LOC120570493 (LOC103352916,LOC101468313,LOC102795746,LOC102303625,LOC100708288)


Basic Information

Item Value
gene id LOC120570493
gene name LOC103352916,LOC101468313,LOC102795746,LOC102303625,LOC100708288
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19524750 ~ 19549653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818876.1
CCGAAAATACTCATTAAAGGGCACTCTAGTGTATTGTACCTCCATGCTGCCTCCTTCTCTTGGTACTGCTAACCACAATGGCCAGGCTCGTATGAGGGAGCTGCCCCTGTCAGTAGCACAGACGGCTCAGCAGCGCAGCGGCTCCAGATTCACCAGGACACTGACACCGAGACGCAAGTGGGGAATATGACACACATCGGCGAAAAGAAAGGTCAATGTGGCTATTAAAGCAGCTCTCTGGGGTAGTTATCAGTCGCCGTGGATTCCTGAGGCCTGTCTCTATAGCAACCCATTCCTCCTCCTGAGTGCTGCTGCCAACTTACCCTCTCCACCACACGACAAATCTCTCCTCATCCCCCTGGCCAATCGCTGGATCTGAACTGCGTTGGAATGGACACTGAGTCGACCCACTCGGGCTACTCCTATCACTCTAGCCGCTCGGGGAGATCAAACCGACATGGGGATCGAAGTCGCGAGCGGCACAAGGCCAGCAGCAGTAAAGACAGCAGTCGCTCTGAGAGGTCCGTTGTCATCAACCCCCCTGACACGCCCTCCCAGGACTCCCCCGTTCACAATGGAGATCCGCTGCCAGGAGAACCCACACCAGCAGCAGATCAGGGAGATGAGGCCCAGGATGATAACTGGGGGGAAACCACCACCGCAGTGACAGGCACCTCAGAGCTGAGTATTTCTCAGGAGGAAGTGGTTGGACTGGGGAAGGGAATGCAGGACCGGACCGCAGGCTTCCGCCGTTATCTTCCCCTGGCTGTAGGCTCATGTGTGGGGCTGCTGGTGCTGGCCACGCCCTTGGCCTTCCTGCTTCTTCCGGCTGTAATGTGGCCAGACAGGCTGCAGGCTTGTGGCGCAGCCTGTGAGGGACTCTTCCTCTCCATCGCCTTCAAGCTCCTCATCCTCCTGTTGGCCATGTGGGCCTTGTTTCTCAAGCCAGGCCGGGCAAGCCTgcccagagtgtgtgtgtaccgtGCCTTCCTTACCACACTTACACTTCTGCTCACCATGTCTTATTGGCTCTTCTATGGGGTCCGGATCCTTGATGCACAGGATGAGGACTACCATGGGATCGTCCAGTTTGCTGTGTCCCTCGTGGACTCCCAGCTGTTTGTCCACTACCTGGCCGTGGTGCTGCTGGAGCTCCGCCACCTCCAGCCCTGCTACAGCGTCTGTGTCATCCGTTCCACAGACGGCGAGACACGTCACTACAACATAGGACAGCTTAGcaTTCAAAAGGCTGCTCTGTCCATTTTGGAGTATTACTACAGAGACTTTCCACTCCATAACCCAGCCCTTCTCTCTGCCTCTAAGCACCGGGCTGCCAAACACCTGGCCGGGTTGAAGGTGTACAATGTGGATGCTCCGGGGAACACAGCAGGAGCGCAGCCTGGTAATGGGAATCAGTCACGGGCTATGGTTACAGCTGCCGCCAAACGCAAAGACAGCGCCCACAATGAGCTGTATTATGAAGAGGCCGACTACGAGAGAAGAGTCCGTAAACGTAGAGCCAGGCTGGTGGTGGCTGTGGAGGAGGCCTTCACACATGTCCGTCGGATGAAAAAAGAGGATGAGCGTGAGACACCGTCTGACATCATGGATGTGCGTGAAGCAGCTCTGGCTATATTTCCCTCCATGGCCCGTGTGCTGCAGAAGTACCTCCGCACCACCAGGAGGCAGCACTGCCACAGCATGGAGAGCATCCAGAAGCACCTGGCTTTCTGCCTCGTTAATAACATGAGCCCTAAGGCGTTCCTCGAGGCATACCTGGCCCCTGGTCCGACCCTGCAGTACGGCCCTGAGCGCTGGATGGCAGACCAGTGGACTTTGGTCAGCGAGGCTTCTGTCACCGGCGGCATAAAGGAGGGGTCAGAGTTCCTGCTAAGATGTCTTGACTTTAGCTTAGCTGTGACCGTCAAGGGCATCCCGTACATCAGACTGACTGAGGAGTACATAGACCCCAAGTCTCACAAGTTTATACTGCTGCTCCAATCAGAAACCTCAGTTTAACGCAGTGGACCAGTGCTGCTGATCTGGACTTACAGGACTGTTACACATCTCCGACTGAATTTTTCAAACAATGACtttttgtactgttttttttgtacttttgtttaTGTAATTTCCTCACAAAGAATATCTTTGTTTCCTTGTCTTTGTCCCGAGCAACATGAAAGGTGATCAAAGACAGAAAATGGGAGGGAGTATGCTTGGATTTCTCTGTCCTGACGTTTGCAGAACACAGTTCAGGTATTCCTCTATGCACGACAGATGACCCTCACAAACcttctttttccttttatttgcaTGTGCCAGTGTGTGCCTGCGTGGGGGAGTTCATGATTTTTGAGCAGTGTGTGTGATTTAGGATGAAAAAGTatgtgttttgagtgtagcGTACACTCAGGATCTGTCTAGACCTGTCTCTTCTTTCGCCTTAGCGTTAGTGACTGGGACATTTGATATAACCTGAACCCTTTTTCTCCCAAACTACTCTTTTAGTTTTCACAACAATTATTTAACTGCCCTGTATTACagatgtatgtacagtatttatatgtgAATATACTTTATCCTTCCAGACTTTTTATATCAAAATTGTGCATtgctagattttttttttacattgtcaaAGATATGTTTTTTTACCTTGTCTGTCTGCACTGTTATTGTGGCGATAACTGTACTGTAAATAGATGAAACATGTTTGTAAATGTCAAAATCACTGGAATCTCTTGGACTGAGTGCAACCACAGTACAGCTGAATATAGATGGTTCTAGCCAATAGATTGTGAGCAAACACGTGACCACTTATTGTGTATGTACAGTCAAGTGTGTGCAGTGTACACTGATCTTTTTGTAGGCCAGCAGAGAGAACGCTATTAGGTTTATGTGGGTGACCTTTTATATCTTGTGTTAAAACTGTTGCCTTTGTgctgtttaattttaaaacatatgccACTGATTTTCATCTTAATTCATCATGAGGAGAGTGTATTGTTACAGCACCCATCTGCATAATGTAAATCATGGAGCACAAGAAAATgcataacctaacctaacctactTTCTCACCTAAATGAATAGTCACTTATTTCATGCTGGCAAGTGTTTAAACATGTGCTGCAAATGAATAATTTAGTGTAAATCAGATCAACCCAGTGTCAGTATTTCTGCTGTCAGTATTTTGTCTCAGTATCACACTACTGCCACCTATCTGCAGCTACTGGAACAGGAACACTGTCCTGAGCTTCAATCAAACTGTTGATTCGTATGAATATTTAATCTGTTTTTTTCAAACCCTTTGTATTTATGAGCACTGTTATGTTGTAAATTTATATTTACACAAGTGTTACTGTGGTCAATGATGGTGTAGTTTTGTTTAGGCTTTTAGAGTGTTGATGGTTGTAAATAGTTCTTGACTACACGTGCCTCAGTTATACATATTTAGGATGTGCTCAGCATACATGTACAgttttcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagcgagagagtgagagagagaagaaagggaaCATAATGAAGAAAAGAGATGCTTTTCCAAATACTTTGTTCCTGTCTTCTTTTATACAACAGAACATGTAAAATCACAGCAGCTGTGTCAAAgtcacatttgtaaaaaaataaatatttgtatcgacCTTTTTACGGCA

Function

NR:

description
PREDICTED: vang-like protein 1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818876.1 True 3695 mRNA 0.48 9 19524750 19549653

Neighbor

gene id symbol gene type direction distance location
LOC120570242 LOC104953981 coding upstream 3578 19517979 ~ 19521172 (+)
LOC120569695 NA coding upstream 159326 19357001 ~ 19365424 (+)
LOC120570608 anos1,LOC104963477 coding upstream 212683 19272248 ~ 19312067 (+)
gpr143 gpr143,LOC102798521 coding upstream 292858 19224122 ~ 19231892 (+)
mospd2 mospd2 coding upstream 312919 19195968 ~ 19211831 (+)
dop1b dopey2 coding downstream 34466 19584119 ~ 19605296 (+)
morc3a NA coding downstream 60454 19610107 ~ 19622078 (+)
chaf1b chaf1b coding downstream 74699 19624352 ~ 19636001 (+)
si:dkey-229b18.3 NA coding downstream 88233 19637886 ~ 19645910 (+)
bcl9 bcl9 coding downstream 112074 19661727 ~ 19693298 (+)
G125266 NA non-coding upstream 55960 19467432 ~ 19468790 (+)
G125115 NA non-coding upstream 669720 18852566 ~ 18855030 (+)
G125114 slitrk5,LOC100690770 non-coding upstream 672955 18845407 ~ 18851795 (+)
G125110 NA non-coding upstream 694842 18829619 ~ 18829908 (+)
G125109 NA non-coding upstream 695224 18828933 ~ 18829526 (+)
G125274 NA non-coding downstream 1705 19551358 ~ 19551941 (+)
G125369 NA non-coding downstream 198413 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding downstream 242356 19792009 ~ 19801958 (+)
G125397 NA non-coding downstream 349581 19899234 ~ 19899437 (+)
G125465 NA non-coding downstream 357934 19907587 ~ 19907822 (+)
igsf3 LOC103352919,LOC104967650 other upstream 65476 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 433965 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 697203 18818753 ~ 18827547 (+)
G125079 NA other upstream 820222 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 1507337 18010757 ~ 18017413 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 418707 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 604202 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 942525 20492178 ~ 20521274 (+)
mpc2b mpc2 other downstream 1303436 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 1310499 20860152 ~ 20865442 (+)

Expression


Co-expression Network