supt5h (supt5h)


Basic Information

Item Value
gene id supt5h
gene name supt5h
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 310607 ~ 384188 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU17487
AATCTCGCGGCTGCCCAAGAAGACGTGAGAGACGTCAGACTAATCGAAATAAGGGGatatttacttttattactCAACTTATAAGATATTGAACAGAAGCGGGAGGTCATACGGTGTGCTCCGGGCAGCTAAGATGTCTGACAGCGACGACAGCGACTTCTCCGACAACCAGAGCGAGCGCAGCAGCGATGGAGAAGCCGAGGAAGTGGAGAATGAGgagGAGACGGGCAGCCCCGTGGGCAGCGACAAGGTAGCGGAGGAGGAGGGCGAAGACctggaggacgaggaggagtacgacgaagaggaggaggaggacgatgaGGAGGGTCCCAGGAAGAAGAAGCCCCGACACGGAGGGTTCATCCTGGACGAAGCCGACGTGGACGATGAGTACGAAGACGAGGAGGATCAGTGGGAAGAAGGAGCGGAAGACATTCTGGAGAAAGtgtcgAACATCGACCACGTGGTTCTGGATGAAGACCACTCTGGATCCAGAAGGCTGCAGAACCTCTGGAGAGACTCCAGAGAGGAGGCGCTGGGTGAATATTACATGAGGAAATACGCCAAGTCCTCAGGAGGGGAGCATTACTCCGGAGGGTCCGAGGAGCTCTCTGACGACATCACCCAGCAGCAGCTGCTTCCTGGGGTCAAGGACCCCAATCTGTGGACGGTCAAGTGTCGGATCGGCGAGGAGAGGGCGACGGCCATCGCGCTGATGAGGAAGTTCATCGCCTACCAGTTCACCGACACAcCTCTGCAGATCAAGTCCGTGGTCGCCCCGGACCACGTCAAAG
>XM_039778484.1
GAGAGTTCCCCCAGCTTTTCGAAATCTCGCGGCTGCCCAAGAAGACGTGAGAGACGTCAGACTAATCGAAATAAGGGGatatttacttttattactCAACTTATAAGATATTGAACAGAAGCGGGAGGTCATACGGTGTGCTCCGGGCAGCTAAGATGTCTGACAGCGACGACAGCGACTTCTCCGACAACCAGAGCGAGCGCAGCAGCGATGGAGAAGCCGAGGAAGTGGAGAATGAGgagGAGACGGGCAGCCCCGTGGGCAGCGACAAGGTAGCGGAGGAGGAGGGCGAAGACctggaggacgaggaggagtacgacgaagaggaggaggaggacgatgaGGAGGGTCCCAGGAAGAAGAAGCCCCGACACGGAGGGTTCATCCTGGACGAAGCCGACGTGGACGATGAGTACGAAGACGAGGAGGATCAGTGGGAAGAAGGAGCGGAAGACATTCTGGAGAAAGAGGAGGCTGAAGtgtcgAACATCGACCACGTGGTTCTGGATGAAGACCACTCTGGATCCAGAAGGCTGCAGAACCTCTGGAGAGACTCCAGAGAGGAGGCGCTGGGTGAATATTACATGAGGAAATACGCCAAGTCCTCAGGAGGGGAGCATTACTCCGGAGGGTCCGAGGAGCTCTCTGACGACATCACCCAGCAGCAGCTGCTTCCTGGGGTCAAGGACCCCAATCTGTGGACGGTCAAGTGTCGGATCGGCGAGGAGAGGGCGACGGCCATCGCGCTGATGAGGAAGTTCATCGCCTACCAGTTCACCGACACAcCTCTGCAGATCAAGTCCGTGGTCGCCCCGGACCACGTCAAAGCCGTAACGCCACGCATTGGAGTCGACGGCAACGCTCTGCGCATGGGTCTGTGGAACCAGCAGATGGTTCCCATCAAGGAGATGACGGACGTCCTCAAAGTGGTCAAAGAAGTCACCAACCTGAAGCCCAAGTCCTGGGTCCGGCTCAAGAGAGGCCTGTACAAGGACGACATCGCTCAGGTGGACTACGTGGAGCCGAGTCAGAACACCATCTCCCTGAAGATGATCCCGCGTATAGACCTGGACCGCATCAAGGCCAAGATGAGCCTGAAAGACTGGTTCGCCAAGAGGAAGAAGTTTAAGAGACCGGCTCAGAGGCTTTTTGATGCAGAAAAgatcagGTCTCTCGGAGGGGAGGTCAGCCACGACGGAGACTTCATGATCTTCGAGGCGAACCGATACAGCCGCAAAGGTTTCCTGTTCAAGAGCTTCGCCATGTCTGCTGTGATCACTGACGGGGTGAAGCCCACCCTGTCGGAGCTGGAGAAGTTCGAGGACCAGCCCGAAGGAATCGACCTGGAGGTGGTCACCGAGTCAGGTACTGGTACCGGACCGGCTCGGGAGCGAGAACACAACCTGCAGGCGGGCGACAACGTGGAGGTCTGTGAGGGAGAGCTGATCAACCTGCAGGGAAAAATCCTCAGCGTGGACGGCAACAAGATCACCATCATGCCCAAACACGAAGACCtgaagGACCCGCTGGAGTTCCCGGCGCACGAGTTGAGGAAGTATTTCCGGATGGGCGACCACGTGAAGGTGATCGCCGGGCGCTACGAGGGCGACACCGGCCTCATCGTCCGCGTGGAGGAGAACTTCGTCATCCTCTTCTCCGACCTCACCATGCACGAGTTGAAGGTGTTGCCCCGGGACCTGCAGCTCTGCTCGGAGACGGCGTCCGGCGTGGACGCCGGCGGGCAGCACGAGTGGGGCGAGCTGGTCCAGCTGGACCCGCAGACCGTCGGCGTCATCGTCCgactggagagagagacgtTTCagGTGCTGAACATGCACGGGAAGGTGATGACTGTGCGGCACCAGGCGGTGAACCGCCGGAAGGACAACCGCTTCGCCGTGGCGCTGGACTCGGAGCAGAACAACATCCACGTCAAAGACATCGTCAAAGTCATCGACGGGCCGCACTCGGGCCGCGAAGGGGAGATCCGCCACCTGTTCCGAGGCTTCGCCTTCCTCCACTGTAAGAAGCTGGTGGAGAATGGAGGCATGTTCGTCTGCAAGACCCGACACCTGGTGTTGGCCGGCGGATCCAAGCCCCGAGATGTGACCAACTTCACCGTGGGAGGATTCGCTCCAATGAGCCCTCGCATCAGCAGTCCCATGCACCACGGAGGAGGAAGTGAGTGTCAAGAACTTATTCCACgaggaggaggaggaggaggaatgggCCGGGGCAGAGGACGCAGAGACAACGAGCTGATTGGTCAGACGGTCCGCATCTCGCAGGGTCCTTACAAAGGTTACATTGGTGTGGTGAAGGACGCAACGGAGTCTACGGCCAGAGTAGAGCTGCACTCCACCTGTCAGACCATCTCTGTAGACCGACAGCGCTTAACTACCATGGGAGCGAAGAGACACAGCGGAATGACCTCCACCCACGGGCGTACGCCCATGTACGGCTCCCAGACGCCCATGTACGGTACCGGCTCCAGAACGCCCATGTACGGCTCCCAGACACCCATCCATGAAGGAAGTCGTACACCTCACTACGGATCGCAGACCCCACTGCATGATGGGAGCAGGACGCCGGGTCAGAGTGGAGCCTGGGACCCCAGCAACCCCAACACACCTTCCAGGAATGAAGAGGAGTACGACTTCGGCTACGACGACGAGCCCTCCCCGTCCCCTCAGGGCTACGGGGGGACCCCCAACCCCCAGACACCCGGTTACCCAGAAGTCCCCTCTCCGCAGGTCAACCCTCAGTACAACCCCCAGACGCCTGGCACGCCGGCTATGTATAACACGGAGCAGTATTCTCCCTATGCGGCCCCGTCCCCTCAGGGCTCCTACCAGCCCAGTCCGAGTCCCCAGAGCTACCACCAGGTGGCGCCCTCACCGGTCGGCTACCAGAACACCCACTCTCCAGCCAGCTACCACCCGACACCTTCCCCCATGGCTTATCAGGCCAGCCCCAGTCCCAGCCCGGTGGGCTACAGCCCCATGACGCCCGGCGCGCCCTCCCCGGGCGGGTACAACCCTCACACCCCGGGCTCCAACATCGAGCAGGGCGGCAGCGACTGGGTCACCCCCGACATCCTGGTCCGCGTCAAGGACTCCTTCATGGACCTGATGGGGCAGACCGGTGTCATACGGAGCGTCAcgGGCGGGATGTGTTCGGTGTTCATGCAGGAGTCTGAGAAGGTGGTCAGCATCAGCAGCGATCACCTGGAGCCCATCACTCCCACCAAGAACAACAAGGTGAAGGTGATCCTGGGCGAAGACCGCGAGGCCACGGGCATCCTGCTGAGCATCGACGGAGACGACGGCATCGTCCGCATGGAGCTGGACGACCAGCTCAAgatcctcaacctgaggttcctGGGACGCCTGGAgcactgagagacacacacacacacaca

Function

symbol description
supt5h Enables DNA binding activity. Acts upstream of or within several processes, including generation of neurons; regulation of signal transduction; and regulation of transcription elongation from RNA polymerase II promoter. Located in nucleus. Is expressed in brain and optic cup. Orthologous to human SUPT5H (SPT5 homolog, DSIF elongation factor subunit).

NR:

description
PREDICTED: transcription elongation factor SPT5

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15172 SUPT5H, SPT5; transcription elongation factor SPT5

RNA

RNA id representative length rna type GC content exon number start site end site
TU17487 False 794 TUCP 0.35 10 361387 384166
XM_039778484.1 True 3421 mRNA 0.60 31 310607 384188

Neighbor

gene id symbol gene type direction distance location
chp2 LOC108241578,LOC107097862,LOC105915343 coding downstream 114318 186389 ~ 196289 (-)
dlc NA coding downstream 208252 86153 ~ 102355 (-)
il15l NA coding upstream 24985 409173 ~ 461344 (-)
plekhg2 plekhg2,LOC103150908 coding upstream 89365 473553 ~ 713695 (-)
LOC120573248 NA coding upstream 186339 570527 ~ 575826 (-)
LOC120573127 NA coding upstream 382701 766889 ~ 778667 (-)
LOC120549306 NA coding upstream 402492 786680 ~ 789067 (-)
G13134 NA non-coding downstream 16509 293819 ~ 294098 (-)
G13130 NA non-coding downstream 31299 258011 ~ 279308 (-)
G13131 NA non-coding downstream 37310 272592 ~ 273297 (-)
G13089 NA non-coding downstream 135453 173722 ~ 175154 (-)
G13088 NA non-coding downstream 137149 172245 ~ 173458 (-)
G13211 NA non-coding upstream 92883 477071 ~ 536982 (-)
G13206 NA non-coding upstream 132281 516469 ~ 550756 (-)
G13220 NA non-coding upstream 184444 568632 ~ 568983 (-)
LOC120573257 NA non-coding upstream 200539 584727 ~ 596257 (-)
G13225 NA non-coding upstream 251058 635246 ~ 727829 (-)
LOC120544598 timm50,LOC102777204 other downstream 160375 119555 ~ 150232 (-)
cep43 NA other downstream 273783 7487 ~ 36824 (-)
G13195 triap1 other upstream 2213 386401 ~ 387384 (-)
G13228 NA other upstream 349080 733268 ~ 736542 (-)
si:ch211-137a8.2 NA other upstream 356264 740452 ~ 750503 (-)
LOC120571545 NA other upstream 585460 969648 ~ 977738 (-)
G13587 NA other upstream 743703 1127891 ~ 1197686 (-)

Expression


Co-expression Network