tbr1b (tbr1)


Basic Information

Item Value
gene id tbr1b
gene name tbr1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16337209 ~ 16341623 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818487.1
GGCTTCTTATTGAGCTATGCAAGTCGAGAATTGCATCTCGCAAGCGAGTGATCTCTCCAAGAAATTTATGAATGTGGGCAGTGGCTTTTCGAGCTCCGATGGATCAGAGCTTTCATTGCAGGACCATCCTATTATATCTGCAAGTGACAACCTGGAGAGAAGTTCACCTCTGAAAAAAAACTCTAGGGAGATGACGAATCAGTCAGAGGCAGACAATTTTCCCGACTCCAAGGACGCATCAGGGGACGTCCAGAGGGGTAAACTCTCTCCTGGTCTTCACGGAGTCTCTGACATCCGTCATAATTTCGATGGATCTGCAGGAGAAAGGTGCATCTTTTCTCCATCTACCCAGCCACAGTCAGTCTCAGCAGCGACCAGTGCCATGTTTCCTTACCCGACCCAGCATGGACCAGCGCACCCGGCTTTTTCTATTGGCAGTCCCAGCCGTTATATGGCCCATCACCCGGTCATAACTAATGGAGCTTACAACAGCCTTCTGACCAACACTTCTCCTCAAGGCTACCCGGCAGCAGGCTACCCTTACGCGCAACAGTATGGACACACGTACAACGGAGGGGCTTTTTACCAGTTCTCCACGGCGCAAGCAGGACTCGTTCCGGGGAAAGCGCAGGTGTATCTGTGCAACAGGGCCCTGTGGCTGAAGTTTCACAGACACCAAACAGAGATGATCATCACAAAGCAAGGACGACGAATGTTCCCATTTTTAAGCTTCAACATTTCTGGCCTTGACCCAACTGCTCACTACAATATATTTGTGGATGTAATACTTGCTGATCCAAATCACTGGCGATTTCAAGGAGGCAAGTGGGTGCCATGTGGAAAAGCAGACACAAATGTAATAGGAAATAGGGTTTATATGCACCCGGACTCACCAAATACCGGAGCGCACTGGATGCGTCAAGAAATATCATTTGGAAAGCTAAAGCTTACAAACAACAAAGGTGCCTCCAACAACACGGGGCAGATGGTGGTTCTCCAGTCTCTCCATAAGTACCAGCCCAGGCTCCATGTGGTTGAAGTAAACGAGGATGGGACAGAGGACACCAGCCAACCAGGAAGAGTCCAGACTTTCACCTTCACAGAAACGCAATTCATCGCCGTCACAGCTTACCAGAATACCGATATTACGCAACTGAAAATCGACCACAATCCGTTTGCTAAAGGATTTCGGGACAACTATGACACTGTCTACACAGGCTGCGACATTGACCGCCTAACTCCATCACCGGGTGACTCTCCGCGTTCACAGATCGTGCCGGGTGCGAGATATGCCATGCCTAGCTCTTTCCTGCAGGACCAATTTGTCAGCACTTATGCCAAATCTCGCTTTCACCCTGGCGTGGGGACTGGTCCTGGCACGGAGCGCAGCGTCCCACTCGGCAACAGCTTGCTGTCCCCGCAGCAAACCGACGAGCCCACTGTTGCCACCCCCCCGCAGCGATGGTTTGTCACCCCTGCCAACAACCGACTGGACTTTGCTGCCTCGGCATACGACGCCGCTGATTTCGCCGGTAACGCGGCCACCTTGCTGTCCTACGCAGCGGCCGGAGTGAAGGCTCTTCCCCTGCCGACTGCAGGCTGCTCCAACCGGGCTCTTGGCTATTACGCCGACCCGTCAGGCTGGGGAGGACGCACACCGCCGCAATACTGTGGCGTAAACAGCAAATCCAGTTCGGTCTTTTCCTGCTGGCACGCTAACTCTATCGGGGGCAGAGCGGGCACCAACTACCTGGCTGAGGAGGGAGACTCCATCCCGACAGAGAGGTCACCGATCGGCGGCTCGGAGGAGACCAAACCCAAAGACATGACATCTGAGTCGAGCTGGATAGAGACGCCGTCCTCCATTAAGTCCATTGATTCGAGCGACTCTGGTATCTTTGAACAGGCCAAAAGGAGAAGAATCTCACCTTCTGCCACGCCGGTTTCAGAGACAGTGTCCCCGTTAAAATCTGAGCTGCTGGCACCGAGAGAGTGTGAGAAAAACTGCACAAAGGACATTGGTTATTACAGTTTCTATCCTCacagttaaaaacaacaaaatgtgaatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcttatacAAATTAATAAAGATGAAAAGGACTTCTTCACAGTTAATGGCCAAAGTGTAAATTCTTCCATGGCTTGGGCGCCTTGTTTCCAGAAAACACTGTAATTGTGAATATAATGTACATAATATTGAACATTTGGTGATAGTGATTGGATGTACACAGAATAGATTAAATCCGATTCATAAATAGAGTAGTGTTTTAAAAAGCTCTTCTGTTGAGTAGCCTAAACTGTTAGTAAAGAAAGATATCGAGAATCTTGTAAATGAAATGTTCTTGTGTAGCATATGCTGGCATATTAATCCctgtcagtgaaaaaaaaaatgtattttgtactTCATCAAAGCTGTAGGCTTCCAACAGTTTATGACGACCACTGCTATGATACCTGTGGCACAGAAGTGATAAATGTTGGTAATGTAGACGTTTAGagtcttttatttctttttttatttcagcctGTTATTTTCCATAGCCTGTAGGCCTATGCTATGCTGTTGTGAAAATCTCTGTATCTGCTGTAATGTGAGTGAAA

Function

symbol description
tbr1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleus. Implicated in autistic disorder.

NR:

description
PREDICTED: T-box brain protein 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10174 TBR1; T-box brain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818487.1 True 2702 mRNA 0.48 6 16337209 16341623

Neighbor

gene id symbol gene type direction distance location
tank tank coding upstream 14431 16317374 ~ 16322778 (+)
tanc1b tanc1,LOC101475961 coding upstream 129618 16105436 ~ 16207591 (+)
LOC120570318 NA coding upstream 240872 16013565 ~ 16096337 (+)
upp2 upp2 coding upstream 356310 15978286 ~ 15980899 (+)
LOC120570324 NA coding upstream 427357 15902687 ~ 15909852 (+)
slc4a10b slc4a10 coding downstream 2412 16344035 ~ 16377228 (+)
scn1laa LOC103371728,LOC103392165,LOC101464243 coding downstream 318358 16659981 ~ 16685486 (+)
ttc21b ttc21b coding downstream 348894 16690517 ~ 16703295 (+)
galnt3 galnt3,LOC102786846 coding downstream 362526 16704149 ~ 16712678 (+)
xirp2b xirp2,LOC102308033,LOC104949804 coding downstream 416023 16757646 ~ 16775305 (+)
LOC120569637 NA non-coding upstream 26568 16304763 ~ 16310641 (+)
G124325 cd302 non-coding upstream 51922 16280944 ~ 16285287 (+)
G124323 NA non-coding upstream 56331 16280599 ~ 16280878 (+)
G124229 NA non-coding upstream 424781 15912215 ~ 15912428 (+)
LOC120569337 NA non-coding upstream 446203 15888137 ~ 15891006 (+)
G124339 NA non-coding downstream 39624 16381247 ~ 16381693 (+)
G124371 kcnh7 non-coding downstream 72986 16414609 ~ 16416452 (+)
LOC120570498 NA non-coding downstream 126417 16468040 ~ 16468636 (+)
G124408 NA non-coding downstream 255085 16596708 ~ 16630114 (+)
G124407 cobll1 non-coding downstream 257020 16598643 ~ 16632341 (+)
dap1b dapl1 other upstream 235567 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 359335 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 676195 15618514 ~ 15661014 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other upstream 763361 15506984 ~ 15573848 (+)
trpm2 trpm2 other upstream 1178272 15137587 ~ 15158937 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 646448 16988071 ~ 17023560 (+)
myo3b myo3b other downstream 786258 17127881 ~ 17198590 (+)
hoxd10a hoxd10,LOC102792757 other downstream 1518537 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 1669134 18010757 ~ 18017413 (+)
G125079 NA other downstream 2361405 18703028 ~ 18704528 (+)

Expression


Co-expression Network