sp3a (sp3)


Basic Information

Item Value
gene id sp3a
gene name sp3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17567417 ~ 17575561 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818790.1
CCCACCCTTTGTGTTACCTACCGCCCGTCAatcaaaatagaaaaaaatctgACAGTTATCACCTATTTCTACGCGTATACAATCAATTTCATTTGCTGATCATGTCCGGTGGCTTGTGACTATCAGGACTTTACGTTTAAAGACAAGGCACGTAATGACTGCCCCAGAACAGCCGATGAAACCAGAAGATATGGCTGCCTTGGACGTGGACAGCAGTCAAAGCGACTTTCTGCAGCAGGAGCAAGGCGGGGGCAATCAGACATCAGATCCATCTACGCAACTAACTGGGACAGAGAAATGGGAGGTGTTAACCCCCACAACAGCAGCAAAGGATGAATCTGGAATGATACAGATCCAAAGTCAAGGAATATTAACATCAAACGGACAGTATGTTCTTCCTCTCCAGAACTTACAAAGTCAGCCAATCTTTGTGACATCTGGAACAGATGCCTCCTCTGCCAATTCAGTGCCTAACATTCAGTACCAAGTAATTCCTCAAATTCAGACAGCAGATGGACAACTGAGCTTCACAACGGGCGTGGAAGGAGCGACTCTGACTCAGGATGCCACAGGGCAGATTCAGATCTTGCCTGAAGGTAGCCACAGTCTCAGTGTAACATCAACTGCAAACATCCTTAATAACAACCAGAACCTCATATCACAGACTGGTAATGTCCAGCAGCTCCAGGGGGTTTCTCTTAGCAGCTCCACCTTCAACAACCAGGGTCAGGTTGTTACTAATGTGCCTGTGGGTTTGCCTGGGAACATTACTTTTGTTCCTATTAACAGTGTGGACTTGGACTCCCTTGGCCTCTCTGGTGCTCAGACTATAGCAACAGGGGTCACTGCTGATGGCCAGCTAATTATGACGAGTCAGCCTGTGGATGGCTCAGAGAGTCTGGCGAAGACAGATAATCACCTCTCACAGACACTACAAGTAAATGACTCAAATGCAAATCATGAGATCTATGTGCCAACGTCTTCCTCTCAGCTACACATTCCAGCGAACGAATCTGGTCTGCTGACACAAGACACTTCATTGTCATCAGCGGCTACAGAGCAAGGCGACTCAAGTTCTGGTCTCCAGGAGGGCTTCATCCAACAGAACCAAGAGCAGAGCATCCAGGTGTCCTCCGCTCAGTCCATCATCCAGCTGCAGCAGGTGCCTATTCAGACCACCAATGGTCAGGTGGTCCAGTCCATGGCGACAGGCGGGCAGAACCTGCAAAACGTGCAGCTGATCAATCCGGGAACCTTCATCATCCAAGCCCAGACGGTCACGCCGTCAGGTCAGATACAGTGGCAGACCTTTCAGGTGCAGGGAGTGCAGAACCTGCAGAACCTCCAGCTGCCCACAACACCACCCCAGCAGATAACCCTGGCTCCAGTCCAGACCCTGTCACTGGGTTCCAGTCCAGTCAGCATCAGCACGGGACAGATGCCCAACCTGCAGACAGTGACGGTCAACACAATGGCCCAACAAGGAGATGCAGACAACCCTGGAGAGATTCGGATAAAAGAAGAGCCCGATTCTGGAGAGTGGCAGCTAAGCACCGACTCTACCCTGAACACAAGCGATCTGTCCCACCTTCGCGTCAGGCTGGTGGATGAGGAGGATCAGTTGGGTCAGGAGGGCAAGAGGCTGCGCAGAGTGGCGTGTACTTGCCCCAACTGTAAAGAGTCAGGTGGGAGAGGATCCAGCACAGGGAAGAAAAAGCAGCACATCTGCCACATTGCCGGCTGTGGGAAAGTATATGGAAAGACATCGCACCTGCGAGCCCACCTGCGCTGGCATTCAGGGGAGCGACCTTTTGTTTGCAGCTGGATGTTTTGTGGGAAGAGGTTCACACGCAGCGACGAGCTGCAGAGACAcaggagaacacacacagGAGAGAAGAAGTTTGTCTGCCCAGAATGTTCCAAGCGTTTCATGCGGAGCGACCACCTGGCGAAGCACATTAAAACTCATCAGAACAAAAAAGGCGTGAACTCTGGCAGCGCTGTGGTGGCCTCGATGGAATCGGCGGGGTCCTCAGACAGTATCATCACCACGGCAGGCGGGACCACCCTCATCCTCACCAACATCCAGCAGGGTTCCAGCAACGCCCAGGACATCCTGGCCAACGCAGAGATCCCTCTCCAGCTCGTCACCACGGTAGCGGCCAGCGATGTCATGGAGTGATTTACACTCCACTTATGAACTTCTACAACCTCTCTCATACTGTATACTCCtacctgcattttttttttcaagtttcgaagaaaaactaaaattataagtatatatatataaatatatatatattttaacacaGAAATAGTCAGTCCATGTCCATACTCGGTTTTTATTAAGGACTAATAGTGGAGACTAAAAGAAGATAAAGGTGAAAAAGACATTGCAGTAAACACACAAGGAAATGCCTTATTTTGTACAATATTGTGTCGTCGGAAATGTAGGATGCCATTTTGTTTTGAATctacttatttttttgttagtgtttttcacaaaaaattattGGTAAGttgagcgttttttttttgatgGTATATTGTAATGATGTCCTTGGTTTGTTCCATCCTTTGAGCAAATACTAAATCTCACAACAGAGCTAATTTTATCCAGCTAAAGTAATGTTATTGCTTACGTCCATGCAAATGTATTCATGTTATGGCGTTTTTGTTTcaatattatgctttttttttttttttttcctgcttgcAGTCAGTCTGCTTGCAAATTAGCGCGACCTCCTTCCTCcagttttttaaaaactttgttCACACCTGCTACATTTTGCAGGTGAAAAATCTAAACAATCACAATTTTGTATTGTAATTCCTCTTGAACATATACTGTTGATATGATACACATTATTTGCTTATTAAATATTTTGACTGAACAGCTATTTATATTGGGCTTTAcctagaaaatgcatttgtgATATTAAAAGTCCAAAATATTTCAAATGGCTCCATTATGtgtaatttaaatgtgtttttgtaaaaaccTTGTTGGAGGATTTCAAAAAACAGTCATTGTAATATGAAGAAGagaagccattttttttttgaggtAATTGCCAAATTTGACTACAAACTCAGGGTgacttgtgtctgtgtgatatAATTAGAGTAAATCACTCCTGTAGCTTCTCGAGCCATGGTGGTGATGTTGTGATGAAATGTTATTTGATGATGGACCAAAAGCTGAGGTGAATTAAGCTGTCACCACGTTACCAATGCTCGTTGAATTCTACCATGTCAGTTTTTACGATGAGGACAACCCCTGTTCATATTATAGAAACAGCTTTGCAGAATTCTCGCCAGTGTCTTGCTCCATCATGCATTTGGAAAAATGTATAACTGAAAGCGGTACTCTTTTTAAGAGCACTATTCTCATCACTTTCATCTTGTTGTTAATCCTTTtgtataaaaaatgttttgtatacTTCCCAAGAACCTGTCCTTTATATTCATTTTTAGTAAATGTACCATATTTCAGTTTTTGTGTTAATACTTTTTCTTTAACTATATCTTCCAtgatattatgttttattttatctctGAACCCCTCCCTTCTCCCCCCCCAACTGTTGAATTGTTAAATTGAATACACACTGAACAGTGAATTATGGTGGCATATTTGATTAGATTTCCAATTCTTTTGTGATACATAATGAAAATTATgtgatgtgattttttttttttttttttttgctcacatGGACATGTCCTCTTCAGGAGATTATACTTAACCCCCATTATTAAATTTGTACTAAACACTGAAGGTTTGTTCTCACTCAAAATTCTGTATAAATATGTCCATATAATAACATCAATATAAACCTTTCTGTTACACTTGAA

Function

symbol description
sp3 Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of chromatin and protein-DNA complex.

NR:

description
transcription factor Sp3-like isoform X5

GO: NA

KEGG:

id description
K09193 SP3; transcription factor Sp3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818790.1 True 3864 mRNA 0.43 6 17567417 17575561

Neighbor

gene id symbol gene type direction distance location
ppp1r9ala NA coding downstream 109049 17432590 ~ 17458368 (-)
nup62l nup62,LOC104948257 coding downstream 143088 17421867 ~ 17424329 (-)
dlx2a dlx2,LOC102799862 coding downstream 180418 17384763 ~ 17386999 (-)
slc25a12 slc25a12,LOC102297988 coding downstream 242829 17304771 ~ 17324588 (-)
mettl8 mettl8 coding downstream 289534 17271740 ~ 17277883 (-)
LOC120569548 ola1,LOC100700376 coding upstream 5909 17581470 ~ 17629519 (-)
cir1 cir1 coding upstream 61238 17636799 ~ 17642646 (-)
gpr155a gpr155 coding upstream 72582 17648143 ~ 17658404 (-)
LOC120569555 chrna1 coding upstream 84609 17660170 ~ 17668404 (-)
chn1 chn1 coding upstream 96653 17672214 ~ 17682844 (-)
G124691 NA non-coding downstream 216671 17347911 ~ 17350746 (-)
G124673 NA non-coding downstream 229157 17248369 ~ 17338260 (-)
G124695 NA non-coding downstream 272777 17291927 ~ 17294640 (-)
G124693 NA non-coding downstream 276979 17287949 ~ 17290438 (-)
G124679 NA non-coding downstream 337301 17227899 ~ 17230116 (-)
LOC120569506 NA non-coding upstream 161723 17737284 ~ 17822487 (-)
G124872 NA non-coding upstream 446848 18022409 ~ 18023477 (-)
G125000 NA non-coding upstream 516766 18092327 ~ 18092530 (-)
LOC120569840 NA non-coding upstream 633177 18208738 ~ 18211956 (-)
LOC120570508 NA non-coding upstream 1240285 18815846 ~ 18819321 (-)
fastkd1 fastkd1,LOC102780871 other downstream 525045 17035373 ~ 17042372 (-)
LOC120570068 LOC103362129,LOC101485094 other downstream 1177523 16381250 ~ 16389894 (-)
gcgb gcg other downstream 1186652 16378488 ~ 16380765 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other downstream 1344681 16207690 ~ 16222736 (-)
G124303 dapl1 other downstream 1465824 16099278 ~ 16101593 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other upstream 537549 18113110 ~ 18115097 (-)
prkra prkra other upstream 581171 18156732 ~ 18163749 (-)
G125089 dct,LOC102781940 other upstream 1119919 18695480 ~ 18699802 (-)
G125090 NA other upstream 1125326 18700887 ~ 18704677 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 1656426 19231987 ~ 19258846 (-)

Expression


Co-expression Network