Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120570421 |
| gene name | lss,LOC104947466 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053123.1 |
| NCBI id | CM020920.1 |
| chromosome length | 39440604 |
| location | 5114326 ~ 5115705 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| lss | Predicted to enable lanosterol synthase activity. Predicted to be involved in cholesterol biosynthetic process. Predicted to act upstream of or within triterpenoid biosynthetic process. Predicted to be active in lipid droplet. Is expressed in several structures, including heart; integument; liver; pleuroperitoneal region; and skeletal muscle. Human ortholog(s) of this gene implicated in alopecia-mental retardation syndrome 4; cataract; cataract 44; and hypotrichosis 14. Orthologous to human LSS (lanosterol synthase). |
| description |
|---|
| PREDICTED: lanosterol synthase-like |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016866 | intramolecular transferase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039818767.1 | True | 782 | mRNA | 0.51 | 5 | 5114326 | 5115705 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pms1 | pms1 | coding | upstream | 82438 | 5001871 ~ 5031888 (+) |
| adat3 | adat3 | coding | upstream | 116389 | 4986533 ~ 4997937 (+) |
| alkbh6 | alkbh6 | coding | upstream | 120517 | 4991670 ~ 4993809 (+) |
| LOC120569565 | NA | coding | upstream | 198821 | 4898524 ~ 4915505 (+) |
| stat4 | stat4 | coding | upstream | 220263 | 4872317 ~ 4894063 (+) |
| LOC120569312 | NA | coding | downstream | 3433 | 5119138 ~ 5125387 (+) |
| cnot9 | cnot9,LOC103372475,LOC106524050 | coding | downstream | 116665 | 5232370 ~ 5242872 (+) |
| LOC120570455 | plcd4,LOC103372476 | coding | downstream | 128433 | 5244138 ~ 5265908 (+) |
| LOC120570203 | LOC103368839,LOC101465291,LOC102206386 | coding | downstream | 173378 | 5289083 ~ 5296603 (+) |
| tns1b | tns1 | coding | downstream | 188861 | 5304566 ~ 5552162 (+) |
| G122148 | NA | non-coding | upstream | 140589 | 4972851 ~ 4973737 (+) |
| G122142 | NA | non-coding | upstream | 167718 | 4944733 ~ 4946608 (+) |
| G122120 | NA | non-coding | upstream | 267171 | 4845327 ~ 4847155 (+) |
| G122115 | asnsd1 | non-coding | upstream | 294890 | 4818615 ~ 4819436 (+) |
| G122106 | NA | non-coding | upstream | 341933 | 4771055 ~ 4772393 (+) |
| G122235 | NA | non-coding | downstream | 2333 | 5118038 ~ 5173231 (+) |
| LOC120569313 | NA | non-coding | downstream | 3518 | 5119223 ~ 5122660 (+) |
| G122266 | usp37 | non-coding | downstream | 100095 | 5215800 ~ 5216949 (+) |
| G122317 | NA | non-coding | downstream | 171769 | 5287474 ~ 5288145 (+) |
| G122319 | NA | non-coding | downstream | 180949 | 5296654 ~ 5297055 (+) |
| LOC120569936 | LOC102781033,LOC104920804 | other | upstream | 44078 | 5060001 ~ 5070248 (+) |
| fkbp7 | fkbp7,LOC102196462,LOC104949636 | other | upstream | 131347 | 4974789 ~ 4982979 (+) |
| G122128 | NA | other | upstream | 218824 | 4894785 ~ 4895502 (+) |
| zgc:136439 | LOC103367146,LOC106581848,LOC101483704 | other | upstream | 296187 | 4816089 ~ 4818139 (+) |
| G122036 | NA | other | upstream | 393483 | 4718285 ~ 4720843 (+) |
| G122226 | NA | other | downstream | 48528 | 5164233 ~ 5165898 (+) |
| ybey | ybey | other | downstream | 93397 | 5209102 ~ 5211902 (+) |
| G122588 | NA | other | downstream | 2030920 | 7146625 ~ 7149039 (+) |
| hdac4 | LOC103356262 | other | downstream | 3054995 | 8170700 ~ 8316693 (+) |
| G122846 | NA | other | downstream | 3679748 | 8795453 ~ 8796746 (+) |
