u2af1 (LOC103352857,LOC103391595)


Basic Information

Item Value
gene id u2af1
gene name LOC103352857,LOC103391595
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20630090 ~ 20636605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819157.1
AGACGGAAGACTTGTCGTTGTTGCTGCTGGTTGAGCACACAGGCGGGCCAAGATGGCGGAGTACCTGGCGTCCATTTTTGGGACAGAGAAAGATAAGGTCAActgctctttttattttaaaattggtGCCTGCCGACATGGCGACCGCTGCTCCAGATTACACAACAAGCCGACATTCAGCCAGACAATTGCCCTCCTGAACATTTACCGGAACCCTCAGAATAGTGCCCAGTCTGCTGATGGTCTCACCTGTGCCATCAGTGACATGGAGATGCAGGAGCACTATGATGAGTTTTTTGAGGAGGTCTTCACAGAGATGGAAGAAAAGTACGGAGAGGTGGAGGAGATGAACGTATGTGACAACCTTGGGGACCACTTAGTAGGGAATGTGTATGTGAAGTTCCGTTATGAAGAGGACGCGGAGAAGGCTGTGATAGACCTGAATAATCGGTGGTTTAATGGACAGCCCATCCATGCCGAGCTCTCTCCCGTCACAGACTTCAGAGAAGCCTGCTGTCGCCAGTATGAAATGGGCGAATGCACTCGTGGTGGTTTCTGCAACTTCATGCATCTGAAGCCCATCTCACGTGAACTGAGGAGAGAGCTCTATGGGCGTCGGAGGAAGGGCCGCCATAGGTCCCGGTCTCGCTCGAGAGAGAGGCGATCTCGCTCGAGGGACAGAggtcgaggaggaggaggtggtggcggtggaggaggaggaggaggaggaggaggaggaggtggccgTGACCACGAGAGACGTCGctccagagacagagagcgttcAGGACGATTCTGAACCACAAGCCATGACTACTTGTCCTTCCCTCCCTGTATCCATCCccagtcttctttttttttaaggttgtaccCTTTCAGATCTATTCTAGGACTAAATGAAAGGTACCTGATTTTTGAAGCTGTGACAGCATTGATGAAcctgtttttttcttgattTCTGAAAATGACTTTCACCTCATTAAATTACCATTTTTACTTAA

Function

NR:

description
PREDICTED: splicing factor U2AF 35 kDa subunit

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12836 U2AF1; splicing factor U2AF 35 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819157.1 True 1001 mRNA 0.50 8 20630090 20636605

Neighbor

gene id symbol gene type direction distance location
cbsb NA coding downstream 18429 20589788 ~ 20611661 (-)
ankrd10b ankrd10,LOC102292027 coding downstream 114887 20499453 ~ 20515203 (-)
ube2al ube2al,ube2a,LOC105934920,LOC104955100,LOC103021436,LOC103029486,LOC108259060,LOC107552373 coding downstream 131219 20492166 ~ 20498871 (-)
rab20 rab20 coding downstream 153741 20471607 ~ 20476349 (-)
col4a1 col4a1 coding downstream 240688 20341286 ~ 20389402 (-)
LOC120569729 LOC103352860,LOC100709268 coding upstream 12663 20649268 ~ 20664884 (-)
LOC120569295 grpr,LOC103352898,LOC100697445,LOC101071331,LOC101471274,LOC102795360 coding upstream 78981 20715586 ~ 20719763 (-)
srpx srpx,LOC102777533 coding upstream 138473 20775078 ~ 20792247 (-)
rpgra NA coding upstream 159112 20795717 ~ 20809233 (-)
dcaf6 NA coding upstream 188169 20824774 ~ 20850992 (-)
G125658 NA non-coding downstream 45158 20584648 ~ 20584932 (-)
G125605 NA non-coding downstream 299375 20330508 ~ 20330715 (-)
G125551 NA non-coding downstream 398030 20230085 ~ 20232060 (-)
G125543 NA non-coding downstream 480911 20147416 ~ 20149179 (-)
G125539 NA non-coding downstream 485341 20143583 ~ 20144749 (-)
G125694 NA non-coding upstream 30441 20667046 ~ 20667405 (-)
G125701 NA non-coding upstream 47290 20683895 ~ 20684410 (-)
G125703 NA non-coding upstream 50091 20686696 ~ 20686913 (-)
G125708 NA non-coding upstream 55292 20691897 ~ 20697240 (-)
G125720 NA non-coding upstream 74260 20710865 ~ 20713149 (-)
G125620 col4a2 other downstream 162905 20464109 ~ 20467185 (-)
G125619 col4a2 other downstream 168461 20459162 ~ 20461629 (-)
si:ch211-214p13.7 NA other downstream 706355 19921268 ~ 19923735 (-)
LOC120570223 NA other downstream 833870 19790052 ~ 19796220 (-)
si:ch211-214p13.3 NA other downstream 861504 19751701 ~ 19768586 (-)
LOC120570047 dynlt3 other upstream 97945 20734550 ~ 20738320 (-)
G125842 NA other upstream 317056 20953661 ~ 20960064 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other upstream 342396 20979001 ~ 20986633 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other upstream 474582 21111187 ~ 21149005 (-)
ecrg4a Augurin-B,LOC103352889 other upstream 556303 21192908 ~ 21198088 (-)

Expression


Co-expression Network