chaf1b (chaf1b)


Basic Information

Item Value
gene id chaf1b
gene name chaf1b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19624352 ~ 19636001 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819090.1
GCAGCCTACTCGACCGGAAGTTTTGAAGAATCGTACGCGGGAAATTACTAATCGCTTCAGCTGGGCAACAGAGGAGGTCTGTTTTGgatataaaaaaagatgaagGTGGTAACGTGTGAGATTGCATGGCACAACAAGGAGCCAGTCTACAGTCTGGACTTCCAGCACAGTTCAGATGGACGCATTCATCGGCTGGCCACAGCTGGAGTGGACACCACAGTCAGATTGTGGCGGGTAGACACGGGCCCCGACGGGAAAGCAGTGGTGGATTTTTTGTCTAATCTGGCTAGACATACCAAGGCTGTCAACGTAGTGCGCTTTAGTCCCAATGGAGAGCTGCTTGCCTCAGGAGGAGATGATGCAGCAATTCTGCTGTGGAAGCTCAATGACTCTAAGGAGCCTGAGCAGGCACCCATGTtccaggaggaggaagatgctCAGCTCAACAAGGAGAGCTGGTCTGTGGTCAAGACATTGAGGGGGCACATAGAGGACGTGTATGACATCTGCTGGACACGGGATGGAAACTTCATGGTATCTGGGTCTGTCGACAACACTGCTATTATGTGGGACATCAACAAAGGACAGAAGCTGTGTATCTTGAATGACCATAAGAGCTACGTGCAGGGGGTGACCTGGGATCCTCAAGGGCAATATGTCGCCACTCTCAGCTGTGACAGAGTGATGCGTGTGTACAGCACTCACACCAAGAAGAAAGCCTTCTGTATCAGTAAAATGAGCTCTGGGCCACTTGCAGAGGGAGAGGTCAAGCAGTACAGAATGTTCCACGATGACAGCATGAGGTCCTTTTTCCGACGTCTCTCATTCACACCAGATGGGTCTTTCTTGCTCGCCCCAGCTGGATGTGTGGAGATCGGAGAAAACGTCATAAATACCACATACGTCTTTTCCAGGAAGGGCCTCAAGAGGCCCATCGCCCACTTGCCGTGTCCAACTAAAGCTACGCTGGCTGTGCGCTGCTGCCCCGTCTACTTTGAACTGAGGACCAAGAAGGCTGAAGATGGTTCGAGTCAGGCTCTTCCCAACGTATTCCAGTTGCCGTACCGCATGGTGTTTGCTGTGGCATCGGAGGACTCCATCTTTTTATATGACACGCAGCAGACCCTTCCTTTCGGCCTGGTGTCCAACATCCACTACCACACACTCAGCGATCTTACATGGTCTCGTGACGGTTCCTTCCTGGCTGTGTCCTCCACAGACGGCTACTGCTCCTTCCTGACCTTCTCTCCAGGGGAGCTGGGCACTCCGCTGAAGGAGCCCCCAACTCTGGAGGTCTTTGTCCCAAGCAGTGGGGTTGAGAAAAAGGGCAAGAAGTCGTCAGCGGCCAGGACCTCATCTCCTTTGACCCAGACACCAAGCTCAGCCCTGACTCCCACATCCCAAACCAGCCTTGGTAAAGATGCCCCCTCTGTCACCCCcccagaagagaagaagagcacCCCGAGTGTTAAGTCTAAACCCCAGCCCCGGAGGATCACCCTCAACACCCTGGAGGGTTGGGGGAAACCCTCTAATCCTAAAACCGCAGCACCTCAGACCCCAACATCTGCAAGCACAAGCACACCCTCTACTCCCCAACCCCGTATTACCCCTCTCACCCCAACCAACTCCTCCACAACCCAGCTACGCATCGCCCCTCTAACCCCCTCCACTCCTAAAGCCCCCAACAGTGCTGATGCTGGGCCCACTACTCCTAAGGGAACAACCACCCCAAAGGGGCCCGCCCCAAGGAGAGTATCTCTGACTCCCGTTGCATCCCGATCTCCAGCTGTTGGTTCACTCTTCCGCACCCCCTCTTCCACTGAGAAGGCCAAACATGAACGTCCTTCTCCTCCCACTGATCCAGTGTGCCAGCCGCCAGAGTCCAAGCGGCCAAAGACCACTGGCACCCAGACTTAGTGTCTACTGGGACCAGTGTGCTGCTACGATATCGGAAAAGAGTACATACAGCAGAAGGTGACGAAGAAGCTTCAGTACAAAACCACTGAGGCTCCCCATGGATGGAACACCATAGGGCAGTAGAATTGTGTGTGGGTTGATATTGTCCATACTTGAGTTAACTGGatgaagtttgatgaatatttgATTTGTTTGACATTTAGATGCTCAAGTACTGTTGTACAAAAGGAAAGTTCTGTCTCACTTCTTTCCAAAGACAGAAAACCACTCCAAACCTGAAGAAGAAAGTGGGGGGGAAAAGCACCTCAAGGTTTAGTGCCTTGTATATAGCTTTGAATATACAACCTCTTAATTTGCTGAAGACTGCGGGTCAGCAGCTTGAGTGAAAAGCTCCAAATTGTCAAGTCTTTTTTTCATTGTCTAATAAAGGACGTTTCATATACAGCGCA
>XM_039819091.1
TGTAGTGAACATGATCTTATCTAACAGGAATTTATGTACACATGTACCTGGTTTTGTCATTTGTCTGTAACGTTAGCAAGTCAACTCGACAAATCCGCTGCATTTATTGCTAACgctattagctagctaactttgtTGTAGCTTTCATTTCCAGTGACTGTGTGGCCAAGTTAGCCACtttatcaatatatatattcttatgTAACACGTAACACAGGCCCCATATTGCCCACCATGTGGAGATAAGTCTGTTTTGgatataaaaaaagatgaagGTGGTAACGTGTGAGATTGCATGGCACAACAAGGAGCCAGTCTACAGTCTGGACTTCCAGCACAGTTCAGATGGACGCATTCATCGGCTGGCCACAGCTGGAGTGGACACCACAGTCAGATTGTGGCGGGTAGACACGGGCCCCGACGGGAAAGCAGTGGTGGATTTTTTGTCTAATCTGGCTAGACATACCAAGGCTGTCAACGTAGTGCGCTTTAGTCCCAATGGAGAGCTGCTTGCCTCAGGAGGAGATGATGCAGCAATTCTGCTGTGGAAGCTCAATGACTCTAAGGAGCCTGAGCAGGCACCCATGTtccaggaggaggaagatgctCAGCTCAACAAGGAGAGCTGGTCTGTGGTCAAGACATTGAGGGGGCACATAGAGGACGTGTATGACATCTGCTGGACACGGGATGGAAACTTCATGGTATCTGGGTCTGTCGACAACACTGCTATTATGTGGGACATCAACAAAGGACAGAAGCTGTGTATCTTGAATGACCATAAGAGCTACGTGCAGGGGGTGACCTGGGATCCTCAAGGGCAATATGTCGCCACTCTCAGCTGTGACAGAGTGATGCGTGTGTACAGCACTCACACCAAGAAGAAAGCCTTCTGTATCAGTAAAATGAGCTCTGGGCCACTTGCAGAGGGAGAGGTCAAGCAGTACAGAATGTTCCACGATGACAGCATGAGGTCCTTTTTCCGACGTCTCTCATTCACACCAGATGGGTCTTTCTTGCTCGCCCCAGCTGGATGTGTGGAGATCGGAGAAAACGTCATAAATACCACATACGTCTTTTCCAGGAAGGGCCTCAAGAGGCCCATCGCCCACTTGCCGTGTCCAACTAAAGCTACGCTGGCTGTGCGCTGCTGCCCCGTCTACTTTGAACTGAGGACCAAGAAGGCTGAAGATGGTTCGAGTCAGGCTCTTCCCAACGTATTCCAGTTGCCGTACCGCATGGTGTTTGCTGTGGCATCGGAGGACTCCATCTTTTTATATGACACGCAGCAGACCCTTCCTTTCGGCCTGGTGTCCAACATCCACTACCACACACTCAGCGATCTTACATGGTCTCGTGACGGTTCCTTCCTGGCTGTGTCCTCCACAGACGGCTACTGCTCCTTCCTGACCTTCTCTCCAGGGGAGCTGGGCACTCCGCTGAAGGAGCCCCCAACTCTGGAGGTCTTTGTCCCAAGCAGTGGGGTTGAGAAAAAGGGCAAGAAGTCGTCAGCGGCCAGGACCTCATCTCCTTTGACCCAGACACCAAGCTCAGCCCTGACTCCCACATCCCAAACCAGCCTTGGTAAAGATGCCCCCTCTGTCACCCCcccagaagagaagaagagcacCCCGAGTGTTAAGTCTAAACCCCAGCCCCGGAGGATCACCCTCAACACCCTGGAGGGTTGGGGGAAACCCTCTAATCCTAAAACCGCAGCACCTCAGACCCCAACATCTGCAAGCACAAGCACACCCTCTACTCCCCAACCCCGTATTACCCCTCTCACCCCAACCAACTCCTCCACAACCCAGCTACGCATCGCCCCTCTAACCCCCTCCACTCCTAAAGCCCCCAACAGTGCTGATGCTGGGCCCACTACTCCTAAGGGAACAACCACCCCAAAGGGGCCCGCCCCAAGGAGAGTATCTCTGACTCCCGTTGCATCCCGATCTCCAGCTGTTGGTTCACTCTTCCGCACCCCCTCTTCCACTGAGAAGGCCAAACATGAACGTCCTTCTCCTCCCACTGATCCAGTGTGCCAGCCGCCAGAGTCCAAGCGGCCAAAGACCACTGGCACCCAGACTTAGTGTCTACTGGGACCAGTGTGCTGCTACGATATCGGAAAAGAGTACATACAGCAGAAGGTGACGAAGAAGCTTCAGTACAAAACCACTGAGGCTCCCCATGGATGGAACACCATAGGGCAGTAGAATTGTGTGTGGGTTGATATTGTCCATACTTGAGTTAACTGGatgaagtttgatgaatatttgATTTGTTTGACATTTAGATGCTCAAGTACTGTTGTACAAAAGGAAAGTTCTGTCTCACTTCTTTCCAAAGACAGAAAACCACTCCAAACCTGAAGAAGAAAGTGGGGGGGAAAAGCACCTCAAGGTTTAGTGCCTTGTATATAGCTTTGAATATACAACCTCTTAATTTGCTGAAGACTGCGGGTCAGCAGCTTGAGTGAAAAGCTCCAAATTGTCAAGTCTTTTTTTCATTGTCTAATAAAGGACGTTTCATATACAGCGCA

Function

symbol description
chaf1b Acts upstream of or within embryonic organ development; mitotic cell cycle; and retina development in camera-type eye. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in head; immature eye; optic tectum; pectoral fin; and trunk. Orthologous to human CHAF1B (chromatin assembly factor 1 subunit B).

NR:

description
PREDICTED: chromatin assembly factor 1 subunit B isoform X1

GO: NA

KEGG:

id description
K10751 CHAF1B; chromatin assembly factor 1 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819090.1 False 2369 mRNA 0.52 14 19624352 19636001
XM_039819091.1 True 2539 mRNA 0.50 14 19624494 19636001

Neighbor

gene id symbol gene type direction distance location
morc3a NA coding upstream 2274 19610107 ~ 19622078 (+)
dop1b dopey2 coding upstream 19056 19584119 ~ 19605296 (+)
LOC120570493 LOC103352916,LOC101468313,LOC102795746,LOC102303625,LOC100708288 coding upstream 74699 19524750 ~ 19549653 (+)
LOC120570242 LOC104953981 coding upstream 103180 19517979 ~ 19521172 (+)
LOC120569695 NA coding upstream 258928 19357001 ~ 19365424 (+)
si:dkey-229b18.3 NA coding downstream 1885 19637886 ~ 19645910 (+)
bcl9 bcl9 coding downstream 25726 19661727 ~ 19693298 (+)
LOC120569808 gja8,LOC102792462 coding downstream 96902 19732903 ~ 19736945 (+)
LOC120569809 NA coding downstream 105634 19741635 ~ 19744772 (+)
LOC120570226 fstl1 coding downstream 166233 19802234 ~ 19823687 (+)
G125267 NA non-coding upstream 37697 19491538 ~ 19586655 (+)
G125274 NA non-coding upstream 72411 19551358 ~ 19551941 (+)
G125266 NA non-coding upstream 155562 19467432 ~ 19468790 (+)
G125115 NA non-coding upstream 769322 18852566 ~ 18855030 (+)
G125114 slitrk5,LOC100690770 non-coding upstream 772557 18845407 ~ 18851795 (+)
G125369 NA non-coding downstream 112065 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding downstream 156008 19792009 ~ 19801958 (+)
G125397 NA non-coding downstream 263233 19899234 ~ 19899437 (+)
G125465 NA non-coding downstream 271586 19907587 ~ 19907822 (+)
G125480 NA non-coding downstream 294931 19930932 ~ 19937248 (+)
igsf3 LOC103352919,LOC104967650 other upstream 165078 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 533567 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 796805 18818753 ~ 18827547 (+)
G125079 NA other upstream 919824 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 1606939 18010757 ~ 18017413 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 332359 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 517854 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 856177 20492178 ~ 20521274 (+)
mpc2b mpc2 other downstream 1217088 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 1224151 20860152 ~ 20865442 (+)

Expression


Co-expression Network