LOC120570308 (LOC104919611,LOC104963617)


Basic Information

Item Value
gene id LOC120570308
gene name LOC104919611,LOC104963617
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 10119132 ~ 10122616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818584.1
GCTTAAGTGGAGTGGgtcagaaagaaaacatttcctCAGCAGTTTCTTTAGAAGTTTCTCTTAACTTTTAGATATTACAGAGTGTTCAGATATTAGAGACACTTCACTTCAAAGTTCATCGTGGGACAGAATGACTACCACCATGGAGAAATCTACAAACTTTCGCATTGATGCGCTACTGGCGCACGACGTGGAACAGAGGAGGGACAGCGATGGTGCGTCCCCGGGGTTGTATTACAGCAGAAGCCCCGGCGGCAGCCCGGTGTCAAACCGCGGCTCAGAGACGCCTTCCCCGCATCCAAACCCAAAAGACTGCTCTCCTGTCCCGCCAGGAGTCCTATCCAAAGCGCAGCTCTTCAGCTTGTCCCAGTCAGGATTCACTGCTCTGCACCAAGGGGGTCTCCTCGGAATGCACCCGGGCTCCATGTATCCTCTGGCGGCCCTCGGAGGCCAGCACCCCGCCTTCATGTACCCAGGTTTCACACAGCTGGTCCAACCATATCCTGAGCAGCTGAAGGGGGCCACCATGGCCGCGACGCTTACTCTGGAGCCGTGGATCAGAGCCGGGATGATGATACCCAGactcggagaatatggagCCCCGGCCCAAGTAGGTTTGTTTGGAAAGTGTCGGAGGCCCAGGACAGCTTTCACCAGCCAGCAGCTGCTGGAATTAGAAAACCAGTTCAAGCTCAACAAGTACCTGTCCAGGCCTAAACGCTTTGAGGTGTCCACTTCCCTCATGCTGACTGAGACTCAGGTTAAGATCTGGTTCCAGAACAGACGTATGAAGTGGAAGAGAAGTCGCAAAGCTAAGGAACAAGCAAcgccactgacacacacagaaagacctGGAATGGATTTAGACAGTGCCAAGCCTCAGAGCGATTCACACAGCTCGAGcctggaggatgaagaggagataGAAAGGGATGATGAGgatgaaaaagaggagagaaaagtgcTGAGGGCGGGTTCCTTAGGATCTGTAGGCTTCATGAGGCATGCTGGAGAAGGAACAGGAAACTACAGTTCATACTtagaagaggaggagcaggaggagggaggCCCAAGAACAAGAAGTGGGGTTTTCCCATAGTTCTAAAGTTCAGCATGCCTTAATTGTAtgtctttttatatttattaccCTTGAGCAGACAATACACATTGCAATCAGGTGCACAAACATGGTGGAATGAAGTGGAGATCTAATTTTTCACACCCCAACCCATAGTCTGTACCTGGAGCTCCCGAATTACCAAAAGGGTAAGTTGACATCTGCACATTGGGCTGGGTATGAAAACTGATGACATCCAACCAGAATAATGCCATCTTTACCTGGACATTTAATGGTTTAATGGTCAGTAGTCCATCTGAGTTATGACTTCAGAATCAACAAATAATTCTGAGGTATAATGGGCATTTTTGTGCATGATTTACTTGTGATTTAAAcagtgcaaacacacagaaagcatGTTCCTGTCCTTTCATCTGCAATAAACTGATTTATctataaatataaaactgtatgcatgtatgcatgggTGGGGTGGGACAGCACTTTCATGGAAGGTAGTGGATGcagaaaaagaaacattaaCTTGGAGACTCGTGTTGTGAAGAGTGTCAGTGTTACATTGTTACAAATGCTGGACAAATATTCCACCAATATTTGTAACttttcatattttaaatttttaatgaGGCAAGACTTTACAAATAATGGATTCATTTTCACCCAGTTAATGATTTAGGGCATTAGGGGtggcaaagaaaaaaatctattgtAGGCTTTTTTACTGTGTGGTCATGGATCTTTGTTGTATAATATTTAACTCTTTGTTTTGTATTATCTTGTTGAAACTGCATGTTATATTTAGTTAAAACCACACATCCACAAAGACATGGCTGCATGTAATGTATGgtatttaaaatgtactgtTGATATGGCATTTTCCCTGTATTTTGTAAACTATTCTCATATTAAGTGTGTTATGTTGTCATTGTCAATATACAGTAATTTAACATTATagaatttaatatattttacttGTAAAGCAATAATAGTGTTTTTT

Function

NR:

description
Motor neuron and pancreas homeobox protein 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818584.1 True 2075 mRNA 0.44 3 10119132 10122616

Neighbor

gene id symbol gene type direction distance location
cfap65 NA coding downstream 371 10104650 ~ 10118761 (-)
wnt6b wnt6 coding downstream 34912 10058333 ~ 10084220 (-)
wnt10a wnt10a coding downstream 75743 10016813 ~ 10043389 (-)
cdk5r2b cdk5r2 coding downstream 147899 9968224 ~ 9971233 (-)
LOC120569366 LOC104944296 coding downstream 277562 9837041 ~ 9841570 (-)
myo1b myo1b coding upstream 20667 10143283 ~ 10208162 (-)
LOC120570057 NA coding upstream 636566 10759182 ~ 10761321 (-)
LOC120570237 NA coding upstream 751483 10874099 ~ 10878969 (-)
ralba ralb,LOC103370956 coding upstream 779229 10901845 ~ 10915402 (-)
nepro NA coding upstream 798387 10921003 ~ 10925563 (-)
G123036 cryba2,LOC106581834,LOC106586156 non-coding downstream 172548 9943488 ~ 9946584 (-)
G123029 LOC103365935,LOC103392484 non-coding downstream 208135 9910460 ~ 9910997 (-)
G122990 NA non-coding downstream 286942 9829431 ~ 9832190 (-)
G122986 NA non-coding downstream 294946 9823917 ~ 9824186 (-)
G122985 NA non-coding downstream 295538 9823184 ~ 9823594 (-)
G123096 LOC103358003,LOC101475894,LOC100710305,LOC104963614,LOC102781664,LOC101175694 non-coding upstream 91439 10214055 ~ 10217650 (-)
G123107 NA non-coding upstream 358899 10481515 ~ 10488786 (-)
G123127 NA non-coding upstream 543641 10666257 ~ 10666555 (-)
G123128 NA non-coding upstream 544614 10667230 ~ 10668174 (-)
G123130 NA non-coding upstream 545731 10668347 ~ 10668634 (-)
G122878 NA other downstream 1119009 8999462 ~ 9000123 (-)
ccnt2a ccnt2,ccnt2a,LOC104923135,LOC102200362 other downstream 1316028 8793621 ~ 8803104 (-)
traf3ip1 traf3ip1 other downstream 1670702 8399585 ~ 8448430 (-)
tmeff2a tmeff2 other downstream 2801500 7181931 ~ 7317632 (-)
pcbp3 pcbp3,LOC100710924,LOC107660579,LOC103138153 other downstream 3247920 6782446 ~ 6871212 (-)
stxbp5l stxbp5l other upstream 817437 10940053 ~ 11094619 (-)
thsd7ba NA other upstream 1157994 11280610 ~ 11467939 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other upstream 2109804 12232420 ~ 12245005 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other upstream 2496737 12619353 ~ 12619815 (-)
ikzf2 ikzf2 other upstream 4053198 14175814 ~ 14201729 (-)

Expression


Co-expression Network