pgap1 (pgap1)


Basic Information

Item Value
gene id pgap1
gene name pgap1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4416853 ~ 4436351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818912.1
TGTTGTGACTGAGGTTCAGCCGGTGTGTTTGACAGCCTGTGCGGTGTCTTAACACGGCGAGGAGTTTACAGAATGAGAATTAAAACATGGAGATTAAACACCTGTAATATCTGAAACCCCGAGTCAGAACTCAGCTATGAAACTCGCCACTGTGGCCTTTTACGGGTTTGCTCTGGGGCTTCTGGCGGTTGGCCTGCGAGAGTTGCTGACTGGCTTCGAGGAGAACCGATGCAGTATGACCTATATGTTTGAATACCCAGAGTACCGGCGCGTGGCTCTGCCTCGGCGTGTGGCCAGGCTGTACCCAGCGTACGGCCTCTACCTGTATGGAGAGGGTCTGTACGCCCAGGAGACCCGGTCGCTCAAACTCACCGGTGCCCCTGTGCTCTTCCTGCCCGGAAATGCAGGCAGCTACAAACAAGCTCGCTCCCTGGGCTCTGTGGCCCTGAGGAAGGCTGAGAACATGGAGGGAGGTCTCCACTTCAACGTGTTCACCGTGGACTTCAACGAGGAGCTGGTGGCCCTTTACGGCGGCAGTTTGCTCAGGCAGACCCACTTCCTGCATGAGAGCATTAAGGCTATCCTGAGGCTGTACAAGCACCTGAAGACCCCCCCTCAGAGTGTGGTGCTCGTTGGTCACTCCATGGGAGGAGTGGTGGCCCGGGCGCTGTTCACTTTGCCCCGCTTCAACGCCAATCTGGTCAGCCTGATCATTACGCAGGCCTCCCCCCACCTGGCTCCAGTGCTGGCCCTGGACCCGTACCTGCTGGATTTCTACTCCGCCGTGAGACAGAAGTGGGTGAACCATGCCAAAAAGCTCAGGAATGTCACAGTTCTGTCTGTTGGGGGTGGTTACCGTGACTATCAGGTCCGCTCGGGCCTGACATCCCTACCTTGTCCCCCAGCAGACCCCAATAAGTTGTCATTGGTGGCAACTGCCGTTCCAAGGACCTGGGTGTCCACTGACCATCTGTCCATCGTTTGGTGCAAAGAGCTTGTTCttgctactgtcagggcattcTTCGACCTCATCGACCCTGAAACCAGACAGTTCACAGTAAACCCAGAGAAGAAAATGGCTGTACTAAACCATCACTTCATCAGACACCCTGTCAGGATGCTGGGAGAAACTCAAGAcacctccatctccatctcagATTTTCCTGAAGCATGGAGCGAAGTTAACACACTGCGTCTGGCTTACAGCACaccaaagGAAGGACAGGTCAAATACTTTCTCTTTGCATTGTCGAGTCGCAGGAAAGCCTACAGCCATTTCTACTGCCGGAGCAACAACATGGAGATGACTAGCTGGGTGTATGGCTGCATGCAAAAGAACGGTCCTTCATGTGTGCGTGCAGTGGATCTGTCCATGGGAACTGAGCTCCTGCCACCATACAAGGTCCTGATTCTGAGTCTCAGTGACTTATCTTCAGTTACTCATCTGGTTGTTTCGGCCTCCAACCTCAATGGCAAACAGTTCACGGTGGAGTGCGAGTGGCAGAGACAAGAATCTCAGACCGTGTCTGTCCCCGCGCCACACGTTCTGTCCTTCGGTTTGACTGTCAGCGATGTTTCCGTCAACTCCTCTGGACTTCTTcacaccatcaagctgcaagaCTTTGACCAGGTCTACCAGGCTTTCCGAATTAACGTCGCAAGCCAGTGCAAAGTACATAAAGATAGACTGCCCAACGTGTACAGAATAAATGTACCGTGGTTTCGAGAGGACTCTTTAACCACAGCCAGTGTGCCATCAGTGACCGAGATCTCAGGGATGCTCCACACAAGTCGTCCAGACAACACCTCAGGCGTCCTCCTCCAGCTCCACACTGCCCCCAACTGCCAATATAAGGTGTCAGTAAGGACTTCATTACCCAGGGTGCTGGGACAGGTACAgctttcttgtggCCCCCTGGTGCCGGTCTACACCGCTGTAACCCTCCTCCTGGCCTGTGGGGGGCAGCTGTCCTCCATCCTGGAGTCGAGGCGAGCGGCAGACATGAGCCAGGTGGTGGGCAAAGGCCTGCAGCTTCATAAAGTCAATCTGCCCGTTTATATTCTGCACATGTTACTTAGCTGTAGCTGGTTTCAAGAGATCTGGTCAATTCTTTACCTCCCCCCAATGGATGTCCTCCCCCCGACCACCCCCGATGCAACATTTCATGAGGGAGTGGTACCAGTGGAAGAATGGCCCCACCtcctgtcccctctgctttacATCTTGGGGGCAGCCGTGGCATACTGGGGCAGCGCACTGCTCCGTCTCATTATGCGACTGATCTCACTAATATTAGCTCCCCTACACAGACCGTCTGTCTCCAGAGACTGTGGCACTGTGCCACTGCGGAGCCAGCTCCTCATCACTCTCTGTCTGACTGTTGTGGGTGGGCTGTCCTGTGGGCCGTTGGCAATCGTTGCTGCCTTTCTGCTCCACCTTTACAGGGTACTGAGGCTGCAGATGACCGAACGGTCCTTGAGTCACATGTTGAATCTGGCACCCCAGAAGCGCAAAGAAGTTGAGAATGGCACAGTGGATGCCAAATCCCTGAGCAAGTCTAAAGAATGTAATGGCACCCCCCTGCTGTCCGAGTGTGCTCTGCAGGAGGTGAGGGATGACCTACAGCTCCACCTCTGCCTATCGGCGCTCTTCACACTACCCGTCATGCTCCTCGCACCTTCGCTCATCCACTGGATCCGCAACCTGAGgtattccacccAGTTGGATCCTGACCCCTGTTGGCCACACGCTGTGCCTCTAATCATTGTGTACATGCTGCTTATTAACTGCAACACTTTAAAACTCAGCAACAGTAAACTCCTGCCTCTGACATCCTGCCTCCCTCTCCCCTTGTCCATCGCCATGGTGACCTTCTCGCCACTCCACCTCTACAGAGTCACCTACTTCCTGTTGGCGGCACTCGTCCCTCTGGCCTTGTGTTGCGTGCTCTGACGGTATCGGTCTGGTTTCAGTCCACGTCTCTACCATAACAAGCCTTTCTCTAAATTACAGCCGGACTCGCTGAAGCTGCCTGAGACTGTTCCAGgaagacctactctatctagCTGCCATGGAGCAGAGCCATAGACATACATAGCTTGGGGAACTGTCTGCTCAGTGTTAGCGCTAAGAGCTCCATGGCAATTACACTATGTTTTAAGATGAGAGGATGTAATGGCCTTGGAACATTTGGTGCAAATATGGCTCCAATGGACTGACCTGAAACCAAGTTTGCCTTACTCTGTATATCTATAGCTCTGCCTTCAAGGAGCAACAACTCCACAACCAGTGAAGCTACTGATACTAGAGATTCTCAACAGGGTGTTACTCTTACAATGTGTGTTCTTTTAGTTCTTTTGTTGTTTCTAGTGTCTACAGTGGCATTGTTCACTGCGGTCACTACTCTGTAAACTCCTTCACTGCCTGCTGCTTAGCGATGACTTCTAGCTGTGTGTTATATTTACCCATTGACTGTCGTAGCACTGCCACCAAACCAGTGTCACACATTCGTTCAAGAAGAAAAATCCAAAGTAATGTTGTTTACATTCTCTCATTATCACCTTTTGCTACACAACGGTGACGAAATGAAGGTGCACTGTTAAAGGCTGTAGTGCATGTTCTAACAGGTTCTAATCCCTCTCGTATTTTTTTCGAAGAAGAGAATTATGATCTACTCCGTGCTCTCTAAAATACATCGGTGTAGCCAAACAATGTTTTGAAGGTGTGGCCAGCCTGCGAGCTGCATTCATTTTAGGGTGGCACATAAATCTGTATCTTGAtaa

Function

symbol description
pgap1 Predicted to enable phosphatidylinositol deacylase activity. Predicted to be involved in GPI anchor metabolic process and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human PGAP1 (post-GPI attachment to proteins inositol deacylase 1).

NR:

description
GPI inositol-deacylase

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006505 GPI anchor metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K05294 PGAP1; GPI inositol-deacylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818912.1 True 3783 mRNA 0.52 26 4416853 4436351

Neighbor

gene id symbol gene type direction distance location
maip1 LOC101475169,LOC100711160,LOC102305852,LOC102192410 coding upstream 413 4409864 ~ 4416440 (+)
LOC120569241 LOC103373060 coding upstream 17979 4394058 ~ 4398874 (+)
LOC120570038 NA coding upstream 22831 4378415 ~ 4394022 (+)
mlphb NA coding upstream 138242 4214424 ~ 4278611 (+)
trim63b trim63,LOC103367607,LOC102793986,LOC102215866 coding upstream 350092 4064863 ~ 4066761 (+)
hecw2a hecw2 coding downstream 13903 4450254 ~ 4512324 (+)
stk17b stk17b,LOC103370988 coding downstream 77315 4513666 ~ 4526011 (+)
ftcdnl1 LOC103370986 coding downstream 130188 4566539 ~ 4575421 (+)
LOC120569891 LOC103370984 coding downstream 150052 4586403 ~ 4675681 (+)
LOC120569284 lypd1,LOC103370990,LOC104920802 coding downstream 253463 4689814 ~ 4716613 (+)
LOC120570443 NA non-coding upstream 203093 4213388 ~ 4213760 (+)
G121941 NA non-coding upstream 220846 4195664 ~ 4196007 (+)
LOC120570435 NA non-coding upstream 284493 4084213 ~ 4132360 (+)
G122021 NA non-coding downstream 5266 4441617 ~ 4445127 (+)
G122022 LOC103376870 non-coding downstream 10744 4447095 ~ 4447339 (+)
G122024 NA non-coding downstream 11906 4448257 ~ 4448460 (+)
G122034 NA non-coding downstream 146468 4582819 ~ 4583029 (+)
G122039 NA non-coding downstream 200222 4636573 ~ 4636980 (+)
lrrfip1a lrrfip1,LOC102295012,LOC102195615,LOC100691582,LOC103370951,LOC107396304,LOC107099056 other upstream 63930 4294851 ~ 4352923 (+)
G121917 col6a3 other upstream 306420 4108030 ~ 4110433 (+)
cops8 cops8 other upstream 344739 4061037 ~ 4072114 (+)
ndufv3 NA other upstream 1445521 2962205 ~ 2971332 (+)
pde9a pde9a other upstream 1498104 2868579 ~ 2918749 (+)
G122036 NA other downstream 281934 4718285 ~ 4720843 (+)
zgc:136439 LOC103367146,LOC106581848,LOC101483704 other downstream 379738 4816089 ~ 4818139 (+)
G122128 NA other downstream 458434 4894785 ~ 4895502 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other downstream 538438 4974789 ~ 4982979 (+)
LOC120569936 LOC102781033,LOC104920804 other downstream 623650 5060001 ~ 5070248 (+)

Expression


Co-expression Network