LOC120569506


Basic Information

Item Value
gene id LOC120569506
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17737284 ~ 17822487 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640876.1
CATGGCACGACTTTCTACGTAGCAAGTAGTGTTAACGCAACTTGTCATGTCATAAAACCAAACTAAGAAGAAAAAGATATCATTATTTTGTTTATCAAAGTAGAGGAGTTTGTTATATACGTTTATTAATGTCTTTAATTTAGCTAACTTCGGGTGAGGAGATAATGAGATTCCATTGGAGGAAAGCAACCGTGTTTTTAAATAAGCTTGCGAGaaattgctagctagctagctcaacAGGTGGAGCAGAGGCGCTGCAGTGCGTTTCACCTGGAAACAACTAAAATGGAGCAGCGGCCaggggaccaactccagttcTGAGGCCAGCACCTCCGTCTGTTGGAGAATGGCTTGTTCAAGGACATACCTTACGTTTCACCACTGAGGAAGGACAAGCTATATCAAGACAAATGAAACACCCCTCCTGCTTCCCCCCAAAAGAACCCCAACAAGGAGACTTCAGACTACCATATCAGGTTGGGCTGTCCGAGGATCGGCCTGTGGGATGGAGGTAAGCTTCTGggcttctgtctgtctgtctctgtctctcagatTCCTCTGGATCCACCCCCCTCCTGGATCCCAGATTCTCTCCATCATCTCCTCCAACCGTGAGGTCTAACCGTCAGGGCAGGGGCGTGTGGGCGGACATGCTGGGCGCTGGCAGCGGGCTCCGTCTGCTAGTGAGTAATCATGGTCCTGAGACAGCATGAGCAGCAGCTATTGCTGTAATTTAAAGTCAATATTGTACTCATGATCCCTCTCCCCGGGCTAACGGAACAGCCTCTCACCGCGATGGAGAAAGTCATCTCTGCTGCTTAGAGGGAATCCTCAGCTTCTCTTCTCTGATTCTCAAAAGAAGCCTGAATGAGATAAAGAATGCTCGGTGCATTTCTGTGGGATGATTTCCAGAGGTATCAGAGATCTGCCTGCCTACTCCTACTGCGGATTATTGGACTTGAAGGCTGTCTATACTCTCAACGAAACAGGCTCTCAGGTTCTCTGTATGACCCACACAgatgtaacccccccccccatcccccctgtaaattatgcCTATGTAAGGACCCCAGGTATCTGTACTCCTACAATGTCTTTCAAGGAGAGGATGGTTATGTGTTGGTTATGTGTTCACCATTCACAAAGCACAATGTAACTGGAACCACTGGAGATACAGAAAACATTGTTtattacaaattaaaacattcgCTATATTTCTGAAATTAGTGTAATCAGTGTGTATcatagatgtgt
>XR_005640877.1
CATGGCACGACTTTCTACGTAGCAAGTAGTGTTAACGCAACTTGTCATGTCATAAAACCAAACTAAGAAGAAAAAGATATCATTATTTTGTTTATCAAAGTAGAGGAGTTTGTTATATACGTTTATTAATGTCTTTAATTTAGCTAACTTCGGGTGAGGAGATAATGAGATTCCATTGGAGGAAAGCAACCGTGTTTTTAAATAAGCTTGCGAGaaattgctagctagctagctcaacAGGTGGAGCAGAGGCGCTGCAGTGCGTTTCACCTGGAAACAACTAAAATGTATAGGAGCAGCGGCCaggggaccaactccagttcTGAGGCCAGCACCTCCGTCTGTTGGAGAATGGCTTGTTCAAGGACATACCTTACGTTTCACCACTGAGGAAGGACAAGCTATATCAAGACAAATGAAACACCCCTCCTGCTTCCCCCCAAAAGAACCCCAACAAGGAGACTTCAGACTACCATATCAGGTTGGGCTGTCCGAGGATCGGCCTGTGGGATGGAGGTAAGCTTCTGggcttctgtctgtctgtctctgtctctcagatTCCTCTGGATCCACCCCCCTCCTGGATCCCAGATTCTCTCCATCATCTCCTCCAACCGTGAGGTCTAACCGTCAGGGCAGGGGCGTGTGGGCGGACATGCTGGGCGCTGGCAGCGGGCTCCGTCTGCTAGTGAGTAATCATGGTCCTGAGACAGCATGAGCAGCAGCTATTGCTGTAATTTAAAGTCAATATTGTACTCATGATCCCTCTCCCCGGGCTAACGGAACAGCCTCTCACCGCGATGGAGAAAGTCATCTCTGCTGCTTAGAGGGAATCCTCAGCTTCTCTTCTCTGATTCTCAAAAGAAGCCTGAATGAGATAAAGAATGCTCGGTGCATTTCTGTGGGATGATTTCCAGAGGTATCAGAGATCTGCCTGCCTACTCCTACTGCGGATTATTGGACTTGAAGGCTGTCTATACTCTCAACGAAACAGGCTCTCAGGTTCTCTGTATGACCCACACAgatgtaacccccccccccatcccccctgtaaattatgcCTATGTAAGGACCCCAGGTATCTGTACTCCTACAATGTCTTTCAAGGAGAGGATGGTTATGTGTTGGTTATGTGTTCACCATTCACAAAGCACAATGTAACTGGAACCACTGGAGATACAGAAAACATTGTTtattacaaattaaaacattcgCTATATTTCTGAAATTAGTGTAATCAGTGTGTATcatagatgtgt
>XR_005640878.1
CATGGCACGACTTTCTACGTAGCAAGTAGTGTTAACGCAACTTGTCATGTCATAAAACCAAACTAAGAAGAAAAAGATATCATTATTTTGTTTATCAAAGTAGAGGAGTTTGTTATATACGTTTATTAATGTCTTTAATTTAGCTAACTTCGGGTGAGGAGATAATGAGATTCCATTGGAGGAAAGCAACCGTGTTTTTAAATAAGCTTGCGAGaaattgctagctagctagctcaacAGGTGGAGCAGAGGCGCTGCAGTGCGTTTCACCTGGAAACAACTAAAATGGAGCAGCGGCCaggggaccaactccagttcTGAGGCCAGCACCTCCGTCTGTTGGAGAATGGCTTGTTCAAGGACATACCTTACGTTTCACCACTGAGGAAGGACAAGCTATATCAAGACAAATGAAACACCCCTCCTGCTTCCCCCCAAAAGAACCCCAACAAGGAGACTTCAGACTACCATATCAGGTTGGGCTGTCCGAGGATCGGCCTGTGGGATGGAGGTAAGCTTCTGggcttctgtctgtctgtctctgtctctcagatTCCTCTGGATCCACCCCCCTCCTGGATCCCAGATTCTCTCCATCATCTCCTCCAACCGTGAGGTCTAACCGTCAGGGCAGGGGCGTGTGGGCGGACATGCTGGGCGCTGGCAGCGGGCTCCGTCTGCTAGTGAGTAATAGATAAAGAATGCTCGGTGCATTTCTGTGGGATGATTTCCAGAGGTATCAGAGATCTGCCTGCCTACTCCTACTGCGGATTATTGGACTTGAAGGCTGTCTATACTCTCAACGAAACAGGCTCTCAGGTTCTCTGTATGACCCACACAgatgtaacccccccccccatcccccctgtaaattatgcCTATGTAAGGACCCCAGGTATCTGTACTCCTACAATGTCTTTCAAGGAGAGGATGGTTATGTGTTGGTTATGTGTTCACCATTCACAAAGCACAATGTAACTGGAACCACTGGAGATACAGAAAACATTGTTtattacaaattaaaacattcgCTATATTTCTGAAATTAGTGTAATCAGTGTGTATcatagatgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640876.1 False 1254 lncRNA 0.46 6 17737284 17822487
XR_005640877.1 True 1259 lncRNA 0.46 6 17737284 17822487
XR_005640878.1 False 1076 lncRNA 0.46 5 17737284 17822487

Neighbor

gene id symbol gene type direction distance location
atp5mc3a atp5g3 coding downstream 4692 17730065 ~ 17732592 (-)
atf2 NA coding downstream 7945 17712254 ~ 17729339 (-)
chn1 chn1 coding downstream 54440 17672214 ~ 17682844 (-)
LOC120569555 chrna1 coding downstream 68880 17660170 ~ 17668404 (-)
gpr155a gpr155 coding downstream 78880 17648143 ~ 17658404 (-)
lnpa lnpk,LOC102313025 coding upstream 4591 17827078 ~ 17836086 (-)
evx2 evx2 coding upstream 30382 17852869 ~ 17857052 (-)
nfe2l2a NA coding upstream 195592 18018079 ~ 18025208 (-)
pde11a pde11a,LOC102790363 coding upstream 243531 18066018 ~ 18112342 (-)
casp10 NA coding upstream 341696 18164183 ~ 18171021 (-)
G124691 NA non-coding downstream 386538 17347911 ~ 17350746 (-)
G124673 NA non-coding downstream 399024 17248369 ~ 17338260 (-)
G124695 NA non-coding downstream 442644 17291927 ~ 17294640 (-)
G124693 NA non-coding downstream 446846 17287949 ~ 17290438 (-)
G124679 NA non-coding downstream 507168 17227899 ~ 17230116 (-)
G124872 NA non-coding upstream 199922 18022409 ~ 18023477 (-)
G125000 NA non-coding upstream 269840 18092327 ~ 18092530 (-)
LOC120569840 NA non-coding upstream 386251 18208738 ~ 18211956 (-)
LOC120570508 NA non-coding upstream 993359 18815846 ~ 18819321 (-)
G125108 NA non-coding upstream 1005055 18827542 ~ 18828502 (-)
fastkd1 fastkd1,LOC102780871 other downstream 694912 17035373 ~ 17042372 (-)
LOC120570068 LOC103362129,LOC101485094 other downstream 1347390 16381250 ~ 16389894 (-)
gcgb gcg other downstream 1356519 16378488 ~ 16380765 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other downstream 1514548 16207690 ~ 16222736 (-)
G124303 dapl1 other downstream 1635691 16099278 ~ 16101593 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other upstream 290623 18113110 ~ 18115097 (-)
prkra prkra other upstream 334245 18156732 ~ 18163749 (-)
G125089 dct,LOC102781940 other upstream 872993 18695480 ~ 18699802 (-)
G125090 NA other upstream 878400 18700887 ~ 18704677 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 1409500 19231987 ~ 19258846 (-)

Expression


Co-expression Network