nostrin (nostrin)


Basic Information

Item Value
gene id nostrin
gene name nostrin
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16877709 ~ 16886192 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818666.1
AGCCACAGTCTTAAGATGAAGGACCCTATCagcacctgctctTATAACCAACTCTATCAAAATGTTAAACGATTTTCAAAAACTGGAGAGTACTTCTGCAAAGAACTTATGGCAGTTTTTCAGCAAAGgGCTGAGCTGGAACTAACTTATTCCAAAGGACTACAAAAACTTGCTGGCAAACTCATCAGGGCCTCAAAGGGAATGTCAAACAATTCCACCTACAGTGCCTGGTGTCATGTGTCAGATGAGATGTACTCGAGAGCAGATGCCCACAGATCATTAGGAAATGCATTTCAGCAAGAAGCAATTCTGGAAATACGACAAGTTTTAGACGAGCATAATAAGAGGAAGAGGCCTCTTGACAGTGCCATCGAAAGAACTGGAAAACTTTTTACTGCTAATTGGAGTGAGCAACTCAAGATAAAGAAGAAATTGCATGGACTAACAAGAGAGCATGAGGCTTTGTTCAACTTTGTTGACAACAACAGACAGATTtgcacagaaaaagaaaaacaaaagATGCTGAACAGGCTGACAAAGTCTGCAGAGATGCAGGCGCGGGTGGATGAGGAGTACTTTAATGTCAACATGGAGGGTCATCAGATGAGACTCAAGTGGGAAAATACACTGAAAAACTGCTACCAGATCATACAGGAGCTGGAGAAACAGCGAATTGAAGTTCTGTGCAACATTTTGAGTAGATACAACCTTCACATGTCCAGCTTTGGGCAGACCCTCAAACATGGCCAAAGGCAAATAGAACAGACAGTCCAAAGGGTGGATATGGATAAAGACATACAAACCCTGGTGGAGGAAAACAGCATCACAGCTGAAGATCACAAAGCAGAGTTTTTGATGGCCGATTATTTTGAGGAGGACAGAACATCACTGATGGCCAAAGACCGAAGAAAAGAGGCCATCAATCTCAAACTCCAGCGTCTGGAGGACAGTATTACAAAAACCAAGAAAGACCGTGAAGGAATTGAAAAACTAATGAGAACATATTCTGAAAATCCATCTTTTTCAAACCAAAAGAACCTTGAGGAAACTGAACAGCAGAGTGATGAGAGTTCTCTCAAACTGGATCTCCTTGAGGCCACTCGCTACAAACTCTCTTTATCACTGTCTGAGATAGAGGGGAAAACCAAGTCCTTTTACCGATTCAGTGACAGCATTGTGAAATGGAAAGACAAGGACTGTGAGCACAGCGTTGTTCAACTGACTCGCCCAGTCAAACTCAGGAGGACCCCATTCAGATCCCGACAATCACTTAGAGCTTCCATCATTTACAAAGGACCTGCTGAGTTTGTGACACAGCAGTCTGTGGAGACTTTACCAAGCGCCACCGACCAAGTCACTTCCACAGCTGCAACACAAGCAACTGCAGCTGCAGAGTGTGGCAGCACCCTTAATGGAGCTCTGCCTCACACTGATGATGACAAAGGACAAGGTCAAATAACACAGGAGATGTGCAGTATGGGAAAATGTAAGGTCCTGTACAATTTCACACCTCAACAGGATGATGAATTGACTTTGAAAGAAGGAGATCTTCTAGACATTTATGGAAAGGAAGAGAATGGTTGGTGGATTGGCAAACTTGATGGGAAAACCGGCCATTTTCCATCAACCTATGTTGAGGAGCTGCCTGTGTTAAGCGGCGTCAAATCATCTGATGCCTGACTGACTTGACTCATcagcaacaaaaatacaaaactcACCCTGAATCAGAGATTCACTGCTGCAGTGGCAAAAGTTAAAAAGGCAACACCTGGAAgccttatctatctatctatctatctatctatctatctatcttatctatttatttattgcaggaacatctgtctgtctgtgtgtgtgtgtgtgtgt
>XM_039818667.1
CAGGTGATTTCCGCATGAGTGACTTTAGGAGGAGGGTGGTCAAAGTTCCAAGGTCCAAAGTCAACAAACAGCCACAGTCTTAAGATGAAGGACCCTATCagcacctgctctTATAACCAACTCTATCAAAATGTTAAACGATTTTCAAAAACTGGAGAGTACTTCTGCAAAGAACTTATGGCAGTTTTTCAGCAAAGgGCTGAGCTGGAACTAACTTATTCCAAAGGACTACAAAAACTTGCTGGCAAACTCATCAGGGCCTCAAAGGGAATGTCAAACAATTCCACCTACAGTGCCTGGTGTCATGTGTCAGATGAGATGTACTCGAGAGCAGATGCCCACAGATCATTAGGAAATGCATTTCAGCAAGAAGCAATTCTGGAAATACGACAAGTTTTAGACGAGCATAATAAGAGGAAGAGGCCTCTTGACAGTGCCATCGAAAGAACTGGAAAACTTTTTACTGCTAATTGGAGTGAGCAACTCAAGATAAAGAAGAAATTGCATGGACTAACAAGAGAGCATGAGGCTTTGTTCAACTTTGTTGACAACAACAGACAGATTtgcacagaaaaagaaaaacaaaagATGCTGAACAGGCTGACAAAGTCTGCAGAGATGCAGGCGCGGGTGGATGAGGAGTACTTTAATGTCAACATGGAGGGTCATCAGATGAGACTCAAGTGGGAAAATACACTGAAAAACTGCTACCAGATCATACAGGAGCTGGAGAAACAGCGAATTGAAGTTCTGTGCAACATTTTGAGTAGATACAACCTTCACATGTCCAGCTTTGGGCAGACCCTCAAACATGGCCAAAGGCAAATAGAACAGACAGTCCAAAGGGTGGATATGGATAAAGACATACAAACCCTGGTGGAGGAAAACAGCATCACAGCTGAAGATCACAAAGCAGAGTTTTTGATGGCCGATTATTTTGAGGAGGACAGAACATCACTGATGGCCAAAGACCGAAGAAAAGAGGCCATCAATCTCAAACTCCAGCGTCTGGAGGACAGTATTACAAAAACCAAGAAAGACCGTGAAGGAATTGAAAAACTAATGAGAACATATTCTGAAAATCCATCTTTTTCAAACCAAAAGAACCTTGAGGAAACTGAACAGCAGAGTGATGAGAGTTCTCTCAAACTGGATCTCCTTGAGGCCACTCGCTACAAACTCTCTTTATCACTGTCTGAGATAGAGGGGAAAACCAAGTCCTTTTACCGATTCAGTGACAGCATTGTGAAATGGAAAGACAAGAAGGTTTGGTCAAGTTTGCattccaacaacaacaaaccctTAGAGTGGCAGAAGTTGGATGTTGTATACACTATTAGTCAAGGCAggtcaattttatttttatggccCAAAAGCACAAATGTCAAAGAGCTTTACAATCTATATGCAGAAGTACTTCTGGTTAGGAATTACAGTTCTAGGATATTATGTAACACAAACTACTTTCCTTTCTGAGGACTGTGAGCACAGCGTTGTTCAACTGACTCGCCCAGTCAAACTCAGGAGGACCCCATTCAGATCCCGACAATCACTTAGAGCTTCCATCATTTACAAAGGACCTGCTGAGTTTGTGACACAGCAGTCTGTGGAGACTTTAC

Function

symbol description
nostrin Acts upstream of or within several processes, including glomerular epithelium development; regulation of filopodium assembly; and sprouting angiogenesis. Orthologous to human NOSTRIN (nitric oxide synthase trafficking).

NR:

description
nostrin

GO:

id name namespace
GO:0050999 regulation of nitric-oxide synthase activity biological_process
GO:0007165 signal transduction biological_process

KEGG:

id description
K20126 NOSTRIN; nostrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818666.1 True 1869 mRNA 0.43 16 16877778 16886192
XM_039818667.1 False 1619 mRNA 0.42 14 16877709 16885481

Neighbor

gene id symbol gene type direction distance location
cers6 cers6,LOC102785199 coding upstream 1245 16860410 ~ 16876464 (+)
b3galt1b b3galt1 coding upstream 44715 16776449 ~ 16832994 (+)
xirp2b xirp2,LOC102308033,LOC104949804 coding upstream 102404 16757646 ~ 16775305 (+)
galnt3 galnt3,LOC102786846 coding upstream 165031 16704149 ~ 16712678 (+)
ttc21b ttc21b coding upstream 174414 16690517 ~ 16703295 (+)
LOC120570364 g6pc2 coding downstream 6006 16892198 ~ 16894101 (+)
LOC120570362 NA coding downstream 23881 16910073 ~ 16919833 (+)
LOC120570363 NA coding downstream 33804 16919996 ~ 16929385 (+)
rdh1 LOC102203631,LOC106926445,LOC103461719,LOC103134343,LOC100699208 coding downstream 43930 16930122 ~ 16938095 (+)
bbs5 bbs5 coding downstream 140173 17026365 ~ 17030715 (+)
G124430 NA non-coding upstream 173780 16703371 ~ 16703929 (+)
G124407 cobll1 non-coding upstream 245368 16598643 ~ 16632341 (+)
G124408 NA non-coding upstream 247595 16596708 ~ 16630114 (+)
LOC120570498 NA non-coding upstream 409073 16468040 ~ 16468636 (+)
G124371 kcnh7 non-coding upstream 461257 16414609 ~ 16416452 (+)
G124524 lrp2 non-coding downstream 70533 16956725 ~ 16957914 (+)
LOC120570570 NA non-coding downstream 120393 17006585 ~ 17008508 (+)
LOC120570569 NA non-coding downstream 123953 17010145 ~ 17011912 (+)
G124627 tlk1,LOC102777640 non-coding downstream 370650 17256842 ~ 17257502 (+)
G124631 NA non-coding downstream 375545 17261737 ~ 17262826 (+)
dap1b dapl1 other upstream 776067 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 899835 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1216695 15618514 ~ 15661014 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other upstream 1303861 15506984 ~ 15573848 (+)
trpm2 trpm2 other upstream 1718772 15137587 ~ 15158937 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 101879 16988071 ~ 17023560 (+)
myo3b myo3b other downstream 241689 17127881 ~ 17198590 (+)
hoxd10a hoxd10,LOC102792757 other downstream 973968 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 1124565 18010757 ~ 18017413 (+)
G125079 NA other downstream 1816836 18703028 ~ 18704528 (+)

Expression


Co-expression Network