LOC120569337


Basic Information

Item Value
gene id LOC120569337
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15888137 ~ 15891006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640866.1
ACAGCCAGGCCCTGGCCTCTGACCAGGGGCCATCCACATCAACACTGCTTACACTCCACCATACCTCCCAGCTACTGGCCCAGCCAACCAGCTCTATACACACACTGAGGCAGACAGGGAGAGGAACAAGGCTGGAGAAATGAAGACTGCGAAaatgtgagcgtgtgtgtgtgcgtgtgcatgcatgtgtgcgtgcgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcatgcgtgcgtgtgtgtgtgtgtgtataggtgggCGGATGCCGATGAGGGCAAGGAGCAAcgaagaggagaaagaaataaagatagAAATGGAGTCAGAGAATTCAGCCCCATGAAAGAAGACAGAAGAATAAAAGACAGGCTAAGGAGAAGACAAGGCCTCAGCTGTGCGCCGCACTGATCTACACACTGTGATTACCTGGAGCAGAAAACCGAATGTAAAGGCCTTGGGCTGGCTTTGATATTTCCATCGTTTGTTTGTCTGCTATGACCTGGACTACATTTAACAGACCTAGACTGGAGGTCAGTAGGAATCAAGGGATGGCCAAGCACATACAGggttttcctctccttctctatTAAACTCTCACCAACACTCATTATAGTTACCTTTTGTCTAGTATTTGTTGCCATTACATAGTCTAGGCACAACTAGAGACCACTCAATAATCAAGGTGTTGTTGGATAATGGCAGAAACAAATGAGAAGTATTAAGTTGAGTATATGTCTGGTAATACAGAATAAGGATGTCTTTTGTCTTGGCTGGCATTCTTTTCTAAGACAGTGACTTGCAGATGGGGGTGGTAGCTGAAAGGTGTCCTCCAATTATCAAGGTATTACACTGCTAAAACTATAAGCATGCACTATGGGAGCCTAAGAGGAGACAACGCTTCATTAGAGACAAGaatagagttttttttattattattattgttattattattattattattattattattattattattattattattattattattattattattaaggtaTTGAGTaactatttctttaaagttttaaacttTCCAGCACAACCTGCTCTGATTACCCTGGGTTTACCAATATAACTAAGTGGTTTATATGAAGGAGGCAGGATTGGTAATTACAAGCCAATAATCACCGTTTACTACCGAAGCTGCAGAGTAACACTGAATATAAAAGAAAATTGATTAATGCTTAATAAGGTGACCAAATGTGGAGCTTAGCTATGTACTATTCAATAAAGCAAAAAATGAGTGTCAGTATGGATGGCCCAATTGTTTCTCTGCAGTGCACCACTCTCCCAATCATGAAGAGATCACAGCTAAGTTGTGAAACATTATATCATGCATACCAAATATCAGTAGCACATTTTGATCACTGAAGTCAGCCACAACTGCCTGAAACTGTCTTCAACATGCTCCTGTGAAACAATCAGTTGATTAATTAGTTAGTCAATCGACAAAAAATAtgataataatcataatggaaaaagtcatttttcaagcaaaagtGTCTTCTCAATTGCCAagatatttttcttttccttaacttatGTGATGGTAAACTGAAAATCACCAAACCATCAATTAATATGAGTAATTTTTGGCGGCAGCCCTTCTTAGTTTATGGATATTTTTGTAGGAGATTTTCTATTGACAAAGGCAGGTCATGCTCTCCTGAGCCAGTGATCCTATCCAGTGATAGTATAAGAGTGCTATTACTATTATAAGAGAAGTATTTTTACACAGATTTTTTGATGGTTTTTGGTTCAGTCAGATGTCAAATCCAATGGTGCAAAATGTTGCTTTTGTCAGTGAATTTTCATACTTATATTGTATTAGTGGGTTTATAAAGTTAGCAAATAAGAACTAATCAGGTAgtattcttttaaaaataaaagtattttataGCAAAAACAGGCACACAGCAAAAATTCTGGTGTTGGTAATCATCTGTGCTTATATCACGACTAACTAACTGAACCAACTATAGATGACATGGCAGAAAATGCTGTTTGAAACATTGTTTACTATAGTCTACATCTAAATATTGTACAGAACTTGGAAGCTCTGTaaaacagtatttatttttgaatgtgtgtctgtataagTGCTTATAAGTATCCTTAATGTTATGTTGCTTTATCCCTCTAAgatgtgaaaatgaaataaaaactagTCACAAAAATGA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640866.1 True 2213 lncRNA 0.38 2 15888137 15891006

Neighbor

gene id symbol gene type direction distance location
kcnj3a kcnj3 coding upstream 191563 15668278 ~ 15696574 (+)
fmnl2a fmnl2,LOC102797926 coding upstream 322295 15515461 ~ 15565842 (+)
pttg1ipb LOC104944099,LOC103370189 coding upstream 382549 15502117 ~ 15505588 (+)
myo10l3 LOC103370188 coding upstream 387940 15443454 ~ 15500197 (+)
ankzf1 ankzf1 coding upstream 461459 15420802 ~ 15426678 (+)
LOC120570324 NA coding downstream 11681 15902687 ~ 15909852 (+)
upp2 upp2 coding downstream 87280 15978286 ~ 15980899 (+)
LOC120570318 NA coding downstream 122559 16013565 ~ 16096337 (+)
tanc1b tanc1,LOC101475961 coding downstream 214430 16105436 ~ 16207591 (+)
tank tank coding downstream 426368 16317374 ~ 16322778 (+)
LOC120570206 NA non-coding upstream 148179 15715606 ~ 15739958 (+)
G124150 NA non-coding upstream 320676 15536535 ~ 15567461 (+)
LOC120569294 NA non-coding upstream 471933 15415408 ~ 15416204 (+)
LOC120569306 NA non-coding upstream 638308 15243198 ~ 15249829 (+)
G123989 NA non-coding upstream 656454 15226085 ~ 15231683 (+)
G124229 NA non-coding downstream 21209 15912215 ~ 15912428 (+)
G124323 NA non-coding downstream 389593 16280599 ~ 16280878 (+)
G124325 cd302 non-coding downstream 389938 16280944 ~ 16285287 (+)
LOC120569637 NA non-coding downstream 413757 16304763 ~ 16310641 (+)
G124339 NA non-coding downstream 490241 16381247 ~ 16381693 (+)
galnt13 galnt13,LOC102796746 other upstream 227123 15618514 ~ 15661014 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other upstream 314289 15506984 ~ 15573848 (+)
trpm2 trpm2 other upstream 729200 15137587 ~ 15158937 (+)
si:dkeyp-118h9.7 LOC102200331 other upstream 894303 14976595 ~ 14993834 (+)
G123742 NA other upstream 1654067 14233332 ~ 14234070 (+)
LOC120570321 NA other downstream 79976 15970982 ~ 15977874 (+)
dap1b dapl1 other downstream 208265 16099271 ~ 16101642 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 1097065 16988071 ~ 17023560 (+)
myo3b myo3b other downstream 1236875 17127881 ~ 17198590 (+)
hoxd10a hoxd10,LOC102792757 other downstream 1969154 17860160 ~ 17881328 (+)

Expression


Co-expression Network