srpx (srpx,LOC102777533)


Basic Information

Item Value
gene id srpx
gene name srpx,LOC102777533
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20775078 ~ 20792247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818777.1
CTGGAGCAAGAGGCGGGCCTTTGGAAAGCAGGAATGCGCTGGAAGTTTTCCTGCAAGCTCCCTCTTCACATGTTGAAGAGTCCCGCGTCTCGATATGGACATGTGGCCGCTGGTGCTCCTGTTCGTCCAGCTCTGCTTCTGCTCCGGTTATGAAGGGTCAGGACAGTACGCCTACGGAGATGACGAGGACTGGTATTCCCGTAGATATAAAGGGACTCCGTGGTGCACGCCCATTAAGGTGAAACATGGGGATGTGAGCTGTCGCACATCCAGAGGAGAACACTACAGGAACGTGATGGGGACTCGCTGTAAAATCCGCTGCAAGCAGGGATACGAGTCCCAGAGCTCAGAGGTGGTGTGTATGGCCAGCAAACACTGGTCCTCTAACTACGCCTGCCGAGAGATCCGATGTCCCAAGCTGGACATGCCCGTTAACGGCGGCTACAAGTGTTCAGATGGCTCCTACTTCAACTCTCGCTGTGAGTTCTTCTGCTCTGCTGGATTCAGTCTGAAGGGCCAGAAGATAGCAACCTGCCAGCACAGCAAATCATGGAGCGCCGGAGTTCCCATCTGTGTTGatATGGATCCTCCAAAAATCAAGTGTCCTAATCTGAAGGATAAGTGGGCAGAGCCAGGAAAACTGACAGCGAGGGTGACCTGGGACACACCAGAGGGTGTAGACACTGCAGATGGCATCCTTACAGATGTTACCCTGAAAGGGAAACCTTCAAAATCAGACTTCCCAGAGGGCCTCCATAAGATGTCCTACACTGTGTTTGACCGTGCAGGGAACAAAGGATCCTGTCGCTTCACTGTCCGAGTGCGAGTGCGCCGCTGCAGCCCACTGTTTGCCCCTGACAACGGTTATATGAAGTGCGACAGTGACGGAGACAACTATGGTGCCACTTGTGAGTTCACTTGCACCGGCGGCTACGAGCTTCAGGGCAGCGCTGCCCGAGTGTGTCAGTCTGGACTCACCTGGTCTGGCTCAGACACCACCTGTGCAGCCATGAACATTAACGTGGGAGTGCGTACAGCTGCTGCACTGCTGGACCAGTTCTATGAGAAGCGACGGCTCCTCATTATCTCGGCCCCAACGGCTGCCAATCATAACTATCGCTTCCAGATGACTAACTTACAGCACGCTCAGTGTGGCCTGGACCTGAGGCATGTCACAGTAATTGAGCTGGTTGGGACTTACCCTGCGCAGATTGGCCGAATTCGACACAGGCTGCTCCCTCCAGCACTGGCCCTGCAgatcagGATACTGCTACGGATTCCTCAAAGGTCTTTCCAAATGGTGCTGGTAGACAAGCAGGGCATGGACAAGCAACGCTACCCGTTCCCGATCACATCGGCTGAATTATTCACCACCATCGACACCTTCCCCCTCCGCAAGGATGAGATGGTGCTACAGCAGGAAGCGGGCCAGAACTGTCAATCATAAAACACGTCCACAGACTCTCAGCCATTGTTGATCCTTCTCCCTCTCAGTCTCAGCAGACAGAGCTTCTGTTTCTAACTTGTCAAACACTACCTGAACTCATTTAGTCCGgtttccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgatctgAAGCATTATTGAAAGAGGCTGACTAAATGGAACAGgtcatacagtacattacaatCATATTGATTCCTGTGTCTTGTCTATttgtatgttttattattattattattattattaataatattttcaaaccagaaatatgttttactattttgtacaaaaaaagtattttaaccTTATGAACTGGGAAACTCTTCACCTGTTTAATATTTATATCTCACATCTTTTAATAATGATGTACACTCTCTggaatactgtgtgtgtgtgtgtgtctgtgtgtttaatgtacAGGAGAGTGATGCTGCTCTGTTACTACGCTGTACATCTATGTCTGAATTTACAAGACACTGATTAAATGTTTATCATCAAGGA
>XM_039818778.1
TCTGGAGCAAGAGGCGGGCCTTTGGAAAGCAGGAATGCGCTGGAAGTTTTCCTGCAAGCTCCCTCTTCACATGTTGAAGAGTCCCGCGTCTCGATATGGACATGTGGCCGCTGGTGCTCCTGTTCGTCCAGCTCTGCTTCTGCTCCGGTTATGAAGGGACTCCGTGGTGCACGCCCATTAAGGTGAAACATGGGGATGTGAGCTGTCGCACATCCAGAGGAGAACACTACAGGAACGTGATGGGGACTCGCTGTAAAATCCGCTGCAAGCAGGGATACGAGTCCCAGAGCTCAGAGGTGGTGTGTATGGCCAGCAAACACTGGTCCTCTAACTACGCCTGCCGAGAGATCCGATGTCCCAAGCTGGACATGCCCGTTAACGGCGGCTACAAGTGTTCAGATGGCTCCTACTTCAACTCTCGCTGTGAGTTCTTCTGCTCTGCTGGATTCAGTCTGAAGGGCCAGAAGATAGCAACCTGCCAGCACAGCAAATCATGGAGCGCCGGAGTTCCCATCTGTGTTGatATGGATCCTCCAAAAATCAAGTGTCCTAATCTGAAGGATAAGTGGGCAGAGCCAGGAAAACTGACAGCGAGGGTGACCTGGGACACACCAGAGGGTGTAGACACTGCAGATGGCATCCTTACAGATGTTACCCTGAAAGGGAAACCTTCAAAATCAGACTTCCCAGAGGGCCTCCATAAGATGTCCTACACTGTGTTTGACCGTGCAGGGAACAAAGGATCCTGTCGCTTCACTGTCCGAGTGCGAGTGCGCCGCTGCAGCCCACTGTTTGCCCCTGACAACGGTTATATGAAGTGCGACAGTGACGGAGACAACTATGGTGCCACTTGTGAGTTCACTTGCACCGGCGGCTACGAGCTTCAGGGCAGCGCTGCCCGAGTGTGTCAGTCTGGACTCACCTGGTCTGGCTCAGACACCACCTGTGCAGCCATGAACATTAACGTGGGAGTGCGTACAGCTGCTGCACTGCTGGACCAGTTCTATGAGAAGCGACGGCTCCTCATTATCTCGGCCCCAACGGCTGCCAATCATAACTATCGCTTCCAGATGACTAACTTACAGCACGCTCAGTGTGGCCTGGACCTGAGGCATGTCACAGTAATTGAGCTGGTTGGGACTTACCCTGCGCAGATTGGCCGAATTCGACACAGGCTGCTCCCTCCAGCACTGGCCCTGCAgatcagGATACTGCTACGGATTCCTCAAAGGTCTTTCCAAATGGTGCTGGTAGACAAGCAGGGCATGGACAAGCAACGCTACCCGTTCCCGATCACATCGGCTGAATTATTCACCACCATCGACACCTTCCCCCTCCGCAAGGATGAGATGGTGCTACAGCAGGAAGCGGGCCAGAACTGTCAATCATAAAACACGTCCACAGACTCTCAGCCATTGTTGATCCTTCTCCCTCTCAGTCTCAGCAGACAGAGCTTCTGTTTCTAACTTGTCAAACACTACCTGAACTCATTTAGTCCGgtttccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgatctgAAGCATTATTGAAAGAGGCTGACTAAATGGAACAGgtcatacagtacattacaatCATATTGATTCCTGTGTCTTGTCTATttgtatgttttattattattattattattattaataatattttcaaaccagaaatatgttttactattttgtacaaaaaaagtattttaaccTTATGAACTGGGAAACTCTTCACCTGTTTAATATTTATATCTCACATCTTTTAATAATGATGTACACTCTCTggaatactgtgtgtgtgtgtgtgtctgtgtgtttaatgtacAGGAGAGTGATGCTGCTCTGTTACTACGCTGTACATCTATGTCTGAATTTACAAGACACTGATTAAATGTTTATCATCAAGGA

Function

symbol description
srpx Is expressed in notochord; pharyngeal arch 3-7 skeleton; and splanchnocranium. Orthologous to human SRPX (sushi repeat containing protein X-linked).

NR:

description
PREDICTED: sushi repeat-containing protein SRPX

GO: NA

KEGG:

id description
K23818 SRPX; sushi repeat-containing protein SRPX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818777.1 True 1978 mRNA 0.49 10 20775078 20792246
XM_039818778.1 False 1922 mRNA 0.49 9 20775078 20792247

Neighbor

gene id symbol gene type direction distance location
LOC120569295 grpr,LOC103352898,LOC100697445,LOC101071331,LOC101471274,LOC102795360 coding downstream 55315 20715586 ~ 20719763 (-)
LOC120569729 LOC103352860,LOC100709268 coding downstream 110194 20649268 ~ 20664884 (-)
u2af1 LOC103352857,LOC103391595 coding downstream 138473 20630090 ~ 20636605 (-)
cbsb NA coding downstream 163417 20589788 ~ 20611661 (-)
ankrd10b ankrd10,LOC102292027 coding downstream 259875 20499453 ~ 20515203 (-)
rpgra NA coding upstream 3470 20795717 ~ 20809233 (-)
dcaf6 NA coding upstream 32527 20824774 ~ 20850992 (-)
rpl24 rpl24 coding upstream 68967 20861214 ~ 20865558 (-)
LOC120570677 NA coding upstream 71538 20863785 ~ 20863953 (-)
me3 me3,LOC103391678,LOC107389821 coding upstream 93402 20885649 ~ 20899445 (-)
G125784 NA non-coding downstream 15853 20757707 ~ 20759225 (-)
G125720 NA non-coding downstream 61929 20710865 ~ 20713149 (-)
G125708 NA non-coding downstream 77838 20691897 ~ 20697240 (-)
G125703 NA non-coding downstream 88165 20686696 ~ 20686913 (-)
G125701 NA non-coding downstream 90668 20683895 ~ 20684410 (-)
G125800 NA non-coding upstream 67352 20859599 ~ 20859991 (-)
G125839 NA non-coding upstream 118323 20910570 ~ 20910806 (-)
G125845 NA non-coding upstream 160685 20952932 ~ 20953578 (-)
G125848 NA non-coding upstream 181985 20974232 ~ 20976915 (-)
G125852 NA non-coding upstream 204245 20996492 ~ 20998787 (-)
LOC120570047 dynlt3 other downstream 36758 20734550 ~ 20738320 (-)
G125620 col4a2 other downstream 307893 20464109 ~ 20467185 (-)
G125619 col4a2 other downstream 313449 20459162 ~ 20461629 (-)
si:ch211-214p13.7 NA other downstream 851343 19921268 ~ 19923735 (-)
LOC120570223 NA other downstream 978858 19790052 ~ 19796220 (-)
G125842 NA other upstream 161414 20953661 ~ 20960064 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other upstream 186754 20979001 ~ 20986633 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other upstream 318940 21111187 ~ 21149005 (-)
ecrg4a Augurin-B,LOC103352889 other upstream 400661 21192908 ~ 21198088 (-)
c12h2orf49 NA other upstream 484675 21276922 ~ 21279859 (-)

Expression


Co-expression Network