smarcal1 (smarcal1)


Basic Information

Item Value
gene id smarcal1
gene name smarcal1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15264124 ~ 15276183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818520.1
TTATACGTCACTTCCTGCGCGGCAGAACAACCAGCTAGCAAATTGTCAATTAGCTTAAGATGTGTCGCCCTGCTTCGTTCGTACAAACTTTGCCGTCTTTAGATCACACTGTTGTTCATCTGCTCTTCCATGAATGAATACCAATTTCTGTCTAAAACCGCTGTCGATTAATTGCTATGCTTATGTTGGTAAGTTTTACTGACGCCGCCAACGCTAGCAACGTTAGCTGGCACAGTTGATGTTAGCAGGAGAGGCTGCAGTAACGTTACAAGTTTACGAACTTTTAGGATAACGATAATTGTACTGCTAAAGCTAGTCCAGATGGGTTGACATGGATCACTTGCTTGTAGGTAACTAGATGTTAGGCCATCCCGGAGTGTGACTGATAATCATTTGAATTTGTGAATGAGTCTGAGGTAACGTTAGCGAGTAACGATAGTTGCAGAAAAGTTCATCATCATGTCTAATCAGCTGACTGCAGAGCAGCAGCGAAAGATTGAGGAAAACAGACGGAGGGCTTTGGAGAGAAGAGCCCAAAGACTTGGACAGACTATTAGCAGCGATACCCAGACCTCGTCAGGCCTCAGCAGTACTTCAGTgcaggtaacgttacagcccTCGAAACAGAGCGTTACCTCGGATCATGCTACCCTGGCTCAACACACATCTTCTGCACCAAAACGGTTTGTCCCGCCCTTCAAAAAAGACTCCCCTAGCTTCAATAACTACAAGCAAGGCCCAAAGCAGCAGCAGTTATCTGCTACTAGCAACCAAATCAACCAGAGTAACTATGCTTCTACGAGACAGATCCAAGTCATTGACCCACTTCCTCAGACAAGAAATCAACATGTGAGCAGCCCTGTCCTGTCTAGTGGAGGAAACTTTGGTGTGCCACAGCCTGTTCACCCCAAACCTAACCTCACCTCCAACAGCTCTGGTGGTGCAGTAGGCCCTTTCTACAAGCAAACTAGTAAACCTGCCCAAAGTCCTGCGGCACAGCTGCCCTCCAACTCATCAACTTCGAATGCTGTACCTGCAAAAAAGCCTGTCATCTCTGTAAGAGGAAAATGTGCAGCTCACACAGAGGGCCGCTTCAGAGTAGAAGTGGGGTACCACACAGAGCTGATTGCTGTTTTTAAATCCATCCCCTCAAAGAACTATGACCCTGCCATAAAGATGTGGAACTTCAGCCTGGAGGACTATCACCAGCTAATGGCGGAAGCAGCTGCTATTGCCTCTGTGTCTTTGAGGCCTCTGGAGGGAATGGAGGCAGTGGACGTCGCAGCAGCCACCAGCCGAGCTCGTGACGGTGTGGCACTGGGGGCGCTGCTGAAGCTGTGTAACGGCTGGCAGAAACCTGGAGCCACTTTGCGGGGCCAGTGCGTCCTGGTGTCTCCGACAAAGTTTGAGGTTGATGTCGGTTACCATGTCGACGTCATTGCAGCATTCAAGCAGATGCCGACAAAGAACTATGACATGAAAACAAGAAAGTGGAGCTTTTCAATTGAGGATTACAAGGGACTCTTGGATCTCCTCGGTGGGATAGCAGCAGTGGAGGTGGAGCCTCTGCCCAGGGCAGTAGTCCAGGCTTTCTCTTCCAGGTTTGACGGGACTGAAGCCAGGTCTTTAGATGTCCCTGAAGCAGACCTCTCCAGCATCGACACCTCGCTCACCTGCAGCCTCATGCCCTTCCAGAGGGAGGGAGTCAATTTTGCGGTGTCTAAACAAGGCCGTCTCCTCCTGGCAGATGACATGGGTCTGGGAAAGACGGTGCAGGCCATCTGTATAGCAGCCTACTACAGGTCCGAGTGGCCCTTGCTGGTGGTGGCTCCCTCCTCTGTGCGATTCACCTGGGCCGAGGCCTTCAGACGCTGGCTCCCCTCCCTGAGTCCTGACCGCATCAACGTGGTGGTGAAGGCCAAAGACAATCTGCGTTCTGGTTTGGTCAACATCATCAGCTACGACCTGCTGAGCAGGATGGACAAGCAGCAGCCAGGAAACCCCTTCAATGTTCTCATCATGGATGAGTCTCACTTTCTGAAGAACATGAAGACTGCTCGTTTTAAAGCAGCCTTGCCTCTGCTGAAGGCAGCAAAGAGAGTGATTCTTCTGTCTGGGACCCCTGCAATGTCCAGACCCTCTGAGCTCTACACCCAGATTCTGGCTGTCAGACCTACACTCTTCCCTCGCTTCCATGAGTTTGGGATGCGCTACTGCGGTGCCACACAGTCGCCTTGGGGGTGGGACTACTCAGGCTCATCTAACCTTGGGGAGTTGAAGCTGTTGCTGGAAGAGTGTCTGATGTTGCGCCGCCTTAAGCGCGACGTCCTCTCTCAGCTTCCTGCTAAACAACGCAAAGTCGTCACAGTGACCATAGATGGTATCAACACCCGCCTGAAAGCTGCCCTGTCAGCTGCTGCCAAGCAGTTGGTCAGTGAACACAGCAATaaaaagaaagagaaggaagccCTCCTCATCTTTTATAACCACACAGCTGAAGCCAAGCTGCAAGCCATTATGGAGTACATCACAGACATGCTGGAGTGTGGGAGGGAGAAGTTTCTAGTGTTCGCCCATCATAAGTTAGTCCTGGATCATATCATCACTGAACTAGTAAAAAAGAATGTCAGTCACATCCGTATTGATGGGTCCACTCCTTCAGCTGAACGGCAGCAGCTGTGTGACAAGTTCCAGTACTCGACTAAGACCTGTGTGGCTGTGCTGTCCATCACTGCAGCTAACATGGGTCTCACCCTGCACTCAGCTGACCTGGTGGTCTTCGCTGAGCTTTTCTGGAACCCCGGGATTCTCGTTCAGGCAGAGGATAGGGTGCACCGTATTGGACAAACCAGCAATGTGAACATTCACTACCTGGTTGCCAAGGGAACAGCTGATGATCACCTGTGGCCAATGATCCAGGAAAAAATGAATGTCTTGGAGCAAGTGGGTCTGTCTGAGTCAAACCTCTCAGACAAAGCGGTGAACGCCAGCTTCCACTCTAAGgacccTAACCAGAGGAGCATCATGGAGATGTTCCAGAGGTCTTTCACTGCAGATGACGACATAGATGAAGTCCTCTTATTGGAGGCTGCGAACGACTGGGAGGACACCCCGCCTGAAAACAGTTCTGGTTAACACCATGGTGTGGTTGGACAAAGCCACGGCAAAAGAAGCATCAAAGACAATTTCAGCTGATGACTGAACCTTTCCATGTTGACAAATTATATTAACATTACTCTGTTTTGCAAGTCCCAGTTCCCAGTTTTTTGCCTATCAtgactaaatgtattttatttttaaaagcttACAAATATATGGAAGCCTATTTACAAttctgtaagtcattgtaaTTGGAAACTTTCTCAAACAAATGACTTACTTAAATCgaaataatgacttagtatctcaaaataatgagaaacGCTCAAAGATAATGACATAGTATTTCAAGAATTCTTAAAATGAGtatctcaaaaaaataaaaagttcttGAAAATTGCATAGGCTTATGTGTTACTTTGAAAGTTTcccattattttgagatactaagtcattattttgagaaagtTTGTCATGACTTACGTAAGTTTTAaacctgtgtttttcttttactggCGGAAATGGGCTTCCATACAATGCTTCAGCGATATTAATAGATGTAAAATATACAAACCTATACATTTATTTTGCTaataagagaaaaataaataaatatctgaCTCAA

Function

symbol description
smarcal1 Predicted to enable ATP-dependent DNA/DNA annealing activity. Acts upstream of or within several processes, including angiogenesis; animal organ development; and embryonic body morphogenesis. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Is expressed in central nervous system; immature eye; and intermediate cell mass of mesoderm. Human ortholog(s) of this gene implicated in Schimke immuno-osseous dysplasia. Orthologous to human SMARCAL1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1).

NR:

description
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K14440 SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818520.1 True 3724 mRNA 0.47 17 15264124 15276183

Neighbor

gene id symbol gene type direction distance location
xrcc5 xrcc5 coding upstream 40884 15216368 ~ 15223240 (+)
tmem169b tmem169,LOC103361546,LOC102780762 coding upstream 48393 15210721 ~ 15215731 (+)
pfkla pfkl coding upstream 56423 15197169 ~ 15207701 (+)
si:ch211-45c16.2 map3k13 coding upstream 67905 15160313 ~ 15196219 (+)
LOC120569630 fam126b,LOC104961134 coding upstream 128431 15086370 ~ 15135693 (+)
tmem41aa tmem41a,LOC103374480 coding downstream 68868 15345051 ~ 15348808 (+)
ankzf1 ankzf1 coding downstream 144619 15420802 ~ 15426678 (+)
myo10l3 LOC103370188 coding downstream 167271 15443454 ~ 15500197 (+)
pttg1ipb LOC104944099,LOC103370189 coding downstream 225934 15502117 ~ 15505588 (+)
fmnl2a fmnl2,LOC102797926 coding downstream 239278 15515461 ~ 15565842 (+)
LOC120569306 NA non-coding upstream 14295 15243198 ~ 15249829 (+)
G123989 NA non-coding upstream 32441 15226085 ~ 15231683 (+)
G123967 NA non-coding upstream 182978 15079454 ~ 15081146 (+)
G123931 NA non-coding upstream 248826 15013151 ~ 15015298 (+)
G123930 dip2a non-coding upstream 252688 15010978 ~ 15011436 (+)
LOC120569294 NA non-coding downstream 139225 15415408 ~ 15416204 (+)
G124150 NA non-coding downstream 260352 15536535 ~ 15567461 (+)
LOC120570206 NA non-coding downstream 439423 15715606 ~ 15739958 (+)
LOC120569337 NA non-coding downstream 611954 15888137 ~ 15891006 (+)
G124229 NA non-coding downstream 636032 15912215 ~ 15912428 (+)
trpm2 trpm2 other upstream 105187 15137587 ~ 15158937 (+)
si:dkeyp-118h9.7 LOC102200331 other upstream 270290 14976595 ~ 14993834 (+)
G123742 NA other upstream 1030054 14233332 ~ 14234070 (+)
cps1 cps1 other upstream 1567790 13635554 ~ 13696334 (+)
G123633 NA other upstream 1910039 13353306 ~ 13354085 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other downstream 230801 15506984 ~ 15573848 (+)
galnt13 galnt13,LOC102796746 other downstream 342331 15618514 ~ 15661014 (+)
LOC120570321 NA other downstream 694799 15970982 ~ 15977874 (+)
dap1b dapl1 other downstream 823088 16099271 ~ 16101642 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 1711888 16988071 ~ 17023560 (+)

Expression


Co-expression Network