LOC120570316 (acvr1c)


Basic Information

Item Value
gene id LOC120570316
gene name acvr1c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15920603 ~ 15941311 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818603.1
AACAGAGGCGGAGCAAACCTCTCCCTGCGTTGTAAAGTTTCCTCCCCGCATTTGCTGTGCGAGGCATTTGTGCGGGGTGCATGGCCGACTGACTTTACCGCAATggataatgtgtttttctgtaGAGTAGCTGTGTGAACGGTGcgacggagacggagcagatGCGGCTCTTGCCATGATTCGTCCCGGGAAGCAGAGCTTTCAAGCGGCGTTGATCTTTCTGTCTGTCGCCCAGCTGACTGCAGGTCTGAGGTGTGTTTGCCAGCTTTGTGCCAACCACACATGTGAGACGACCGCAGACGGTGCCTGCTGGAACTCTGTGATGCTGATTGACGGGAAGGAGGAGACGGACAAGTCCTGCCTGTCGCCCTCTAAGTTGAAGGGCCAGGTCTTTTGCTACAGCTCCCGAAATGTCTCCAAGAGGAACTGCTGCTTCACTGACTTCTGCAACAATGAGACTCTGCACTTACACCCAGaAAGGCCTTTGGAAGAGCCTGGCTGGAGCAGGCTGCAGCTCACTGTGTTGATCCTGGTTCCCTCCTGCCTGTTGTGTGTGGGGATCCTGCTCGGTGTGTTCGTTGTGCAGGGCCGCCGCTGTGCCTACAGCAGAGCCCGCAAGCAGGACCAAGAGGAGCCTCTGGATGACCAGATGCTAATGTCCACTGACAAAAGTCTTAAAGACCTCATCTATGACATGAGCACCTCAGGCTCTGGATCAGGTCTGCCACTGCTGGTCCAGCGAACTATAGCTCGGACCATTGTCCTGCAGGAGACCATTGGGAAAGGTCGGTTTGGTGAAGTGTGGCGGGGAAGGTGGCGAGGAGAAGATGTGGCGGTGAAGATCTTCTCCTCCAGGGACGAGAGATCATGGTTTCGTGAAGCAGAGATTTATCAGACAATCATGCTCAGACATGAGAACATCTTGGGCTTCATTGCTGCTGACAACAAAGATAATGGCTCATGGACCCAGCTCTGGTTGGTGTCAGAGTACCATGAGCATGGCTCTCTGTATGACTACCTGAACAGGTACACAGTCTCCTTGGAAGGCATGATCGTCCTCGCTCTGTCCATAGCCAGTGGGCTGGCGCATCTCCACATGGAAATCATTGGAACACAGGGGAAACCTGCCATTGCTCACAGGGATCTAAAGTCTAAAAATGTCCTGGTGAAGAAGAACGGCACGGCAGTCATTGCGGATTTGGGCTTGGCTGTGAAACATGACTCAAGCACCAACTCCATTGACATGCCGTCCAACCACAGAGTGGGAACCAAGCGGTACATGGCCCCAGAAATCCTCGATGAGACAATCAATATAACTAGCTTTGAGTCATTCAAGAGGGCGGATATCTACTCGCTAGGTCTGGTGTTCTGGGAACTAGCCCGAAGATGCTCTGTTAGAGGACTTCATGAAGATTTCCAGCTGCCTTATTACGACCTGGTGCCTTCTGATCCGACCATCGAGGACATGAGGAAGGTGGTGTGTGAGCAGAAACTCAGACCCAACGTTCCCAACCAGTGGCAGAGCTGTGAGGCTCTGCGTGTGATGGGCAAACTGATGAGAGAGTGCTGGCATGCCAACCCTGCTGCTCGACTCACTGCTCTGCGGGTCAAGAAAACGGTGTCTCAGCTGTCTGCCATCAAGGATGTCAAAGATTAGTTAGATTTGTTGCCCTGCAGATCAGCACTGGTGCTGGCACTGGTACAACATGATGGACTGAGAGTTGTTGAAAGCAACAACTGTGAGAAACTGTTCTCTCTAACGGCCTGAGGCTGCCCTCTTCAGGACACAACAACACTGTTCACCCTCAGAGAGCAACTTCAGGTTGTTTTTGGTGCCAAAGTATTGTAGGGGGTGTCTGTGGCTGCTTTGCACATAGACACCTAGGTAAAAACAAAATTGAACCAAACTGCTGAACTTTTGGTCGGAAGAGCCATATGAAATAAGAATATGTCTTATATATATAGAGATTATTTTGCTACCTCAAACATTTAAGTGCCCAAAGCTTGAAGTTGCACATTGTGATGTTTTTGTGCCATATCTTGTATCAAATACAGTATTGCTGAGTAGTTAGTGTGCTAACTGACAATCACAAATGATACTGGATAAGACACCCTGACTGGTTCTGACTGGTTTTAAATGCAACACTTACATACTGTCCCTGATAATCTGAATTTTAAAGTGTTAAAAGTGTACACTTAACAGGAATACAACTGTGCATTTCCAAGTGGAAAACATCCTTTAGCTAAATTTAGTTTGTTTTCAGTGTGATTTAGTTCTGACTAGTGATTTTAACCACCATAGCTCCATGAATGGCAATGAAGTTTGTCCATTCGATCTGTTGGTCCAAATACCTCGACATGTATTGAATGGATCACAATGACATTcctggtccccagaggatgaaccccCGATCCCCTGACTTTAAGTATATCTAAAGGCTGATTCTCAGTTTAGTTGAGCTGAAACTAATAAGAATTACCGTAAAATCATTAGAGGTTTGgatttaaagacaaaactttaaGTATTTGGACAGACGTAGTGGTaagaattaaatttaaataataaagcaGTCTCCATATTTGAACAGCCTCATGGGATTAGTAGAGTGGCTATAGACGTTTTCTTTGTCTTGTCCTTTACAGAAAGAGAAGTACAACTATAAGCTCCTGCTATACATTTTGCACATTTAAAGCTTTCAGTTGCTGAAAAAGCTGCTTTCTTGACAGGTGAATGCTAGTTTGCTGACAAACAAAAGCTCAATTATGAATgtgaaaagtcattttttttttatatttctcaaatgtatttatttagacTGGAAGCATGTTATTCAAATTATTAAATCTTAGCAACCCTAATGCATGGGTCAAAACATCAGTATTGTTAACATTGGCTCATTGGTATTTCTTTTGACAGGGAAATCTAACAACTAAGCCCAGTACAtgttagaaaacactcaatctTTCAAGCCcaatgctgttttacagcagGTGTCCCAATGTACAAGGTAATTATGATGAAATCAAAGACCAAGATAAGATCAGAGCTTGATAAAGCTAATGATAAACTCATAAAACAAGAGGATAACAACAAATTGTTTCAGTTTAAGACATTTCACTTGGAGACCACAGTCTGGGTGATGGGTGCTCTTATGATCACCAATGCCACTGGCTGTTGAGGCCTGTAAAGCCTTGTCAAAACAGGCTTAGGGGAAGTGCACATCAGTGAATCTGTACACCATGTATGCTTGTATGCATCCACATGTGTGAAagtgtgcctgcgtgtgtgtgtgtgcgtgcgtgtgtgtgcgtgtgtgtgtgtgtgtttcatatcatgTGAAGTGATCCTGGGATTAATGATGTGAATCTGATCATTGTAGTGTTTTTGAAACATGGTGCTGTCAAGAAAACCTTTCCATGTTTCCCATCCATCATGGCTTTTTAATACATCCTCCGTTAATGTTCATGTTTTTAGTTGCTAAGGTTTACATACTTCCATGTAGCTGCTTAGTGTTGACACACATACGTGTCCTGCTGTTATGAAGGTGTCATTGTTATTACTGGTTGATATGTAGCATCAGCTGTGTTGGCTCTTAAAAATAAGCTATGTACAGTAGCCTGGCGCTCTCTTGACAAATATCAGTTAATGAAcaagttttcattttttctttctatgAAATGATTAGTTGACTTCAATCATAGGATCATTTGACTTTGTATGGTGcagaatatatataaaagaaatattgAAAATGCAGTATTAAAGCGTCCGTCCATTgaaaatggaaatgaaaatggaTTATCTGATGTTGGATCTTTGCTGAGCCAAGCTTATATTTTGTCTATTGTGTCATAGCTGCTTCTCCAAGAATCAGACAGGTGACACAACTCATAGCTAAGCATATGAAAAACTTATCAATCCTTCCAAAGAGGAGTGACCACCATGTGCAATTTCTGACTGGTGTCTTtttaatatattgtatataaaaTTGCTAAATATGAAcaaacattatatattatattataataataccGCTTTCATGAAAATAAGACCTACTTTTTGATTTCCAAACCATCCAGTCATTTAGATCAATACTTTTGATTTATGTGAAACTGTTTTGTGTCATTGCTCAGATTTCATGCCATTGAATTGTATCTTTTCTCTTGCACTATTTATTCTGTATAGAAAGTAGTGATATTAGTGGGTCAATAAACTGTTTTtcatgaagttaa

Function

symbol description
acvr1c Is expressed in heart.

NR:

description
PREDICTED: activin receptor type-1C

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K13568 ACVR1C, ALK7; activin receptor type-1C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818603.1 True 4233 mRNA 0.43 9 15920603 15941311

Neighbor

gene id symbol gene type direction distance location
LOC120569256 cytip coding downstream 1315 15915899 ~ 15919288 (-)
LOC120570325 NA coding downstream 8977 15909946 ~ 15911626 (-)
nr4a2a nr4a2,LOC106586168,LOC104920078,LOC103363922 coding downstream 102938 15812684 ~ 15817665 (-)
rprma rprm,LOC102780493 coding downstream 304746 15614674 ~ 15615857 (-)
prpf40a NA coding downstream 334652 15567999 ~ 15585951 (-)
LOC120570317 acvr1 coding upstream 3552 15944863 ~ 15969969 (-)
LOC120570319 ccdc148,LOC102793443 coding upstream 40063 15981374 ~ 16014154 (-)
LOC120570585 NA coding upstream 282024 16223335 ~ 16275563 (-)
cd302 cd302 coding upstream 339627 16280938 ~ 16285265 (-)
LOC120569635 rbms1,LOC104955249 coding upstream 346928 16288239 ~ 16305884 (-)
LOC120569338 NA non-coding downstream 18914 15864532 ~ 15901689 (-)
G124146 NA non-coding downstream 415891 15502748 ~ 15504712 (-)
G124136 NA non-coding downstream 444455 15475258 ~ 15476148 (-)
trnak-uuu_17 NA non-coding downstream 503331 15417200 ~ 15417272 (-)
G124014 NA non-coding downstream 724385 15178318 ~ 15196218 (-)
G124304 NA non-coding upstream 160845 16102156 ~ 16102355 (-)
G124324 NA non-coding upstream 339273 16280584 ~ 16280878 (-)
G124346 NA non-coding upstream 381174 16322485 ~ 16322657 (-)
G124350 NA non-coding upstream 403977 16345288 ~ 16357884 (-)
G124366 NA non-coding upstream 460447 16401758 ~ 16402030 (-)
G123960 NA other downstream 926814 14984485 ~ 14993789 (-)
G123886 NA other downstream 1126106 14784561 ~ 14794497 (-)
ikzf2 ikzf2 other downstream 1718874 14175814 ~ 14201729 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other downstream 3300788 12619353 ~ 12619815 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other downstream 3675598 12232420 ~ 12245005 (-)
G124303 dapl1 other upstream 157967 16099278 ~ 16101593 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other upstream 266379 16207690 ~ 16222736 (-)
gcgb gcg other upstream 437177 16378488 ~ 16380765 (-)
LOC120570068 LOC103362129,LOC101485094 other upstream 439939 16381250 ~ 16389894 (-)
fastkd1 fastkd1,LOC102780871 other upstream 1094062 17035373 ~ 17042372 (-)

Expression


Co-expression Network