LOC120570362


Basic Information

Item Value
gene id LOC120570362
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16910073 ~ 16919833 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818670.1
tatactgtctatgaggATACCTGAGTTCCCCGGAAGTTACCTTCAAATAAATGAAGTAGTAAAAGAAATCTTCACTATCTGTGTCTCTCCTGAAGATTCACGTCCTGTTGTCCTGCCATGCGACACTTAATGTATTCACTCTCCGCACAAAAAATGTACCTGTATATCCTTGGACTGGTGGCTCCCTGGTTCGCCTATCGCTGGTACAAGAACAGCAGAAGAGTGCCCAACAAGGAAGATAAATATGTCTACATTACTGGCTGTGACAGTGGGTTTGGCAATCTCCTCGCGAGACATCTGGACAAGCTGGGCTTCAATGTAATTGCATGCTGTTACACTGAGAAGGGTGAGGATGAGCTGAAGGAGAACGCCTCCGACAGACTGACAACCTTTCACCTGGATGTCACTGACTCCAAGAGTGTCAGCGAAACGGCAGCTCTCATCAAGACTGTGGTTGGACAGAAGGGCCTGTGGGCCGTGGTGAACAATGCTGGAGTCGCTCTGCCTTCTGGTCCCACTGACTGGCTCACTATAGACGACTACAAGGACATGATAGCTGTCAATCTGTGCGGTGTAATCGACGTAACACTGAGCGTCCTCCCTCTCATCAAGAAGGCCAGAGGCAGAGTGGTGAACGTCGCCAGTGTGTTTGGGCGAGTCACCCCGTTCGGCGGACCGTACTGCGTGTCCAAGTACGGAGTGGAGTCCTTCAACGACAGTCTGCGTTTAAACATGGCACCATTTGGTATCAAGGTTGCGTGCATTGAGCCAGGCTTCTTCAAAACTAATGTGACTGACGTAGTGGGAATGCAAAATAACCTGAGGAAGCTCTGGGACAGATTACCTCAGGACGTGAAGGACGACTATGGAcctgcttttttaaatgactCTATTGAAATGTTGACTCAACGGTTCAGGATGTTGACGGACAGCAACCTGATGAAGGTGGTCAGCTGCATGGAGCACGCCATCTCTGCCGTTCATCCTCGTACACGCTACTCTGCCGGATGGGACGCTAAGTTCTTCTGGTTGCCTGTGTCGTACATGCCAACCTGCATCTCCGATAGGCTTTTGCGTAAACATAGCCCTACTATAAAACCAAACCTGCTAATTTGAAGTTcatgtatatctttttttttttttttttttttttctttttactgcaATAACTGTTTGTACATGAAGGATTATTCCATTGACGACAGCATTTTCTGTATCATAAAACGTGTTTGGCTCTTT
>XM_039818671.1
CTGTAAGAACAATTGGAATGTCTTGTATGGAAAACTTGCTTGACCGACTATGAAAATGAGTTGAACGATTTTGCATTTAAAGACCTATTCACTGAATTTATGCCTGTGATGTTGGGGAGAAAAAATGTACCTGTATATCCTTGGACTGGTGGCTCCCTGGTTCGCCTATCGCTGGTACAAGAACAGCAGAAGAGTGCCCAACAAGGAAGATAAATATGTCTACATTACTGGCTGTGACAGTGGGTTTGGCAATCTCCTCGCGAGACATCTGGACAAGCTGGGCTTCAATGTAATTGCATGCTGTTACACTGAGAAGGGTGAGGATGAGCTGAAGGAGAACGCCTCCGACAGACTGACAACCTTTCACCTGGATGTCACTGACTCCAAGAGTGTCAGCGAAACGGCAGCTCTCATCAAGACTGTGGTTGGACAGAAGGGCCTGTGGGCCGTGGTGAACAATGCTGGAGTCGCTCTGCCTTCTGGTCCCACTGACTGGCTCACTATAGACGACTACAAGGACATGATAGCTGTCAATCTGTGCGGTGTAATCGACGTAACACTGAGCGTCCTCCCTCTCATCAAGAAGGCCAGAGGCAGAGTGGTGAACGTCGCCAGTGTGTTTGGGCGAGTCACCCCGTTCGGCGGACCGTACTGCGTGTCCAAGTACGGAGTGGAGTCCTTCAACGACAGTCTGCGTTTAAACATGGCACCATTTGGTATCAAGGTTGCGTGCATTGAGCCAGGCTTCTTCAAAACTAATGTGACTGACGTAGTGGGAATGCAAAATAACCTGAGGAAGCTCTGGGACAGATTACCTCAGGACGTGAAGGACGACTATGGAcctgcttttttaaatgactCTATTGAAATGTTGACTCAACGGTTCAGGATGTTGACGGACAGCAACCTGATGAAGGTGGTCAGCTGCATGGAGCACGCCATCTCTGCCGTTCATCCTCGTACACGCTACTCTGCCGGATGGGACGCTAAGTTCTTCTGGTTGCCTGTGTCGTACATGCCAACCTGCATCTCCGATAGGCTTTTGCGTAAACATAGCCCTACTATAAAACCAAACCTGCTAATTTGAAGTTcatgtatatctttttttttttttttttttttttctttttactgcaATAACTGTTTGTACATGAAGGATTATTCCATTGACGACAGCATTTTCTGTATCATAAAACGTGTTTGGCTCTTT

Function

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0001501 skeletal system development biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0042572 retinol metabolic process biological_process
GO:0042574 retinal metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0035138 pectoral fin morphogenesis biological_process
GO:0004745 retinol dehydrogenase activity molecular_function

KEGG:

id description
K13369 HSD17B6; 17beta-estradiol 17-dehydrogenase / all-trans-retinol dehydrogenase (NAD+) / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818670.1 True 1239 mRNA 0.47 5 16910073 16919833
XM_039818671.1 False 1210 mRNA 0.47 5 16910862 16919833

Neighbor

gene id symbol gene type direction distance location
LOC120570364 g6pc2 coding upstream 15972 16892198 ~ 16894101 (+)
nostrin nostrin coding upstream 23881 16877709 ~ 16886192 (+)
cers6 cers6,LOC102785199 coding upstream 33609 16860410 ~ 16876464 (+)
b3galt1b b3galt1 coding upstream 77079 16776449 ~ 16832994 (+)
xirp2b xirp2,LOC102308033,LOC104949804 coding upstream 134768 16757646 ~ 16775305 (+)
LOC120570363 NA coding downstream 163 16919996 ~ 16929385 (+)
rdh1 LOC102203631,LOC106926445,LOC103461719,LOC103134343,LOC100699208 coding downstream 10289 16930122 ~ 16938095 (+)
bbs5 bbs5 coding downstream 106532 17026365 ~ 17030715 (+)
klhl41a klhl41 coding downstream 111327 17031160 ~ 17035529 (+)
ppig ppig coding downstream 122049 17041882 ~ 17049327 (+)
G124430 NA non-coding upstream 206144 16703371 ~ 16703929 (+)
G124407 cobll1 non-coding upstream 277732 16598643 ~ 16632341 (+)
G124408 NA non-coding upstream 279959 16596708 ~ 16630114 (+)
LOC120570498 NA non-coding upstream 441437 16468040 ~ 16468636 (+)
G124371 kcnh7 non-coding upstream 493621 16414609 ~ 16416452 (+)
G124524 lrp2 non-coding downstream 36892 16956725 ~ 16957914 (+)
LOC120570570 NA non-coding downstream 86752 17006585 ~ 17008508 (+)
LOC120570569 NA non-coding downstream 90312 17010145 ~ 17011912 (+)
G124627 tlk1,LOC102777640 non-coding downstream 337009 17256842 ~ 17257502 (+)
G124631 NA non-coding downstream 341904 17261737 ~ 17262826 (+)
dap1b dapl1 other upstream 808431 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 932199 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1249059 15618514 ~ 15661014 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other upstream 1336225 15506984 ~ 15573848 (+)
trpm2 trpm2 other upstream 1751136 15137587 ~ 15158937 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 68238 16988071 ~ 17023560 (+)
myo3b myo3b other downstream 208048 17127881 ~ 17198590 (+)
hoxd10a hoxd10,LOC102792757 other downstream 940327 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 1090924 18010757 ~ 18017413 (+)
G125079 NA other downstream 1783195 18703028 ~ 18704528 (+)

Expression


Co-expression Network