pdk1 (pdk1,LOC108240758)


Basic Information

Item Value
gene id pdk1
gene name pdk1,LOC108240758
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17424921 ~ 17430894 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819088.1
CTCTGGTTTAGCTGGCTGTGCACACTAGTACACGGTTGCTACATTCATGACTGTTAACCTATGCTGTTAACCTTAACGCATATACTAGCCTTCTTGCCATGTTGATATCTTTGGCACTCAGCTATGAGCAATTAAAGACGATTTAGAAATATGTTACGGGGACTTTGCACACATTTTACCAAATCACTCAATAACAGAACGTTCATTTCACGAGTGTGTTCTGCTGAAGTTGAGGCGTAGAAGCTAATGTTAACATAGATTAGCTAAGTATAACTGCGTGTCTGTGCTGTGGATGCCACCTGTAAACATAATAATTAAGCACCATCTGTGACACCACCTGAATAGCATTTGTCCGCCAAGCGAGCTAACACTGGAGCTGTCACAATGAGGATTTTAAGGTTTCTGAGGAACAGCGTGTCCATAGGAAAGGACATTGACTATTACTCCAAATTTTCACCCTCTCCTCTGTCAATGAAGCAGTTTCTGGATTTTGGCTCAGAAAATGCATGTGAGAAAACATCATTCGCCTTCCTCAGACAGGAATTACCTGTGAGGTTGGCAAACATCATGAAAGAGATCAACTTGTTGCCAGACAACTTGCTGAGGACTCCGTCGGTGCGTTTGGTCCAGGGCTGGTACATGCAAAGTTTTCAGGATATTCTTGAGTTCAAAGACAAAAATGCAGATGATGAGAAAGTCACATATGATTTCACAGATGCGGTAATAAAGATCAGAAATCGGCACAATGATGTCATTCCCACCATGGCTCAGGGAGTTGTGGAGTACAAGGAGACCTACGGCACAGACCCAGTCGTCAGCCAAAATCTTCAGTATTTTCTAGATCGTTTCTACATGAGCAGAATATCCATCAGGATGTTGCTCAACCAGCACACGCTCCTCTTTGGTGGGAAGGTGAAGGTGAACCCAGCTCATCCCAAACAGATCGGCAGTATTGACCCAAACTGTCGTGTCAGCGAGGTTATCAGAGATGCCTACGAAAATGCGCGAACCCTTTGTGACCGGTACTACATGAACTCTCCTGAGCTGGTGCTGGAGGAATTCACAGCCAACCCCACCGCTGTGGTCTATGTCCCATCTCATTTGTATCATATGGtgtttgaactttttaagAACGCCATGCGGGCCACCATGGAGTTATACGGCGATGCCATGGAGTATCCTGCTATCCATGCTCAGGTCGCCCTGGGAACTGAAGATCTGACCGTCAAGGTGAGTGATCGCGGAGGAGGCGTGCCGCTGCGCAAGATTGACCGGTTGTTCACCTACACGTACTCCACAGCTCCTCGACCGAGCATGGACGGGGCCCGTGCTGCTCCTCTGGCTGGTTACGGGTATGGCCTGCCCATCTCTCGACTGTACGCCCGCTACTTTCAAGGGGACCTGAAGCTGTACTCTCTGGAGGGTTATGGAACTGATGCTGTGGTCTACATTCggGCGCTCTCCACAGAGTCCATTGAGAGGCTCCCCGTGTACAACAAGTCGGCCTGGAAACATTACAAGACGATTCACGAGGCTGACGACTGGTGCATCCCCAGCAAAGAGCCAAAGGACATGACAACGTTTCGCAGTTTCTAGATCCAAATAACTGGCGCCCTATATGtagcagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattaaagctgtggtaggcaCTTCATTTTTTACCTTGTTGGGGAAAAATGTCttaataatctttcagcatattgtattTCAGTTGGtttgagagaaaactagacttctgcatcTCCTTTTGGGTTTGTTTTGAGGCTTCAGAAAATCTAGCCATCAcaggagactttggccaatcattaaattacattacatgtcatttagcggacgcttttatccaaagcgacttacaattgctatatatgtcagaggtcgcacgcctctgtagcaactatgggttaagtgtcttgctcagagctcccacaccaaaggcatgtgttatatccactgcgccatcaccaccctcaCTCACTGGTCATTTCAGAGAGCGAGAGGGTTCCAATTGGCTGTTCTGTGCATGCATTGCACCATGCGAcaaagaggggagagggagcgCTGTAAAGAAGAGGTCTCCCTCTACTCAAATTCTGGCATGTTTTGTATTCTACCCACTACAGCTAAAAGGGCTTTTCACACTGGGGGCGACACTTCACCTGCGTAGTTGCGTGGATCCGTGAGCTACTCGTGAACAGACACGGCGGACAACGCCAGGCGATCAATGTGTGGTACGCATGGAGATTCTCCtaatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggcccacccatgagagagagacatcatggctttcaaacgagcaaagtggcag
>XM_039819089.1
CTCTGGTTTAGCTGGCTGTGCACACTAGTACACGGTTGCTACATTCATGACTGTTAACCTATGCTGTTAACCTTAACGCATATACTAGCCTTCTTGCCATGTTGATATCTTTGGCACTCAGCTATGAGCAATTAAAGACGATTTAGAAATATGTTACGGGGACTTTGCACACATTTTACCAAATCACTCAATAACAGAACGTTCATTTCACGAGTGTGTTCTGCTGAAGTTGAGGCGTAGAAGCTAATGTTAACATAGATTAGCTAAGTATAACTGCGTGTCTGTGCTGTGGATGCCACCTGTAAACATAATAATTAAGCACCATCTGTGACACCACCTGAATAGCATTTGTCCGCCAAGCGAGCTAACACTGGAGCTGTCACAATGAGGATTTTAAGGTTTCTGAGGAACAGCGTGTCCATAGGAAAGGACATTGACTATTACTCCAAATTTTCACCCTCTCCTCTGTCAATGAAGCAGTTTCTGGATTTTGGCTCAGAAAATGCATGTGAGAAAACATCATTCGCCTTCCTCAGACAGGAATTACCTGTGAGGTTGGCAAACATCATGAAAGAGATCAACTTGTTGCCAGACAACTTGCTGAGGACTCCGTCGGTGCGTTTGGTCCAGGGCTGGTACATGCAAAGTTTTCAGGATATTCTTGAGTTCAAAGACAAAAATGCAGATGATGAGAAAGTCACATATGATTTCACAGATGCGGTAATAAAGATCAGAAATCGGCACAATGATGTCATTCCCACCATGGCTCAGGGAGTTGTGGAGTACAAGGAGACCTACGGCACAGACCCAGTCGTCAGCCAAAATCTTCAGTATTTTCTAGATCGTTTCTACATGAGCAGAATATCCATCAGGATGTTGCTCAACCAGCACACGCTCCTCTTTGGTGGGAAGGTGAAGGTGAACCCAGCTCATCCCAAACAGATCGGCAGTATTGACCCAAACTGTCGTGTCAGCGAGGTTATCAGAGATGCCTACGAAAATGCGCGAACCCTTTGTGACCGGTACTACATGAACTCTCCTGAGCTGGTGCTGGAGGAATTCACAGCCAACCCCACCGCTGTGGTCTATGTCCCATCTCATTTGTATCATATGGtgtttgaactttttaagAACGCCATGCGGGCCACCATGGAGTTATACGGCGATGCCATGGAGTATCCTGCTATCCATGCTCAGGTCGCCCTGGGAACTGAAGATCTGACCGTCAAGGCTGGTTACGGGTATGGCCTGCCCATCTCTCGACTGTACGCCCGCTACTTTCAAGGGGACCTGAAGCTGTACTCTCTGGAGGGTTATGGAACTGATGCTGTGGTCTACATTCggGCGCTCTCCACAGAGTCCATTGAGAGGCTCCCCGTGTACAACAAGTCGGCCTGGAAACATTACAAGACGATTCACGAGGCTGACGACTGGTGCATCCCCAGCAAAGAGCCAAAGGACATGACAACGTTTCGCAGTTTCTAGATCCAAATAACTGGCGCCCTATATGtagcagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattaaagctgtggtaggcaCTTCATTTTTTACCTTGTTGGGGAAAAATGTCttaataatctttcagcatattgtattTCAGTTGGtttgagagaaaactagacttctgcatcTCCTTTTGGGTTTGTTTTGAGGCTTCAGAAAATCTAGCCATCAcaggagactttggccaatcattaaattacattacatgtcatttagcggacgcttttatccaaagcgacttacaattgctatatatgtcagaggtcgcacgcctctgtagcaactatgggttaagtgtcttgctcagagctcccacaccaaaggcatgtgttatatccactgcgccatcaccaccctcaCTCACTGGTCATTTCAGAGAGCGAGAGGGTTCCAATTGGCTGTTCTGTGCATGCATTGCACCATGCGAcaaagaggggagagggagcgCTGTAAAGAAGAGGTCTCCCTCTACTCAAATTCTGGCATGTTTTGTATTCTACCCACTACAGCTAAAAGGGCTTTTCACACTGGGGGCGACACTTCACCTGCGTAGTTGCGTGGATCCGTGAGCTACTCGTGAACAGACACGGCGGACAACGCCAGGCGATCAATGTGTGGTACGCATGGAGATTCTCCtaatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggcccacccatgagagagagacatcatggctttcaaacgagcaaagtggcagt

Function

symbol description
pdk1 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK1 (pyruvate dehydrogenase kinase 1).

NR:

description
pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrial

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K12077 PDK1; pyruvate dehydrogenase kinase isoform 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819088.1 True 2493 mRNA 0.48 11 17424921 17430893
XM_039819089.1 False 2383 mRNA 0.47 10 17424921 17430894

Neighbor

gene id symbol gene type direction distance location
itga6a itga6 coding upstream 3567 17402757 ~ 17421354 (+)
dlx1a dlx1 coding upstream 44870 17377198 ~ 17380051 (+)
hat1 hat1,LOC102775709 coding upstream 74165 17331209 ~ 17350756 (+)
dync1i2a dync1i2,LOC103355058,LOC103392097 coding upstream 119828 17288114 ~ 17305093 (+)
LOC120569990 LOC102776861,LOC103355056,LOC100702543,LOC105924328,LOC102297804 coding upstream 137121 17285418 ~ 17287800 (+)
rapgef4a rapgef4,LOC101483582 coding downstream 34334 17465228 ~ 17498084 (+)
zak LOC104965553 coding downstream 70801 17501695 ~ 17526704 (+)
cdca7a cdca7 coding downstream 97056 17527950 ~ 17532256 (+)
sp9 sp9 coding downstream 201834 17632728 ~ 17634939 (+)
scrn3 scrn3,LOC102796247 coding downstream 212444 17643338 ~ 17648252 (+)
G124631 NA non-coding upstream 162095 17261737 ~ 17262826 (+)
G124627 tlk1,LOC102777640 non-coding upstream 167419 17256842 ~ 17257502 (+)
LOC120570569 NA non-coding upstream 413009 17010145 ~ 17011912 (+)
LOC120570570 NA non-coding upstream 416413 17006585 ~ 17008508 (+)
G124524 lrp2 non-coding upstream 467007 16956725 ~ 16957914 (+)
G124661 NA non-coding downstream 6467 17437361 ~ 17437819 (+)
G124671 NA non-coding downstream 38854 17469748 ~ 17498759 (+)
LOC120569550 NA non-coding downstream 174251 17605145 ~ 17614067 (+)
G124794 chrna1 non-coding downstream 233778 17664672 ~ 17666075 (+)
G124797 chn1,LOC102233772 non-coding downstream 241361 17672255 ~ 17674455 (+)
myo3b myo3b other upstream 226331 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 401361 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1323279 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 1447047 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1763907 15618514 ~ 15661014 (+)
hoxd10a hoxd10,LOC102792757 other downstream 429266 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 579863 18010757 ~ 18017413 (+)
G125079 NA other downstream 1272134 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 1387859 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1658524 19089418 ~ 19090785 (+)

Expression


Co-expression Network