGAAACATCTTGGGCCAGGACGGTTTACAGAAACAGTCGTTCTTTGGCGCGCCAGATTCGGATTTTACGCAGTTTGGGGATTGTAATTTAAAGGTCAGCGGTATCAGGGATGATCTGGAGAGTGCAGAACCGTGCACAGCGCAACTCTTCCCATGGATGAGACCACAAGCTACCGGACGGAGGAGGGGCAGGCAGACCTACAGCCGCTACCAGACGTTGGAGCTGGAGAAGGAGTTCCTATTCAATCCTTACCTGACCCGTAAGCGGCGCATCGAAGTGTCTCACGCACTGGCCCTCACTGAGAGGCAGGTAAAGATCTGGTTCCAGAACAGGCGTATGAAGTGGAAAAAAGAACACAACAAAGACAAGTTTCCCAGCAGCAAAGCAGAACAAGAAGAaattgagagagagaggcaaGAGGGGAGCCAGGTGTCAGAAAAACACACATCTGGAGAAGAGGACTCGGAGGCATCTAGCAATTCTAAATAGTCTTTTGACTATAAAAACATCACAATCGATcaacttcaattaaataaaagtcTGAAGTTCAAAAACGTTCGTCGACATGCAAAGGCTGTTGCATCATGTATTCAATTTATTGCAAACTTATGAGGCATTTATGTTTAC

Function

symbol description
hoxb8b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in central nervous system and paraxial mesoderm. Orthologous to human HOXB8 (homeobox B8).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-291 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in central nervous system and paraxial mesoderm. Orthologous to human HOXB8 (homeobox B8).

Ensembl:

ensembl_id ENSDARG00000054025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009416 True 1089 mRNA 0.47 2 27117609 27120171

Neighbor

gene id symbol gene type direction distance location
XLOC_004758 ttll6 coding upstream 2197 27096835 ~ 27115412 (+)
XLOC_004757 srcap coding upstream 25323 27061720 ~ 27092286 (+)
XLOC_004756 fbrs coding upstream 56273 27034594 ~ 27061336 (+)
XLOC_004755 msl1b coding upstream 88801 27021979 ~ 27028808 (+)
XLOC_004753 znf438 coding upstream 152611 26877381 ~ 26964998 (+)
XLOC_004760 hoxb6b coding downstream 6968 27127139 ~ 27128768 (+)
XLOC_004761 hoxb5b coding downstream 9488 27129659 ~ 27131735 (+)
XLOC_004762 dre-mir-10a coding downstream 14698 27134869 ~ 27134967 (+)
XLOC_004763 hoxb1b coding downstream 20969 27141140 ~ 27142834 (+)
XLOC_004764 skap1 coding downstream 36772 27156943 ~ 27206904 (+)
XLOC_004754 BX469896.1 non-coding upstream 220993 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 283417 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 425558 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 524311 26589644 ~ 26593298 (+)
XLOC_004744 NA non-coding upstream 625636 26489353 ~ 26491973 (+)
XLOC_004777 NA non-coding downstream 1256859 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1497530 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1813353 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1893402 29013573 ~ 29013690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location