spopla (spopl,LOC102233870)


Basic Information

Item Value
gene id spopla
gene name spopl,LOC102233870
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11184045 ~ 11196937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818547.1
TTTTCCTAGCTTGTAAGCTACCAGCCAGCTAGACAGATGTAAGCTAGCACAGATATAAATTAGACAAAGAAACCTTGTGAAGAGACTGAGTGAAAAAGAGTGTAAAGTAACGGAGGGTGAAAGGAGCGACTGTGACACAAAGCTATATGCGTTGTCCGATATATATGGAAGTATGAAATTGAAAGAGTGGAACATGAGAATGGGGCCATGAAGGATCCTGTGATAACTTAGAAAAAATTGCATCTTTGTACATTTCAACTATTCAAAAGtGCTTTCAGGACGAGAGTGAGTGGTACCCCGAAGCCAGTGATGTCACGGGttcccacccctcctcctcctgggGAGATGTCAAGTGGACCTGTGGCAGAGAGCTGGTGTTACACACAGGTTAAAGTTGTGAAGTTCTCGTACATGTGGACCATAAACAACTTTAGTTTTTGCAGAGAAGAAATGGGGGAGGTGTTGAAGAGCTCAACCTTCTCCTCTGGCCCTAATGACAAGATGAAATGGTGTCTGCGAGTCAATCCAAAGGGACTTGATGATGAAAGCAAAGATTATCTGTCATTGTATTTACTTCTTGTTAGTTGTCCAAAAAGTGAAGTTAGAGCAAAGTTCAAGTTTTCTTTGTTGAACGCTAAAAGAGAAGAGACAAAAGCGATGGAAAGCCAAAGAGCATATAGATTTGTCCAGGGCAAAGACTGGGGCTTCAAAAAATTTATAAGGAGAGATTTTCTCCTTGATGAAGCCAATGGACTCTTACCAGATGACAAGCTCACACTGTTCTGTGAGGTAAGCGTGGTCCAGGACTCGGTTAACATTTCGGGCCAGTCCAACATGAACATGCTGAAGGTACCGGAGTGTCAGCTGTCTGATGACCTGGGGAACCTGTGGGAGTGTTCACGCTTCACAGACTGCAGCCTCTATGTGGGAGGGCAGGAGTTCAAAGCCCACAAATCCATCCTTGCAGCAAGGTCACCAGTCTTTAATGCTATGTTTGAACATGAAATGGAGGAGAGTAAAAAGAACCGCGTTGACATCAGTGATGTAGACCCAGATGTCTTTAAGGAAATGATGGGCTTCATCTATACAGGAAAAGCCCCGAACCTGGAGAAGATGGCAGACAATTTGCTGGCAGCTGCAGATAAATACGCTCTGGAGCGTTTAAAGGTCATGTGTGAAGAGGCCTTGTGCAACAGCCTTTCAGTGGAGAATGTGGCCGACACCCTCATCCTAGCAGACTTGCACAGTGCCGAGCAGCTCAAAGCACAAGCCATAGATTTTATCAACAGGTGCAGTGTCCTGAGACAGCTGGGCTGTAAAGATGGAAAGAACTGGAATAGCAATCATGCTACAGACATAATGGAGACTGCAGGCTGGAAGTCAATGATCCAATCCCATCCTCACTTGGTAGCCGAGGCCTTTCGTGCCCTGGCTTCAGCACAGTGCCCACCCTTTGGTCTTCCCAGGAAGCGTCTAAAACAGTCCTGACTGCCCGACTGTGCCCCAGGACTTTACTGGAGGTGTGAAGCATGGGTTTACAAAGAAAGGACTAGCGAGGGTACCACTCTTTATTCCACCAAAACTGAACACACTTGAATAAAGAAGAGTGGAGCTTTCTGCCCAGGGATTTGGGAAGGCTGGCACGTGGACGACTGACATCAATGGATTGGGGAAAAAATTGGTAAAATtgatgttgcttgcttgctttgCTGCCCCAACTGAATTGTGTTCAGCCTGGGTAGCAAGTCAAGCTGTCTGctactttttttcccctgtaATTTTAAAAATGGCCTTAATATATCTGCCATTGCTCTGGAGCTGCTCCAGAGTACTTTGTCTATTTTACTCTGTGCCTGCCTTGTCACAAAGACCAGGCCTCCTCCAGGTTGCACTAGTTCCCATGAATAGTCATTTTGATATGGAGTTCTATAGGAACGTAACAAAGGTTTAACTAAATgggaaatattatatatttgtaatgTTTAGCCCGTTTTGTGACTAGACATTAAAAAGCATGaacactttcagtgcaaggtcAGTCCTTTACACTTTTTAAAAGATGTGTATGCCCCATATTGATGGCACCATTTCTATGTAAATGACAGTTGCACCATCTTCAGAAGACCAGTGTACAAGAAAGTCTGTTCTATTGCGTATTTGTGGGAAAAATTGTAATCTGCCATTATGAAGACCCAGTGTCTATCCTAATACACGTAAGACGGAAAAGTGTCTATTCTTTGGCCCtaatatattaaaacattgGAAGTATTTA

Function

symbol description
spopl Predicted to enable ubiquitin protein ligase binding activity. Involved in negative regulation of protein ubiquitination and proteasome-mediated ubiquitin-dependent protein catabolic process. Part of Cul3-RING ubiquitin ligase complex.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818547.1 True 2272 mRNA 0.44 12 11184045 11196937

Neighbor

gene id symbol gene type direction distance location
LOC120570501 NA coding downstream 37586 11140448 ~ 11146459 (-)
LOC120569949 NA coding downstream 47848 11133981 ~ 11136197 (-)
gtf2e1 gtf2e1 coding downstream 54132 11117587 ~ 11129913 (-)
poglut2 NA coding downstream 245144 10929938 ~ 10938901 (-)
tex30 tex30 coding downstream 255022 10926558 ~ 10929023 (-)
LOC120569285 LOC104963990 coding upstream 31670 11228607 ~ 11236759 (-)
LOC120570649 NA coding upstream 65421 11262358 ~ 11268852 (-)
LOC120570648 hnmt,LOC107099306 coding upstream 73259 11270196 ~ 11276706 (-)
LOC120569666 LOC101066695,LOC103353973,LOC100702988,LOC104967496 coding upstream 384093 11581030 ~ 11587073 (-)
chpfa chpf coding upstream 650552 11847489 ~ 11853239 (-)
G123232 NA non-coding downstream 46974 11136609 ~ 11137071 (-)
G123160 NA non-coding downstream 308965 10822765 ~ 10875080 (-)
G123142 NA non-coding downstream 401537 10709001 ~ 10782508 (-)
G123145 NA non-coding downstream 420129 10757843 ~ 10763916 (-)
G123131 NA non-coding downstream 511367 10672309 ~ 10672678 (-)
G123286 NA non-coding upstream 337187 11534124 ~ 11534342 (-)
LOC120569662 NA non-coding upstream 343890 11540827 ~ 11544518 (-)
G123290 NA non-coding upstream 351566 11548503 ~ 11548704 (-)
LOC120569667 NA non-coding upstream 396244 11593181 ~ 11596706 (-)
G123310 NA non-coding upstream 401009 11597946 ~ 11599502 (-)
stxbp5l stxbp5l other downstream 89426 10940053 ~ 11094619 (-)
G122878 NA other downstream 2183922 8999462 ~ 9000123 (-)
ccnt2a ccnt2,ccnt2a,LOC104923135,LOC102200362 other downstream 2380941 8793621 ~ 8803104 (-)
traf3ip1 traf3ip1 other downstream 2735615 8399585 ~ 8448430 (-)
tmeff2a tmeff2 other downstream 3866413 7181931 ~ 7317632 (-)
thsd7ba NA other upstream 83673 11280610 ~ 11467939 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other upstream 1035483 12232420 ~ 12245005 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other upstream 1422416 12619353 ~ 12619815 (-)
ikzf2 ikzf2 other upstream 2978877 14175814 ~ 14201729 (-)
G123886 NA other upstream 3587624 14784561 ~ 14794497 (-)

Expression


Co-expression Network