nup62l (nup62,LOC104948257)


Basic Information

Item Value
gene id nup62l
gene name nup62,LOC104948257
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17421867 ~ 17424329 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819086.1
ACAAGACTCAGGGCTAAAATAACGTAACTAGATTTTGTTCCTAACTGCCGTCATTTCCTTTAGTCAACTACAGAAATGCCTGCTTGAATAAGTGAGAAGCAGCGGGCCACGTTTTTGTGAAGGATGTTTTGTTAGTTTTTGGTCGTCGTCTGGCTCAAGGTAACGTTAATTGACTTTATTAACCGCTTATGTCTGGAAAGTCATCGTAGGAGAGAAACTATTTCCTCTGTTACATCGGTTGAACCAGCTCGTATTTGTGCCCCGCCAAAAGCCTCAGAGAAGTTCAGCGAGGAAGTGACCATTTTGTGAGTTGGCTGTTTCCGATAACGTTATAATTAAGTCAGCCTCCTGCTAACGAAAATGAGTGGCGGATTCAACTTTGGGGGCTCCACGGGCTTCGCTTTCGGAGCTCAGAAGCCCGCCACAGCCGCAGCCCCTGGCACGGGCTTTGGGATGACCAGCTCCACACCTGCAGCCCCCGGAGGGAGCTTCGCATTTGGCACTTCCGCTCAGGCCACCCCCAACCCCAATCCTGCCGGCTCTTTCAACTTCGGCACCCCAGCGAAGAGCACAGCAGCCAGCGGAGGAGGCTTCTCTTTTGGGACCCCTACCGCCTCATTTGGAATGGGCGCTCCTcaaaccacagcagcagcacccgCAGGAATGACTTTAGGCTCAGCAGCTCCAGCTGCGGGGTCAGGGTTCACCATGGGCTCGGGTTTGTCTGCACAGACCACCGCTGCCGCCCCCGCAGGAGGGGGCTTCGCCTTTGGGACTCCTTCTCAAGCTCAACCCCAACTTGCAGCACCACCAACAGCCACAGTAACGGCGACTACAGGAGCAGGTGGCCTTTCATTCGGAGGATTTAGCTTTGGAGCAACCAAGGTCCAGGCTACCACAGCTGCAGCCCCTGTTGCAGCCCCTACTGCTGCCCCGGGAGGGGGCTTCAGCTTTGGCACCAGtgctccatccaacctcacctTGGGCGTCCAGCCCCAGCCAGCCCACACTGCTGCAACCACAGCGGGTCAGGGTGGAGGATTTGCCTTTGGGATTAAACCTTCATCAACCCCAGCTCCTCCTGCAGCGGCCCAGACAGCCCCAGCTCCAGGCCCATCTCTCTTTGCTGCACCCATCTCTACAGCTGCTGCTgtcgctgctgccactgctgctgctactgctgctgccgcAACTGCCGCTTCAACAGGTACAGGCTTTACTTTGGGTGGAGTTTCAACTTTAGCAGCAAGCACTGCTGCTGCAACGACCGCAGCAGCAGGTCTGTCGTTTATGATGAAACCTCTGGGGACAGCGACCATCACCTCCGCCTCTGCCTCCGTCCCTTCTTCCACTGTTGCAGCTGCCACAACAGGTGCTGCTACAGGCTTTACACTTGGGCTCAAACTGCCATCCAACACAAGTATATCAACTACTACAGCAGCAACCATCCCTACAAGCATTGCTCCTCCAGTGATGACCTATGCCCAGCTAGAGGGTCTCATTAACAAGTGGAGTCTTGAGCTTGAGGACCAAGAGAGACATTTCTTACAGCAGGCTACTCAGGTGAATGCCTGGGACCGCATGCTGGTGGAGAACGGTGAGAAGATCACATCCCTGCATAAGGAGATGGAGAAGGTGAAGCTGGACCAGAGGAGGCTAAACCAGGAGCTGGATTTCATCCTGTCCCAACAGAAGGAGCTGGAGGACTTACTGTGCCCGCTTGAGGAGTCAGTGAAAGAGCAAAGTGGAACCATCTACATGCAGAATGCTGACGAGGAACGTGAGAGAACGTACAAGCTTGCCGAGAACGTTGACGCACAGCTGAAGCGGATGTCGCAGGACCTGAAGGAGATCATCGAGCACCTGAACACATCCAGTGGCCCAGCAGATACCAGTGACCCActtcaGCAGATCTGTAAAATTCTCAACACCCACATGGATTCACTTCAGTGGATCGATCAGAACTCTGTTCTTCTGCAGAGAAGAGTGGAGGAAGTGTCCAAACTGTGTGACAACCAGCGTAAGGAGCAGGAGAAAACCTTTCGTTTAACATTTGACTAATCGGGAATAACTATGTTGACATGTATATTAACATAATGATCTTTTTAATGGTCTTCCTAAAGAGGGATGTCTTTTTGGGACTTGTGATGTTTTTGCAAATCCAAAACATTCATCACAACTCCTGCTAACTTGCTTTTTTCCTTCTGCTGTTTTGAGTCATTTGGTTGCATAAAGATCAATATTTTCATTGCAATAGCTTTTATAAAGAGTAGTAAATAATATGTCTGTCCCCATGTAAATGCTATGGTTGTTCTGAATAGTGTGATTAAATAAATCTTTGGATAAAG

Function

symbol description
nup62 Enables SH2 domain binding activity; signaling receptor complex adaptor activity; and ubiquitin binding activity. Involved in several processes, including microtubule organizing center organization; positive regulation of protein localization to centrosome; and regulation of cell cycle process. Located in several cellular components, including Flemming body; microtubule cytoskeleton; and nucleus. Part of nuclear pore and ribonucleoprotein complex. Implicated in primary biliary cholangitis and striatonigral degeneration.

NR:

description
nuclear pore glycoprotein p62-like isoform X1

GO:

id name namespace
GO:0005643 nuclear pore cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
K14306 NUP62, NSP1; nuclear pore complex protein Nup62

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819086.1 True 2348 mRNA 0.51 2 17421867 17424329

Neighbor

gene id symbol gene type direction distance location
dlx2a dlx2,LOC102799862 coding downstream 34868 17384763 ~ 17386999 (-)
slc25a12 slc25a12,LOC102297988 coding downstream 97279 17304771 ~ 17324588 (-)
mettl8 mettl8 coding downstream 143984 17271740 ~ 17277883 (-)
tlk1a tlk1 coding downstream 150825 17250382 ~ 17271042 (-)
mettl5 mettl5,LOC102779255 coding downstream 343742 17074358 ~ 17078125 (-)
ppp1r9ala NA coding upstream 8261 17432590 ~ 17458368 (-)
sp3a sp3 coding upstream 143088 17567417 ~ 17575561 (-)
LOC120569548 ola1,LOC100700376 coding upstream 157141 17581470 ~ 17629519 (-)
cir1 cir1 coding upstream 212470 17636799 ~ 17642646 (-)
gpr155a gpr155 coding upstream 223814 17648143 ~ 17658404 (-)
G124691 NA non-coding downstream 71121 17347911 ~ 17350746 (-)
G124673 NA non-coding downstream 83607 17248369 ~ 17338260 (-)
G124695 NA non-coding downstream 127227 17291927 ~ 17294640 (-)
G124693 NA non-coding downstream 131429 17287949 ~ 17290438 (-)
G124679 NA non-coding downstream 191751 17227899 ~ 17230116 (-)
LOC120569506 NA non-coding upstream 312955 17737284 ~ 17822487 (-)
G124872 NA non-coding upstream 598080 18022409 ~ 18023477 (-)
G125000 NA non-coding upstream 667998 18092327 ~ 18092530 (-)
LOC120569840 NA non-coding upstream 784409 18208738 ~ 18211956 (-)
LOC120570508 NA non-coding upstream 1391517 18815846 ~ 18819321 (-)
fastkd1 fastkd1,LOC102780871 other downstream 379495 17035373 ~ 17042372 (-)
LOC120570068 LOC103362129,LOC101485094 other downstream 1031973 16381250 ~ 16389894 (-)
gcgb gcg other downstream 1041102 16378488 ~ 16380765 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other downstream 1199131 16207690 ~ 16222736 (-)
G124303 dapl1 other downstream 1320274 16099278 ~ 16101593 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other upstream 688781 18113110 ~ 18115097 (-)
prkra prkra other upstream 732403 18156732 ~ 18163749 (-)
G125089 dct,LOC102781940 other upstream 1271151 18695480 ~ 18699802 (-)
G125090 NA other upstream 1276558 18700887 ~ 18704677 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 1807658 19231987 ~ 19258846 (-)

Expression


Co-expression Network