LOC120570242 (LOC104953981)


Basic Information

Item Value
gene id LOC120570242
gene name LOC104953981
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19517979 ~ 19521172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818483.1
AACAGGCAGAGCAACAAGCCAGACTGTCACTTACTGAAGGATGTAATGTGCACCTGACACCATGACGGACAGGGAGGAGGACGAGCGGGGCTGCAGAGCTTTTTCGCCCACGTCCGATCTTCAGCACTTTAATTCGACTGAACTGCATCAAAACCAAGACAGCATGGAGGCTGAAGGGGAGATAACTTTATGTGAGATTCAGTTGGCTCAGTTTTTTTTGAATGTGCAAGGATCTTTCCCAGTCTGAGGTCAGAAACATGATGCTCAGTCCTGACCAGCCTGAGTCTGACCTGCCCTGGGGACAAGGTGACAGAGAGACCCTTCTGGACACTTTCAATGTGCAGTGTGGGTCCATGCCAGCCAAACCTGAGGATGGAGAGGGCAAGGCACGCTCCGTGCACGTGCCCGCCCTCAGCAGGGAAGAGAAGAGGCGGAGGAGGCGCGCGACAGCTAAATATCGATCCGCACATGCCACCAGGGAACGTGTGCGCGTAGTGGCCTTCAACCTGGCCTTTGCAGAGCTGAGAAAACTGCTCCCAACACTCCCACCAGACAAGAAGTTGTCTAAAATTGAGATCCTGCGACTCGCAATTTGTTACATCTCCTACCTCAACCACGTGCTGGATGTTTAGGCTGTGAGGACCAACAGGAGTATGGACTGAGGCAGGAGGACTGTTTGTATGACAGCTGAATGATTTCTTGATATTGATACCAGAAAATTTGAGGAATGCCCTGTATATGGTTGGTTATGCAACACACTGTAGATTACAGTGTATCCTAGTTTTTGGAATATCACAATGATTGTTCATCATGGGAAACAGTTGCAGGACTTCAGGTTTAATGTCAGTAAAAGCATGAAAAGAATGCAAATATTTTAAAAGCTGCTGTATATTATATTTCTTTAGCCAAACTACTAAAACATTGCAATGATCAACCTTAAATTTGCTGCCTTGTCTTTAGTTGTGACTTAATGTTTGCACCAAtttgtaaatatatttaattcaattacacaaaaaaatgtcTACTGGACATTTGTGTGCTTTAAATAAATTGTGACAGCTCAAGATATTCAAGAAACATGTTTGATGCTGTTTTGATGCCAGTTATGTTACAATTTCTCTGAACCAAGACGTTTCTGATCTGATCTGTTGGCCGTATTAGATTTTATCTTAGAATGTGACTTCTGAaagctctttttttatttcaagtaAAACCATTAAGAGACGCTACCAAACAAGCTGTTCCTCCACTACATGGGAGAGGTCTTGGTATTTGTTGGGGTTTCTCTCCCTCTGGATGGGGCAGATGTTTCTCCAGAACCAAAACAACCATGTTATGGCCATCCGTCTGCTTCCTCTCTGGGGACATACATACAAATGAGGCAGTAATGTGAACATAAACAAGAAATTCTAgtactcatattatgctttttggctttttccctttcttttcattgtcttatatatcttttttgtgcacgttataggtttacaagtgaaaaatcccaaagtccaccccaaagggacatcttccagagaaaacactgctcACAAATGCTCCAAACAGCtttattgtagtccagcctttacttccgtgacgaacgtgcgtcactttg

Function

NR:

description
PREDICTED: helix-loop-helix protein 2-like

GO: NA

KEGG:

id description
K09075 NHLH, HEN, NSCL; nescient helix-loop-helix protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818483.1 True 1615 mRNA 0.43 2 19517979 19521172

Neighbor

gene id symbol gene type direction distance location
LOC120569695 NA coding upstream 152555 19357001 ~ 19365424 (+)
LOC120570608 anos1,LOC104963477 coding upstream 205912 19272248 ~ 19312067 (+)
gpr143 gpr143,LOC102798521 coding upstream 286087 19224122 ~ 19231892 (+)
mospd2 mospd2 coding upstream 306148 19195968 ~ 19211831 (+)
glra2 glra2,LOC102799111 coding upstream 331971 19173947 ~ 19186008 (+)
LOC120570493 LOC103352916,LOC101468313,LOC102795746,LOC102303625,LOC100708288 coding downstream 3578 19524750 ~ 19549653 (+)
dop1b dopey2 coding downstream 62947 19584119 ~ 19605296 (+)
morc3a NA coding downstream 88935 19610107 ~ 19622078 (+)
chaf1b chaf1b coding downstream 103180 19624352 ~ 19636001 (+)
si:dkey-229b18.3 NA coding downstream 116714 19637886 ~ 19645910 (+)
G125266 NA non-coding upstream 49189 19467432 ~ 19468790 (+)
G125115 NA non-coding upstream 662949 18852566 ~ 18855030 (+)
G125114 slitrk5,LOC100690770 non-coding upstream 666184 18845407 ~ 18851795 (+)
G125110 NA non-coding upstream 688071 18829619 ~ 18829908 (+)
G125109 NA non-coding upstream 688453 18828933 ~ 18829526 (+)
G125274 NA non-coding downstream 30186 19551358 ~ 19551941 (+)
G125369 NA non-coding downstream 226894 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding downstream 270837 19792009 ~ 19801958 (+)
G125397 NA non-coding downstream 378062 19899234 ~ 19899437 (+)
G125465 NA non-coding downstream 386415 19907587 ~ 19907822 (+)
igsf3 LOC103352919,LOC104967650 other upstream 58705 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 427194 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 690432 18818753 ~ 18827547 (+)
G125079 NA other upstream 813451 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 1500566 18010757 ~ 18017413 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 447188 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 632683 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 971006 20492178 ~ 20521274 (+)
mpc2b mpc2 other downstream 1331917 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 1338980 20860152 ~ 20865442 (+)

Expression


Co-expression Network