slitrk5b (slitrk5,LOC100690770)


Basic Information

Item Value
gene id slitrk5b
gene name slitrk5,LOC100690770
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18849289 ~ 18852790 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819129.1
agagcgcgaaTAAGCAACTTTAGTTACCAGGCATAGCTGTGTCTCCTCCGGCACAGCGTGGTAAAAGAGAAGCATTTGGCAGTTATGGTTGATCAGCGTTTCTTTCATCCTCTCCGGTGCATTAGAGACGACGTACACACTGAATAGATCCTGTTTCCTCCTTCGTTTTGAcggattaaaaataaaagatgcGCTGAAATACCCAACGAGGCTACATCTTCATCATTGTGCATGAGATGGCATTGAGGAAACCTTAGCAGGACTGTGAGCTCGGCCATCATTTTTGCAGGAAAATGCATCTTTGGATTTCATATTTTTTGCTAAGTGCAACGTCAGTGTGCACTGTTGAGATGTTTGGCACTTATGGAGAAATATGTCAAAGACTTTGTGCctgtgaggagagagaggggattcTCACAGTGAGCTGTGAAAACAGAGGAGTTGTAAGTATCTCAGACATAAGCCCAGTGTACTTCTCCCAGTATCATCTGCTGCTTACAGGGAATCTATTGAAAAAGCTATCTGCCAATGATTTTGTTGAGTACAAGGGACTTACAATATTACATCTGGGAAATAATGAGATATCTGAAGTCGAAGCAGGAGCTTTTAATGGACTTCAGGAATTAAAACGATTGCATCTCAACAATAACAAAATTGATGCCTTGAAGGAAGAGATTTTCTTTGGCCTTGAAAGTCTGGAATATCTACAAATTGATTACAATTATATCACTCATGTTGCGCCGAATGCCTTGAGCAGACTTCGACATCTGGAGGTCCTGATTCTAAATGACAACTTAATATCTTCTCTGCCTGTGAACATTTTCCAGTATGTACCATTAACTCATTTGGACTTAAGGGGGAATCAGCTCAAAGTGCTACCCTACTCAGGTCTGCTGGAGCACATGAACAGTGTTGTGGAGTTACAGCTGGAGGAGAACCCATGGAACTGTTCATGTGAGCTGATCGCTCTTAAAACCTGGCTCGAGAGCATATCATACACAGCTTTAGTCGGCGATGTTGTTTGTGAGTTCCCTTTCCGGCTTCACGGGAGAGATCTTGATGAGGTTTCAAAACAGGAGTTGTGCCCGAGGAGAGCCATTGCTGAATACGAGATGCAACCCCTGCCACATTTGAGCACCGATGCATACTATAGGACTACGCCAGCTCATGTCACAGCCTCTTTCACCTCATCTGGGATTGCACGGTCCTCATCAAGACCCACTAAGGGACCCCACCAGTCACGCAAATTAAAATCAAGGCCCACTGCTCGCATCCCATCTAATAAACCACAGAATTATGGCCAGATTATTTCATATCAAACCAAATCCCCTGTGCCTTTAGATTGCCCAACTGCCTGCACCTGCAACCTTCAAATTTCAGACCTTGGCCTGAATGTGAACTGTCAGGAGCGAAAGATTGAGCATATCTCTGACTTACATCCCAAACCTTACAATCCCAAAAAGATGTATTTAACTGGGAATTATATCCCTGTGGTGCGTCGGTCAGATTTTATTGAGGCGACTGGATTAGATTTGCTTCATCTTGGTAACAATCGAGTTTCTCGCATACATGATCGAACATTTGGCGATTTGAAACACCTAAGAAGACTATACCTTAACGGAAATCTGATTGACCATCTTAAAGCTGAGATGTTTTATGGACTGGAGACCCTACAGTTCTTATATTTAGAATACAACGTCATTAAAGAAATTGCTTCTGACACCTTTCAGCATGTACCCAAACTTCAGCTTCTTTTCCTGAACAATAATCTCTTGAAAACCTTACCAGTGGGAACATTTAATGGCCTGACATTAGCCAGACTAAATCTTCGCAGCAACCATCTGCGATATCTGCCTGTCAGCGGCGTGCTAGATCAGCTCACGGCACTGGTGCAAGTTGATTTGTTCGAGAACCCCTGGGATTGCTATTGTAGCATACTGGAGTTGAAGATGTGGCTGGAGCAGCTTAGCACAGGCACGGTTGTAAACAATGTCATCTGTGGTTCGCCTAAAAGGCTAGCTGGGGAGGATATGAGATACATTAAGACAGCTAATTTCTGCCCTAATAACTCTGATATACTTGCCTCCATGATCCCACCCTCTGAAGAATCTTTTCCAGGCAGCACTATCACCATAGAAACATCTTTGGACTTTGACACACAATACAGTGCCATTCCTTTGTCTGTGATGATTCTTGCCCTTCTCTTCATGTtcattgtgtctgtgtttgtggcTGCAGGATTGTTCGTGGTAATGAAAAAGAGACATCAAAAGAGTCAAAACGAGCACAATAACTCCATGAATGCTTGCATTAGCTCTCTCAACATGGAATATGGCCTTTACAAAAAGGGATCCATTCCCAAAGTCAGAACATCTGCTGGACATGTATATGAGTACATACCACCTCCCACAGAGTCCACATGCAGAATTTCTGCCCAAACACCGACGGACAGCAAATCAACGGATGGATTTAGAGACTTTGACAAGTTGAGCGGCGCTTTTCTGGGTAACTCGGACGAAGAGGCAGCCAGTAATGTAATAAGCTCGGAATATAGTGCCACCACCCCAGAGCCACCTAGCAAGCCCTCCAGCTCTTACCAAGATGATCAGTGTTACTACAGAGATGTACATGAGCCTGACAAGCACACACGCTACAGCAATACATTACCATGCAGGCATGCGGCGCATTCGTCAAGTCAGTATACCTCAGACTTGGATGCAAGGCATCAATACATGCACCCAGATAGGATACAACAGACAATACTCTATTGTGCACCAAGTACTGTATATGTGGAGCCCAACAGGAGTGAGTACTGGGAACTGAAAGCAAAGCTTCATATTGATCCCGATTACCTTGAGGTTCTTGAAAAACGAACAACATTTACACAGTTTTAGGAGACTTGATATGTGGACGGTCAGCGTGGATGCATTGATGTAATGTATCCTTTTTTTTATCAGGAATCCGACCATGTTTAAAAAACAGGCAGAACTACTTTATCACCTTTATTTGTACAATACATTGTGAGCATTTCTGGGAATCTTCTGTCACATGATGGAATAATAAAACTACTAATTTTAAAGTA

Function

symbol description
slitrk5 Predicted to be involved in axonogenesis. Predicted to act upstream of or within several processes, including grooming behavior; nervous system development; and positive regulation of synapse assembly. Part of receptor complex.

NR:

description
SLIT and NTRK-like protein 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819129.1 True 3082 mRNA 0.43 2 18849289 18852790

Neighbor

gene id symbol gene type direction distance location
gpc6b gpc6,LOC104947503 coding downstream 59995 18704688 ~ 18789294 (-)
LOC120570238 cldn10,LOC103391834,LOC104947506 coding downstream 240475 18606426 ~ 18608814 (-)
LOC120570204 NA coding downstream 244118 18603123 ~ 18605171 (-)
LOC120569518 LOC101478235,LOC102203487,LOC102783581,LOC104922687,LOC104947508 coding downstream 247907 18599472 ~ 18601382 (-)
dnajc3a dnajc3 coding downstream 250834 18581236 ~ 18598455 (-)
LOC120569248 LOC102780588,LOC100690496,LOC101481378,LOC102206814,LOC103352953 coding upstream 20273 18873063 ~ 18885787 (-)
pcdh8 LOC104947529,LOC103352945 coding upstream 45886 18898676 ~ 18903097 (-)
ednrbb LOC103352943,LOC104947527 coding upstream 90561 18943351 ~ 18947075 (-)
cog3 cog3,LOC102779731 coding upstream 109499 18962289 ~ 18975007 (-)
mid1 LOC103352941,LOC100711508,LOC102207649,LOC102290384 coding upstream 124422 18977212 ~ 19004027 (-)
G125116 NA non-coding downstream 1920 18845832 ~ 18847369 (-)
G125113 NA non-coding downstream 3994 18844546 ~ 18845295 (-)
G125112 NA non-coding downstream 4951 18844100 ~ 18844338 (-)
G125108 NA non-coding downstream 20787 18827542 ~ 18828502 (-)
LOC120570508 NA non-coding downstream 29968 18815846 ~ 18819321 (-)
G125173 frmpd4,LOC100710969,LOC102314130 non-coding upstream 220445 19073235 ~ 19076766 (-)
G125178 NA non-coding upstream 236712 19089502 ~ 19090779 (-)
LOC120569517 NA non-coding upstream 255510 19108300 ~ 19113781 (-)
G125227 NA non-coding upstream 348956 19201746 ~ 19205941 (-)
G125293 LOC103392014,LOC104967650 non-coding upstream 579274 19432064 ~ 19432431 (-)
G125090 NA other downstream 144612 18700887 ~ 18704677 (-)
G125089 dct,LOC102781940 other downstream 149487 18695480 ~ 18699802 (-)
prkra prkra other downstream 685540 18156732 ~ 18163749 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 734192 18113110 ~ 18115097 (-)
fastkd1 fastkd1,LOC102780871 other downstream 1806917 17035373 ~ 17042372 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 379197 19231987 ~ 19258846 (-)
G125326 dopey2 other upstream 743139 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 898911 19751701 ~ 19768586 (-)
LOC120570223 NA other upstream 937262 19790052 ~ 19796220 (-)
si:ch211-214p13.7 NA other upstream 1068478 19921268 ~ 19923735 (-)

Expression


Co-expression Network