LOC120570238 (cldn10,LOC103391834,LOC104947506)


Basic Information

Item Value
gene id LOC120570238
gene name cldn10,LOC103391834,LOC104947506
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18606426 ~ 18608814 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818474.1
CACATTAACTATCAATCGCAGCCTATCCATTGAACTTAGTACATAGTGCAGAACATAGCTACATTTTCAACAAGCCTTACTAGCCAAGGAACCATTATCAATTCCAGGTCTCACAAACTTAATTGGCCGTCACACCGTGTGGAGGAGTCCTCTTTGCAGAATGAGCAGCATGTCTCAGGAGATCTTGGCCTTTTTATTTAGCACTTCGGGATGGGTGCTGGTGTCTTCCACCTTGCCGATGGAATACTGGGAGGTATCTTCAAATGATGGATCAGTCATCACCACAGCTACATTCTATTCCAATCTTTGGAAGACCTGCGTCATTGATTCAACTGGAGTGTCTAACTGCAAAGACTTTCCCTCGTTGCTGGCACTGAATGGCTACATCCAAGCATGCAGGGGATTGATGATTGCAGCCGTCTGTCTGGGTTTTTTTGGTTCTATATTTGCCCTTGTTGGAATGAAATGCACCAAACTTGGAGgaactgacaaaaacaaagcCAGTATTGCTTGCTTTGCAGGTGTAATTTTCCTTCTTAGTGGCCTCTGCTCACTTTCATCATGCTCCCTCTATGCACACCGGATAACAACAGAGTTTTTTGACCCAATGTTTTATGACCAGAAGTATGAACTGGGAGCTGCGCTTTTTATCGGCTGGGCAGGTTCTATCCTCTGTATCCTCGGAGGCAGCGTGCTCTGCTTCTCCATTACAGGTTCTTTTACCAAAAGCCACAGTCGAGCAAACTATATCTACAAAGGTGCTGTCTCACATTCTCATATCTCCTCCCGCCCAAGAGGGCAGGCACAGTCTGTAAACCAGAGGCCACCTCCTGACTGCAGCAACTCCTCCAGGATTCAGCACTTTGATaagaatgtgtatgtgtgaggtaTATGAATATAAAACACTTTTAGTCAAAGCCACTGGTGAGTCTTAAAAGATACAGTACACTGTATGAAAGTTGGTGGTTTTGTCTAACAGTAGCAGAATTTCCTGATTTTAATGTGTGGCTCACCAAGAATTAAGTTTGgaatatttgaatgtttttctatttaaaaGGTCTGAATTTAAAGTTGTGTGATGCAGTTTACTCTCTAATGTAGGgggatttttattttctataaagCAGACAACTTCTGTATTTGGCAGTTCTACATATTACTGTGCACTGAATGCTCAgattatgtatgtattatgaTTAAACAGCTCAATCAAAAACATAATTCTTCCGAAATGGGCCTTTCTGATGTAATTTTTACAtaagtttccattttttttttatgtatgtggcAATTAAGTGTGTAATATTTTGTAAGACATTTCCTTTGTTGATTGAatctttaaagcgcccatattatgctcattttcaggttcataactgtattttaaggttgtaccagaataggt
>XM_039818477.1
CACATTAACTATCAATCGCAGCCTATCCATTGAACTTAGTACATAGTGCAGAACATAGCTACATTTTCAACAAGCCTTACTAGCCAAGGAACCATTATCAATTCCAGGTCTCACAAACTTAATTGGCCGTCACACCGTGTGGAGGAGTCCTCTTTGCAGAATGAGCAGCATGTCTCAGGAGATCTTGGCCTTTTTATTTAGCACTTCGGGATGGGTGCTGGTGTCTTCCACCTTGCCGATGGAATACTGGGAGGTATCTTCAAATGATGGATCAGTCATCACCACAGCTACATTCTATTCCAATCTTTGGAAGACCTGCGTCATTGATTCAACTGGAGTGTCTAACTGCAAAGACTTTCCCTCGTTGCTGGCACTGAATGGCCTCTGCTCACTTTCATCATGCTCCCTCTATGCACACCGGATAACAACAGAGTTTTTTGACCCAATGTTTTATGACCAGAAGTATGAACTGGGAGCTGCGCTTTTTATCGGCTGGGCAGGTTCTATCCTCTGTATCCTCGGAGGCAGCGTGCTCTGCTTCTCCATTACAGGTTCTTTTACCAAAAGCCACAGTCGAGCAAACTATATCTACAAAGGTGCTGTCTCACATTCTCATATCTCCTCCCGCCCAAGAGGGCAGGCACAGTCTGTAAACCAGAGGCCACCTCCTGACTGCAGCAACTCCTCCAGGATTCAGCACTTTGATaagaatgtgtatgtgtgaggtaTATGAATATAAAACACTTTTAGTCAAAGCCACTGGTGAGTCTTAAAAGATACAGTACACTGTATGAAAGTTGGTGGTTTTGTCTAACAGTAGCAGAATTTCCTGATTTTAATGTGTGGCTCACCAAGAATTAAGTTTGgaatatttgaatgtttttctatttaaaaGGTCTGAATTTAAAGTTGTGTGATGCAGTTTACTCTCTAATGTAGGgggatttttattttctataaagCAGACAACTTCTGTATTTGGCAGTTCTACATATTACTGTGCACTGAATGCTCAgattatgtatgtattatgaTTAAACAGCTCAATCAAAAACATAATTCTTCCGAAATGGGCCTTTCTGATGTAATTTTTACAtaagtttccattttttttttatgtatgtggcAATTAAGTGTGTAATATTTTGTAAGACATTTCCTTTGTTGATTGAatctttaaagcgcccatattatgctcattttcaggttcataactgtattttaaggttgtaccagaataggt

Function

symbol description
cldn10 Predicted to enable identical protein binding activity. Involved in regulation of ion transport. Located in plasma membrane.

NR:

description
PREDICTED: claudin-10-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818474.1 True 1405 mRNA 0.40 5 18606426 18608814
XM_039818477.1 False 1243 mRNA 0.40 4 18606426 18608814

Neighbor

gene id symbol gene type direction distance location
LOC120570204 NA coding downstream 1255 18603123 ~ 18605171 (-)
LOC120569518 LOC101478235,LOC102203487,LOC102783581,LOC104922687,LOC104947508 coding downstream 5044 18599472 ~ 18601382 (-)
dnajc3a dnajc3 coding downstream 7971 18581236 ~ 18598455 (-)
hs6st3b hs6st3,LOC101476457 coding downstream 70988 18466925 ~ 18535438 (-)
LOC120569776 mbnl2,LOC104947512,LOC102785098,LOC101474989,LOC104922684,LOC107389970,LOC102200241 coding downstream 147309 18442534 ~ 18459117 (-)
gpc6b gpc6,LOC104947503 coding upstream 95874 18704688 ~ 18789294 (-)
slitrk5b slitrk5,LOC100690770 coding upstream 240475 18849289 ~ 18852790 (-)
LOC120569248 LOC102780588,LOC100690496,LOC101481378,LOC102206814,LOC103352953 coding upstream 264249 18873063 ~ 18885787 (-)
pcdh8 LOC104947529,LOC103352945 coding upstream 289862 18898676 ~ 18903097 (-)
ednrbb LOC103352943,LOC104947527 coding upstream 334537 18943351 ~ 18947075 (-)
LOC120569840 NA non-coding downstream 394470 18208738 ~ 18211956 (-)
G125000 NA non-coding downstream 513896 18092327 ~ 18092530 (-)
G124872 NA non-coding downstream 582949 18022409 ~ 18023477 (-)
LOC120569506 NA non-coding downstream 783939 17737284 ~ 17822487 (-)
G124691 NA non-coding downstream 1255680 17347911 ~ 17350746 (-)
LOC120570508 NA non-coding upstream 207032 18815846 ~ 18819321 (-)
G125108 NA non-coding upstream 218728 18827542 ~ 18828502 (-)
G125112 NA non-coding upstream 235286 18844100 ~ 18844338 (-)
G125113 NA non-coding upstream 235732 18844546 ~ 18845295 (-)
G125116 NA non-coding upstream 237018 18845832 ~ 18847369 (-)
prkra prkra other downstream 442677 18156732 ~ 18163749 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 491329 18113110 ~ 18115097 (-)
fastkd1 fastkd1,LOC102780871 other downstream 1564054 17035373 ~ 17042372 (-)
LOC120570068 LOC103362129,LOC101485094 other downstream 2216532 16381250 ~ 16389894 (-)
gcgb gcg other downstream 2225661 16378488 ~ 16380765 (-)
G125089 dct,LOC102781940 other upstream 86666 18695480 ~ 18699802 (-)
G125090 NA other upstream 92073 18700887 ~ 18704677 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 623173 19231987 ~ 19258846 (-)
G125326 dopey2 other upstream 987115 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 1142887 19751701 ~ 19768586 (-)

Expression


Co-expression Network