pou1f1 (pou1f1)


Basic Information

Item Value
gene id pou1f1
gene name pou1f1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 13037824 ~ 13048644 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818492.1
CACTAGCTTACCTGCATCTGTaatagagaaaaagagacagggaCATGCATTGCAGAGGCCTTAATGAGAGAAAGCTCGATAGTTGAGAAACACCTTTGAGAAGACAGATCAGTGATAGTAACTTGAACCGGAACCTCATCGCTATTCATCTTTGAGTTCTGGCTGAAGTGCTGACATCTATGTCTCTTAGAGAGAAAAAGGTAACCGTTCACAGTTTTCTACCTGCAAATTCCCAAGTGACTGAAGGGAGAACTGTGCTTGGCTGAATTAGGGAGAAAAAGAACAAGCAAGGAAGACGACACAAGAAGTGAACGACGACAAGACACGGCTAGAAAAAGACAAGGCAGAACAAGAGAAGGCCAAAGAAGACGAGACAAAGACAAAAGGCAAGACGAGGTAAGACAGGCCATAACAAGACACAAGaaaggaagggaagggaagagATTTCAAGAggacgagaaaaaaaaagacacaggaCAAGGAAAGCAACGATGGGAGGCAAGACCAATTAAAGCAAGAGAGGGCAAAGCAAAGAAAGGAAACCAGTTAAGGGATCACGTCAAACTTCAGTGTACCACTGGGACCATTCGAGAGAGGCCAGAGAAGAATGGCATGCCAGGCATTCAGCGCAGACTCCTTCACCCCACTTTCAGGCGATTCACCCTTGCCAATCCTCATGCACCACGCCTCTCCCGGTGACTGCCTGCCAGCCAGCTCCCATGCTCACAGCATGGTTTCTGCAGTATCATCTGGACTGTCCCTGGgtcagcccaccaagcgctccCACATGCATCTGTCCACATCCTCCTTCGGCAACGCCCCCCCCGGCCTACATTACCCAGTCACCCCCTGTCACTACAGCAACCAGCAGGCCACCTACGGCATGATGGCAGctcAGGAGATGCTCTCTGCCAGTATTTCTCAGACTCGTATTCTGCAGACATGTGGTGTCCCTCACCCCAACATGGTAGGCAGTGCAAACCCATTGCAAGggtCTCTTACTCCTTGCTTGTACAAGTTTCCAGACCATGGTCTAAGTAGTGGTTCGTGTGCACTAAGCCATAGTTTCTCCACACTGCCCCCGGCCCTCCTCTCCACTGATGAGGCCCCCGGGGGCCCGAGTATTGGAGAGATGAAAACTGATGGCCAGGGGAAGAGCATGCGGGACCCGGAAGATGTCCCTGCCATGGACTCCCCGCAGATACGAGAGTTGGAGATGTTTGCCAATGACTTCAAAATACGGAGGATCAAACTTGGCTACACACAGACTAATGTAGGCGAGGCTCTTGCTGCAGTGCACGGCTCAGAGTTCAGCCAGACCACAATCTGCCGCTTTGAAAATCTACAGCTGAGCTTTAAGAACGCCTGCAAACTCAAGGCCATTCTGGCTAAATGGCTTGACGAAGCTGAGCTGGCTGGTgCCTTGTACAGTGATAAAATAGGAATGAATGAGcggaagaggaaaaggagaacAACTATCAGCTTGGGAGCTAAGGAGGCTCTGGAGCACAGCTTTGTGGAAAAGATTAAGCCATCCTCCCAGGAAATAGCCCGGATAGCTAAAGGCCTCCATTTGGAGAAGGAGGTGGTCAGAGTTTGGTTCTGCAACAGACGCCAAAGAGAGAAACGGGTCAAAACCAGCCTCAACCTCAGCTCCTGTTTGACCAAACTCAGCCCACACTGCATCGTACAGATGAGTAAAACACAACGACCAATGACATAGTTACATATTCAGCTAGTGTCGCTCACCTCGATTCTGATGGAGCCTCCTTCGTGACCACAGCCAGTGAAAATGGGTTATTTCTAAATCAAATGTCTGTCAGAAATCACTCCACCATTAAGTGGCAGAATTTAATCGACAGGGAACACCCAATAATAAAAACTGCCCTCACACTGCATTAAGCAGCTGCTGACGCACTTGAAACTATTGCATTGCTTTAACAATGAGATGATAACTTATATCCTGTGAAGGTCAGCCTGACCAAAAAAACAACTGAGAACACTCCAACTCTAAGAAAACATGCGTTATTGTCAGCTTGTAACTTGACCTTCTTGCAATGTGCTGCGGTTTTCTTAATGccatttttatgttgttgttttttcttattTACATGAACAGAAATGTCTTTACAGTATTTTAATTTACAAGTCCCAGAAAACTCCACGATAAAAAAGTATATGAATGCCAAATAGCAGCTCAGTAAgccagtttatttttatttattttttaagttgacACTGTGAAGATAAACGGCTTTCATTAACCACTTATGATCTGCTGGTTTGACGCTGCAGCGACCATGACCTGACATTTAGCTCTTCACTGTGCCTTGCCTTGTGCAAACCAAATTAAATGTAATCTATCAGCACCAGCGTGCAGGTGAGCACTCGTTTAGATCAGCCCTGTGCCTTTCTAAAAACAGATGTTGGCTCAACTTTCGtcccttttttttaagagaGAAGGGAAACTTTATTGTCGAttaaatgttttacatttgtCTGCATTTAACTGCAGGACGTTTTGTGTTGTagttgtttgtgtatttgtgattAGAGCTGATGCTCTCTCATTAATTAACTGTCTTGTGAattgtttttgatttatttaaattaatataGCCATgctcaaaaaaagtaatatatttAAAG

Function

symbol description
pou1f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate specification. Predicted to be located in nucleus. Is expressed in adenohypophyseal placode; adenohypophysis; brain; and hypophysis. Human ortholog(s) of this gene implicated in panhypopituitarism and pituitary gland disease. Orthologous to human POU1F1 (POU class 1 homeobox 1).

NR:

description
pituitary-specific positive transcription factor 1

GO: NA

KEGG:

id description
K09363 POU1F, PIT1; POU domain transcription factor, class 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818492.1 True 2649 mRNA 0.46 7 13037824 13048644

Neighbor

gene id symbol gene type direction distance location
zgc:152951 LOC103359009,LOC100698576 coding upstream 90278 12936975 ~ 12947546 (+)
stx19 stx19 coding upstream 405355 12625974 ~ 12632469 (+)
LOC120570413 fbxo47,LOC102789634 coding upstream 776567 12253104 ~ 12261257 (+)
tmem223 NA coding upstream 852218 12184466 ~ 12185606 (+)
LOC120570655 LOC103353985 coding upstream 924561 12060670 ~ 12113263 (+)
vgll3 vgll3 coding downstream 28094 13076738 ~ 13079755 (+)
LOC120570582 ccdc138 coding downstream 56585 13105229 ~ 13121650 (+)
LOC120570402 sh3rf3 coding downstream 128693 13177337 ~ 13270891 (+)
sowahca sowahc,LOC103375467 coding downstream 239695 13288339 ~ 13293576 (+)
akap17a akap17a coding downstream 247614 13296258 ~ 13303665 (+)
G123505 NA non-coding upstream 176001 12861554 ~ 12861823 (+)
G123494 LOC106676347,LOC106675345,LOC106676371 non-coding upstream 360412 12677109 ~ 12677412 (+)
G123493 NA non-coding upstream 361698 12675926 ~ 12676126 (+)
G123491 NA non-coding upstream 373353 12664001 ~ 12664471 (+)
G123479 NA non-coding upstream 434217 12603396 ~ 12603607 (+)
G123634 NA non-coding downstream 323704 13372348 ~ 13377140 (+)
G123714 NA non-coding downstream 665566 13714210 ~ 13715962 (+)
G123721 NA non-coding downstream 721035 13769679 ~ 13769942 (+)
G123725 NA non-coding downstream 845636 13894280 ~ 13896128 (+)
G123731 NA non-coding downstream 1113038 14161682 ~ 14162642 (+)
serp2 NA other upstream 1024624 12007657 ~ 12013200 (+)
LOC120570060 NA other upstream 1777182 11251917 ~ 11260642 (+)
lrp1bb lrp1b,LOC102779748 other upstream 2419128 10335991 ~ 10618696 (+)
umps umps other upstream 3108933 9920624 ~ 9928891 (+)
G122846 NA other upstream 4241078 8795453 ~ 8796746 (+)
G123539 sept10,LOC102785043,LOC103375466 other downstream 1114 13049758 ~ 13279866 (+)
G123633 NA other downstream 304662 13353306 ~ 13354085 (+)
cps1 cps1 other downstream 586910 13635554 ~ 13696334 (+)
G123742 NA other downstream 1184688 14233332 ~ 14234070 (+)
si:dkeyp-118h9.7 LOC102200331 other downstream 1927951 14976595 ~ 14993834 (+)

Expression


Co-expression Network