cnot9 (cnot9,LOC103372475,LOC106524050)


Basic Information

Item Value
gene id cnot9
gene name cnot9,LOC103372475,LOC106524050
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 5232370 ~ 5242872 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818826.1
CTGGATTAGCTATGTTATCTGTTCAATAGTGGTCAAGCGCTCGAGGCTGTTGTCGATACAGATAAATGAAAATATTAACGTTTTGTTATCGCAATGAAGTTACGTTCCTTGTAATGTTAACGTTCGCGCGTAACTACTGGATTCCGTTTCTCAATACGTAAaacgctagcagctagctagctagctgggctaacgttagctgcctGCACTGTGTGTTAGTTACGCCAAGTTTGTTTTATTGCAGCCACATAAGTTTGCCACTACACCCCAGTTCAGCTGATATAGTAGTTTTAACAACACATTGGGACCACAAAGAGCTTCAGAGAATGCTGGCGACGGGAGCAGGATCTCCAACGAAGCTTCAAATAAAGGCTGTAACTAACGTCACAGCCCTGGCCCAGGTAGACCGGGAGAAGATCTACCAATGGATCAATGAGTTGTCCAGTCCAGAGACCAGAGAAAATGCCTTGCTGGAGCTAAGCAAGAAACGCGAGTCTGTGCCAGACCTGGCACCAATGCTCTGGCACTCCTGTGGCACTATTGCTGCCCTGTTGCAGGAAATAGTGAACATCTATCCGTCTATAAATCCACCTACGCTTACAGCTCACCAATCTAACAGAGTGTGCAATGCCCTGGCACTTCTGCAGTGTGTTGCCTCACACCCGGAGACACGGTCAGCTTTTCTTGCTGCTCACATCCCTCTTTTCCTTTACCCTTTCCTGCACACTGTGAGCAAAACACGTCCGTTTGAGTACCTGCGACTTACCAGCCTCGGAGTCATAGGTGCCTTGGTCAAAACCGATGAACAAGAAGTGATTAACTTCCTCCTCACCACTGAAATCATCCCGCTGTGTCTCCGCATCATGGAATCAGGGAGTGAGCTCTCCAAGACGGTTGCTACTTTCATACTGCAGAAGATCTTGCTGGATGACACAGGGCTGGCCTATATATGTCAGACGTATGAACGTTTCTCCCATGTGGCCATGATTCTTGGCAAAATGGTGCTCCAGCTCTCTAAAGAACCATCAGCTCGCCTGTTGAAGCATGTTGTTCGCTGCTACCTTCGCCTCTCGGACAATCTCAGAGCCAGAGAGGCCCTGCGTCAGTGTCTGCCAGACCAGCTGAAAGACAGCACCTTTGCCCAGGTGCTGAAGGACGACACCACCACCAAGCGCTGGCTGGCACAGTTGGTCAAGAACCTGCAGGAGGGCCAAGTCACCGACGCTAGAGGCATCCCACTGGCTCCGCAGTGATGAGGACAGATTGTGTTTTCAGCTGACACAGAAAGACTCTCATCACTGCCTAGATTTTGTATTTTGCCATATGCGGCGCTGAGACTGTCTACAAAGTGAAGGACATAATAGAGGAAGATTTGCTTTTGGATACATAATTTACACCAGTTTTACTGCCAGTATGTCACTTCCACAAACAAAGTCCCGACTCCACAActgaaaaatagttttttaaagaGCCAGACTGATCGAAGATTTTCAAAGCCGATACTGATAACTGATATTTGACAATAATTTAATCCAATAATGAAATATTGGCTGGTATTTGTTTATGACGTTAATGTTTTTGGCAAGATCCaaaatgaaaagtttttttgagtgtgatatttttaaagtttgaaaCAAAAGATTTCACTATCAAAACAATCCAAAAAAAACAGTCCTTTTTGAACAGAGAAATGCAAAAGACttgaaataagaaaataatggtcaaaaacatttattgctGCAGTTAACCACACGGCAATGTCTATCTGGATGTCTGTGTCGGTTGTTAATATCAGCGCTTCCAAAATATCGGTCAGCTCTAGCTTTTCCTGTTTCTCACTGTAATTTCCTGTAACATTCCACTTCAAAgtaggaattttttttttttttttcttgcatttcAAATAAGACTTTTAAACCTTTATGACTGGGTGTGTCTCCTTTTTTTGCTAAGCTCCTGTGATCTGATTTCACAGTATATACAGCAGTTTAGTGAAACAGTGGATGTATTTCTCTATAGTTTTGTGTTTAAGGGCTTTGTATGTGGAGGCCCAGTAATGCATAAATGATCTCTGTCCAGAGTGAAATCTCAGCAGTTGGTCTTGTTTAAGATATTTTAGAAATAAACTGTTTTCAAAGTGAA
>XM_039818827.1
GATTAGCTATGTTATCTGTTCAATAGTGGTCAAGCGCTCGAGGCTGTTGTCGATACAGATAAATGAAAATATTAACGTTTTGTTATCGCAATGAAGTTACGTTCCTTGTAATGTTAACGTTCGCGCGTAACTACTGGATTCCGTTTCTCAATACGTAAaacgctagcagctagctagctagctgggctaacgttagctgcctGCACTGTGTGTTAGTTACGCCAAGTTTGTTTTATTGCAGCCACATAAGTTTGCCACTACACCCCAGTTCAGCTGATATAGTAGTTTTAACAACACATTGGGACCACAAAGAGCTTCAGAGAATGCTGGCGACGGGAGCAGCTGTAACTAACGTCACAGCCCTGGCCCAGGTAGACCGGGAGAAGATCTACCAATGGATCAATGAGTTGTCCAGTCCAGAGACCAGAGAAAATGCCTTGCTGGAGCTAAGCAAGAAACGCGAGTCTGTGCCAGACCTGGCACCAATGCTCTGGCACTCCTGTGGCACTATTGCTGCCCTGTTGCAGGAAATAGTGAACATCTATCCGTCTATAAATCCACCTACGCTTACAGCTCACCAATCTAACAGAGTGTGCAATGCCCTGGCACTTCTGCAGTGTGTTGCCTCACACCCGGAGACACGGTCAGCTTTTCTTGCTGCTCACATCCCTCTTTTCCTTTACCCTTTCCTGCACACTGTGAGCAAAACACGTCCGTTTGAGTACCTGCGACTTACCAGCCTCGGAGTCATAGGTGCCTTGGTCAAAACCGATGAACAAGAAGTGATTAACTTCCTCCTCACCACTGAAATCATCCCGCTGTGTCTCCGCATCATGGAATCAGGGAGTGAGCTCTCCAAGACGGTTGCTACTTTCATACTGCAGAAGATCTTGCTGGATGACACAGGGCTGGCCTATATATGTCAGACGTATGAACGTTTCTCCCATGTGGCCATGATTCTTGGCAAAATGGTGCTCCAGCTCTCTAAAGAACCATCAGCTCGCCTGTTGAAGCATGTTGTTCGCTGCTACCTTCGCCTCTCGGACAATCTCAGAGCCAGAGAGGCCCTGCGTCAGTGTCTGCCAGACCAGCTGAAAGACAGCACCTTTGCCCAGGTGCTGAAGGACGACACCACCACCAAGCGCTGGCTGGCACAGTTGGTCAAGAACCTGCAGGAGGGCCAAGTCACCGACGCTAGAGGCATCCCACTGGCTCCGCAGTGATGAGGACAGATTGTGTTTTCAGCTGACACAGAAAGACTCTCATCACTGCCTAGATTTTGTATTTTGCCATATGCGGCGCTGAGACTGTCTACAAAGTGAAGGACATAATAGAGGAAGATTTGCTTTTGGATACATAATTTACACCAGTTTTACTGCCAGTATGTCACTTCCACAAACAAAGTCCCGACTCCACAActgaaaaatagttttttaaagaGCCAGACTGATCGAAGATTTTCAAAGCCGATACTGATAACTGATATTTGACAATAATTTAATCCAATAATGAAATATTGGCTGGTATTTGTTTATGACGTTAATGTTTTTGGCAAGATCCaaaatgaaaagtttttttgagtgtgatatttttaaagtttgaaaCAAAAGATTTCACTATCAAAACAATCCAAAAAAAACAGTCCTTTTTGAACAGAGAAATGCAAAAGACttgaaataagaaaataatggtcaaaaacatttattgctGCAGTTAACCACACGGCAATGTCTATCTGGATGTCTGTGTCGGTTGTTAATATCAGCGCTTCCAAAATATCGGTCAGCTCTAGCTTTTCCTGTTTCTCACTGTAATTTCCTGTAACATTCCACTTCAAAgtaggaattttttttttttttttcttgcatttcAAATAAGACTTTTAAACCTTTATGACTGGGTGTGTCTCCTTTTTTTGCTAAGCTCCTGTGATCTGATTTCACAGTATATACAGCAGTTTAGTGAAACAGTGGATGTATTTCTCTATAGTTTTGTGTTTAAGGGCTTTGTATGTGGAGGCCCAGTAATGCATAAATGATCTCTGTCCAGAGTGAAATCTCAGCAGTTGGTCTTGTTTAAGATATTTTAGAAATAAACTGTTTTCAAAGTGAA

Function

symbol description
cnot9 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in negative regulation of intracellular estrogen receptor signaling pathway and negative regulation of translation. Predicted to act upstream of or within gene silencing by RNA; mRNA catabolic process; and regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Orthologous to human CNOT9 (CCR4-NOT transcription complex subunit 9).

NR:

description
PREDICTED: cell differentiation protein RCD1 homolog

GO: NA

KEGG:

id description
K12606 RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818826.1 True 2142 mRNA 0.43 9 5232370 5242872
XM_039818827.1 False 2112 mRNA 0.43 8 5232373 5242872

Neighbor

gene id symbol gene type direction distance location
LOC120569312 NA coding upstream 106983 5119138 ~ 5125387 (+)
LOC120570421 lss,LOC104947466 coding upstream 116665 5114326 ~ 5115705 (+)
pms1 pms1 coding upstream 200482 5001871 ~ 5031888 (+)
adat3 adat3 coding upstream 234433 4986533 ~ 4997937 (+)
alkbh6 alkbh6 coding upstream 238561 4991670 ~ 4993809 (+)
LOC120570455 plcd4,LOC103372476 coding downstream 1266 5244138 ~ 5265908 (+)
LOC120570203 LOC103368839,LOC101465291,LOC102206386 coding downstream 46211 5289083 ~ 5296603 (+)
tns1b tns1 coding downstream 61694 5304566 ~ 5552162 (+)
LOC120570043 NA coding downstream 324554 5567426 ~ 5570358 (+)
LOC120569854 LOC103364251,LOC104945362,LOC101061545 coding downstream 679822 5922694 ~ 5937121 (+)
G122266 usp37 non-coding upstream 15421 5215800 ~ 5216949 (+)
G122235 NA non-coding upstream 59139 5118038 ~ 5173231 (+)
G122224 NA non-coding upstream 78820 5095927 ~ 5153550 (+)
G122225 NA non-coding upstream 79487 5094624 ~ 5152883 (+)
LOC120569313 NA non-coding upstream 109710 5119223 ~ 5122660 (+)
G122317 NA non-coding downstream 44602 5287474 ~ 5288145 (+)
G122319 NA non-coding downstream 53782 5296654 ~ 5297055 (+)
G122320 NA non-coding downstream 54263 5297135 ~ 5298605 (+)
G122321 NA non-coding downstream 56002 5298874 ~ 5299221 (+)
G122349 NA non-coding downstream 317930 5560802 ~ 5561861 (+)
ybey ybey other upstream 20468 5209102 ~ 5211902 (+)
G122226 NA other upstream 66472 5164233 ~ 5165898 (+)
LOC120569936 LOC102781033,LOC104920804 other upstream 162122 5060001 ~ 5070248 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other upstream 249391 4974789 ~ 4982979 (+)
G122128 NA other upstream 336868 4894785 ~ 4895502 (+)
G122588 NA other downstream 1903753 7146625 ~ 7149039 (+)
hdac4 LOC103356262 other downstream 2927828 8170700 ~ 8316693 (+)
G122846 NA other downstream 3552581 8795453 ~ 8796746 (+)
umps umps other downstream 4677752 9920624 ~ 9928891 (+)
lrp1bb lrp1b,LOC102779748 other downstream 5093119 10335991 ~ 10618696 (+)

Expression


Co-expression Network