shox (shox,mog-12)


Basic Information

Item Value
gene id shox
gene name shox,mog-12
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23817012 ~ 23825813 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819154.1
ACAGCAGGAGTGATCTCACCTCCTCTCCACCCCTTCTATCTATCGCTGCTGCCAGCCTCCAAAAAAGAGCGTATCCGTGAGCAGTGCTGGTGCTACATAGACACGCTAAGGTAGCCTATAGACTACACTGAGAATTCACGGTGGATTTCCCTGACCAGGACCACTACTGAGCCACAGAGCCGACCATGGAAGAACTTACGGCATTTGTGTCGAAATCTTTCGATCAGAAAACCAAGGAGAGCAGCAAAGAGAGTATCACGTACAGGGAAGTTTTGGAGAGCGGCTTGACGCGGGCGAGGGAGCTGGGCAGCCCGGAGACAAACCTGCAGGACATAACGGAGGGCAGCCACTGCCCGGTGCATCTGTTCAAGGACCACGTCGAGCTGGAAAAGGAGAAACTGAAGGACTTTAGTGTTTCGAGGTCGACTGAGGGGATATACGAGTGTAAGGAGAAAAAGGAGGACGTGAAGTCGGAGGACGAGGATGCACAGGGCAAACTGAAGCAGCGGAGGAGTCGCACTAACTTCACGTTGGAGCAACTCAACGAGCTGGAGCGGCTCTTCGACGAGACGCACTACCCGGACGCGTTCATGAGAGAGGAGCTGAGCCAGCGGCTGGGACTGTCCGAGGCCAGGGTGCAGGTCTGGTTTCAGAACAGAAGAGCCAAATGTCGAAAACAAGAAAACCAGATGCACAAAGACATCTTTCCCTTCTCTCCAGGTGTTATTCTGGGCAGCGGCAGTCACCTCGACGCATGCAGAGTAGCACCCTATGTCAATATGGGTGCCCTCCGGATGCCCTTCCAACAGGTCCAAGCCCAGCTTCAGTTGGACGGAGTCGCCCACTCCCACCCACACCTGCACCCTCACCTGGCTGCTCACGCTCCCTACCTGATGTTCCCACCTCCTCCGTTTGGACTACCAATCGCATCGCTCGCCGACTCGGCCTCTGCAGCAGCGGCGGTGGCAGCAGCTGCCAAAAGCAACAGCAAGAACTCGAGCATCGCCGACCTGCGACTCAAGGCAGGACTTCTGCGGGGCCAGTGGCTCAGTCCACTCCAGGCACAGATCACATCCCAAGGACCGTACAAACACATGTGGATGTCTGTCTGAGGGCCAGGCCGGGGCCCGTCAGACCAGAAGACGTTAGAACAAAGCAAACTGGCAGGCAGCAGCAGGGCCAAAAGCAGAGCCTCGCTGACGCTGGCTGACGCCATATTGACAATGCAGAGGGTTGAGCATGGGGGAAACAGACCCAAGCACCACCTCAACGAAGCATTGGAACGGCTCTCCCCTTTATACCCTCCCCCACCCCATCTTCACtagaaaaatgaa
>XM_039819156.1
ACAGCAGGAGTGATCTCACCTCCTCTCCACCCCTTCTATCTATCGCTGCTGCCAGCCTCCAAAAAAGAGCGTATCCGTGAGCAGTGCTGGTGCTACATAGACACGCTAAGGTAGCCTATAGACTACACTGAGAATTCACGGTGGATTTCCCTGACCAGGACCACTACTGAGCCACAGAGCCGACCATGGAAGAACTTACGGCATTTGTGTCGAAATCTTTCGATCAGAAAACCAAGGAGAGCAGCAAAGAGAGTATCACGTACAGGGAAGTTTTGGAGAGCGGCTTGACGCGGGCGAGGGAGCTGGGCAGCCCGGAGACAAACCTGCAGGACATAACGGAGGGCAGCCACTGCCCGGTGCATCTGTTCAAGGACCACGTCGAGCTGGAAAAGGAGAAACTGAAGGACTTTAGTGTTTCGAGGTCGACTGAGGGGATATACGAGTGTAAGGAGAAAAAGGAGGACGTGAAGTCGGAGGACGAGGATGCACAGGGCAAACTGAAGCAGCGGAGGAGTCGCACTAACTTCACGTTGGAGCAACTCAACGAGCTGGAGCGGCTCTTCGACGAGACGCACTACCCGGACGCGTTCATGAGAGAGGAGCTGAGCCAGCGGCTGGGACTGTCCGAGGCCAGGGTGCAGGTCTGGTTTCAGAACAGAAGAGCCAAATGTCGAAAACAAGAAAACCAGATGCACAAAGGTGTTATTCTGGGCAGCGGCAGTCACCTCGACGCATGCAGAGTAGCACCCTATGTCAATATGGGTGCCCTCCGGATGCCCTTCCAACAGGTCCAAGCCCAGCTTCAGTTGGACGGAGTCGCCCACTCCCACCCACACCTGCACCCTCACCTGGCTGCTCACGCTCCCTACCTGATGTTCCCACCTCCTCCGTTTGGACTACCAATCGCATCGCTCGCCGACTCGGCCTCTGCAGCAGCGGCGGTGGCAGCAGCTGCCAAAAGCAACAGCAAGAACTCGAGCATCGCCGACCTGCGACTCAAGGCAGGACTTCTGCGGGGCCAGTGGCTCAGTCCACTCCAGGCACAGATCACATCCCAAGGACCGTACAAACACATGTGGATGTCTGTCTGAGGGCCAGGCCGGGGCCCGTCAGACCAGAAGACGTTAGAACAAAGCAAACTGGCAGGCAGCAGCAGGGCCAAAAGCAGAGCCTCGCTGACGCTGGCTGACGCCATATTGACAATGCAGAGGGTTGAGCATGGGGGAAACAGACCCAAGCACCACCTCAACGAAGCATTGGAACGGCTCTCCCCTTTATACCCTCCCCCACCCCATCTTCACtagaaaaatgaa

Function

symbol description
shox Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Acts upstream of or within bone mineralization; cell population proliferation; and pectoral fin development. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; nervous system; pericardial region; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Leri-Weill dyschondrosteosis and SHOX-related short stature. Orthologous to human SHOX (short stature homeobox).

NR:

description
short stature homeobox protein-like isoform X3

GO: NA

KEGG:

id description
K09331 SHOX; short stature homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819154.1 True 1334 mRNA 0.56 6 23817012 23825813
XM_039819156.1 False 1313 mRNA 0.56 6 23817012 23825813

Neighbor

gene id symbol gene type direction distance location
fgf14 fgf14 coding downstream 167397 23538738 ~ 23649615 (-)
nalcn nalcn coding downstream 323674 23398523 ~ 23493338 (-)
tmtc4 tmtc4 coding downstream 445581 23360478 ~ 23371431 (-)
zic5 zic5,LOC102789084 coding downstream 577867 23235022 ~ 23239145 (-)
si:ch211-184m13.4 LOC104962230,LOC100690478,LOC103357536,LOC101477149 coding downstream 676329 23139020 ~ 23140683 (-)
si:ch211-269e2.1 LOC103357720 coding upstream 102720 23928533 ~ 23951691 (-)
med14 med14 coding upstream 132434 23958247 ~ 23973690 (-)
rpl8 rpl8,LOC106586796,LOC107595836 coding upstream 204628 24030441 ~ 24033769 (-)
cerkl cerkl coding upstream 263496 24089309 ~ 24125727 (-)
neurod1 neurod1 coding upstream 304205 24130018 ~ 24134141 (-)
G126535 NA non-coding downstream 103055 23713486 ~ 23713957 (-)
G126534 NA non-coding downstream 103742 23711987 ~ 23713270 (-)
G126533 NA non-coding downstream 106697 23709174 ~ 23710315 (-)
G126528 NA non-coding downstream 112992 23703270 ~ 23704020 (-)
G126526 NA non-coding downstream 116950 23699344 ~ 23700062 (-)
G126597 LOC101470276,LOC102292608,LOC102197480,LOC100692635,LOC103357839 non-coding upstream 127590 23953403 ~ 23954370 (-)
G126606 NA non-coding upstream 179246 24005059 ~ 24005660 (-)
G126673 NA non-coding upstream 352644 24178457 ~ 24180149 (-)
G126676 NA non-coding upstream 355158 24180971 ~ 24182844 (-)
G126686 NA non-coding upstream 372066 24197879 ~ 24198556 (-)
gpr18 gpr18 other downstream 693104 23110033 ~ 23123908 (-)
klf5b LOC104962226,LOC103357491 other downstream 849111 22962199 ~ 22967901 (-)
scel scel other downstream 1151540 22655579 ~ 22665472 (-)
katnal1 katnal1,LOC106527129,LOC104958633 other downstream 1187897 22615496 ~ 22629115 (-)
si:dkey-100n23.5 LOC103357194,LOC107389748,LOC106527133,LOC108232487,LOC102079199,LOC107091445,LOC103391942,LOC106962244,LOC103134722,LOC104958636 other downstream 1234605 22531634 ~ 22582407 (-)
si:ch211-218d20.15 LOC104960513,LOC101470276,LOC102197480,LOC102292608,LOC107099189,LOC100692635 other upstream 129033 23954846 ~ 23957206 (-)
cnga4 cnga4,LOC103356095 other upstream 845409 24671222 ~ 24679011 (-)
G127032 neb other upstream 1872915 25698728 ~ 25701551 (-)
G127046 neb,LOC100194727 other upstream 1899261 25725074 ~ 25740126 (-)
arhgap20 LOC103357161,LOC102081671,LOC104942835 other upstream 2375349 26201162 ~ 26259576 (-)

Expression


Co-expression Network