XLOC_004765 (nbr1a)


Basic Information

Item Value
gene id XLOC_004765
gene name nbr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27213733 ~ 27229858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009424
CTGAATCTAGCGATGTAAACAAGAACGCAAAAGACAAGTCTCACAGTGTTGACAGCACCACGGGCATTTAGAGCGTCGTATCCCCTCATCAAACGCTTCCGTTGACTCTGGCTCACAGACATGAACCTCCCCGTCACTGTCAAAGTGAACTTTAGGGGCAACGTGAAGAAATTTCCAGTCTTGGACACGAACAAAGCACAGTGGGAGACTGTGGAGGCCTGGATTAAAACTACTTTCGGCTTGAGCCATTTTCAAGTGAAATATTTTGACGAGGACAACGAAGAGgTGTGCATAAACAGTCAAGATGAATATACAGAAGCTCTAAAGagtgCGTTTAAACAAGCCAACCAGCTCCACATGAATGTCTATAAGATGAAGGGTCAGGCAGAGGGTGGTGCAGTTAAGGCAGAGCTGAAGGAACTAAAGATAGACCCCAGACCAGCTCCGCCATATCGAGCTAGGGTCAAGATGGCAGACAAAGAGACCCAGGTGACCCCCGAGCGGGAATCGGCTGTGGCCAAAGAAAACAAAGGGATGAAAACTGAAGAAGAAGCAGTCCCCACTTGGTTTAAATCCTACATGGACAGGTTCAAAGACCAAGTGGTAAGGGAGGTGGTGGACAGGATGTGCAGTGAGTTTTCTGGCCAGTGTTGCACACACAGAGCCTCAGATCCTCCTGCAGAGGAACCAAGCACCTCTGGCACACAGAAACCAGTCAGCTCCACCACACTGAGGGCCTCTAGCTCAACTCCAAATTGCAGTAGTTGCAAAGGACCAGCCACTGGGGGAGGATATCAGTGCAGTGTTTGTCCATCTTGCATCTTATGCGAGCCATGCAGTCATAAACACGATCCCAGCCACAACCTAAAGAGAACAAGGACTCCTCTGTCTGTCCCTGAACGTGGAGTTACCCCTGAACCCAGGTTTCTGAGGCGGGGTGACAGGACGGTGAGAAAGGCGGAGAGGCAGCGTCTAAAAGCAGAGCGGAGGCAGCTGAAGGCTGAGGTGAAGGAGATCAAGAAGAAGCTGAGGCTGGAGAAGAGAGGTCTGCTGTGGAGTGGAGCCTCCAACGGGACCAGCACCTCAGGCCTTGCCCCCGCTCCCGCCCCGTCTCTAGGTGCAGGACCAGCCCCAGCTCCGGCCCTGTGCCCAGACCCTCAAACTTCCAGTCCAGAGGGTCCCAAGGTCTCCGGCTCCACCTTGGTGCCCACAATGACTGCCTTGTTTCTGGATGAGAATCTACCAGATGGCACTTGTCTGGAGCCAGGCACCAAGTTCATCAAGTACTGGAAGATGAGGAACACTGGCAACATCAGCTGGACTTCCGACACTAAGTTGAAGTTCATGTGGGGCAACCTGACCCTGGGATCACGAGAGCATAAAGAGGTCGCAGTGCCCTTTCTGCAGCCGGGGCAGGTTGGCGTGGTGAGTGTGGCGTTTGTGGCACCCCTGCTGGAGGGCACCTACACGTCTCACTGGCGCCTGGCACATTGTGGTGTGCAGTTTGGGCCCAGAGTGTGGTGTAGCATTGTGGTGGTGCCAAGCACAGGGCAGAAACCCAGCATCCACTGCAGCAAATCACTGCGGACTGATCTGTGTCTAATGGGGAAAGACGGCATGTTCTGGTCAGGCACCAGAGACTGTGAAGTGTCGGCCAGCTCCAGAAGAGAATACTGCATCCCCTCTGTTGACTTGCTGACAGCACAGGATCTGCTGTCCTTTGAGTTACTGGATATAAACATTGTGCAAGAATTGGAGAAAGTCCCAGCCAATGCTCCATCTGATATGACCTCCTGTGTATCTCCAACTCTTCACCATGGAGCTTTGTTTGGGAAGCACGGAACAGGACAAAGCAAAGTCGAAGTTGGACGTTCATGCAGGAAGAAAATTCAAGTCCTGCAGCCTCAGAGACAAAACGAGCTTCTGGATGTTCCAGGCAATGAGGAAGGAGACGAAGACATCAGTGGCACTCAGTTTGTGTGTGAGACTGTGATTCGCTCTCTGACTCTTGAGGAGGAACCAGAACGCAAACCTCAACGCAGAGCACGGCCCAGCCTGAGGAGGCATGATGTTCCAGATCCTGTTCGCTTAAAGGAGAGATCAGTGCCGGTGAAGAATGACAGACCAGTCATAAACAGGCCTGAGGCTCCAGTTCCTGTGTCAAAGCCAATCATAACAGATGAACCTGTCTTTCCAGTTTTTACAGAGGCATTGATTGGCTCAAATGAAAACCTCTACACCGACCCAGCTGCACAGGAGGAGAATGAAGAGGAAGCGGAACAAAAGGGACGTGAAAATGAgcaagaaaaagaggaagaagcAGGAGAGTGGGATGAGGTGAGCAGCCAGGTGTCCTCTGCCTCATCTGAGGACTACATTGTCATCCTGCCTGACTGCTTCGATACTTCCAGGCCCCTGGGAGAATCGATGTATAGCTCTGCAATGTCCCAGGCTGCAGTACCTCTTGCCAATGGGCCAGAGGCACCGCAAAACCCAAGCACGGCTGAAGGAGAGAATGAAGAGCCAAGCCCTGTCGCAGTTCTTCAGAACAGCCTGAACCGGATGCTGTCCACCTCTCAGATACTGGACACTCCTCCTCTGATTCCAGAGATGGTTCCTGTGCCTGTCGCTCTGTCACCACCCCCGTCTCTCCGAACACACAGATTAGTGAGATCTCATGATGTTGAGTCAGAACCAGGGGATGAGAACACCTCATGCCAACCCGAGGATGACTCAAGCGGTTGCAGATCAGCTCATTTAGAGGCCCCTGTTAGTGCCTTTGAGACCTGTGGCCCCCAGGATCCCCGGGCACGTAATGGTGGTCTGACGGAGGGGCTGGTGAAGGGAGCTCTGTCTGTAGCTGCTTCTGCTTATAAAGCACTGTTCACAGGCCAGAGCACACCTGCACAGCGGCCTGAAGTGGACCCAGCCTGTGAAGACGCCTCATTAATGGCTGTATTACAGGAGATGGGCTTCAGCAACCAGCCGCTCAACCAGAGGCTGCTGAGAAAGCATCACTACAACTTACTTGATGTGGTCAACGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGCCGCGACCTCAACGACGTGTAAGAATTGTAAATGATTTCATTGTGTTGCAGCTTTCTGTCAGAACAGGAGAAACACAGCTGATGTTTATTTGTTAGAGAGTCTGGAGAAGAAAAAGAGAGAACTATATCACTATAACTGACAGTAGCTGCAATGATGCAATTACTTGATTGTAAACTTTTAGTTTCATGTTTGTAGGACATTATGAATGGGGAAAATACACAAGGTTTATCAAAGGGAAATTTCACCatttaaaaaaggacattttctTCACTTACTCAGCTTGATTCAGACTCTTTTCAGATTCTTATTTCTGTtgggacacaaaagaagatactttgaagagtGTTGAAATTCAGTAGTCGTTTGCTCccatagtatatatatttttttcaatggccaacattctttaaaataccttcttttgtgttcaacaaaagaaagaaacttgtaaaggtttggaaccacttgagggtgagtgaatagtgagtaaatgttcattttttggtgaactgtccctctTTAAGCAGTCTTAACGCTACCTTTATTCAGTGCGTGTGCCCTACTAACCTGTTAGGTAGGCTTCAGGTAAATTTTGTACTGCTTGATTAGATATGATGATTAATTTGAAACAATACCAGAGGGTTTCGGTTTGTTTGAGCACTTTTGCCTCTTGGAGGAAAGCTATATAAAGAACAGCCTGTGTTGATTTTGTTATTTGTCACGGTGACCTTTATATTTGTATATCTTATTTTAAATCACACTACTTCATGCGTCACACTAAGGTATTGGGCTGCCAAACTTATAGGAATGTGCAATGAGTTTTTCAGTCATGCTTAACAcaacgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattggtcaaAGATTTTGCTATAGGCACCAATTTTGGTCATCTTTGTCATTTTCATGTGCAATGTATTATTATGAACTGAAGGCTTATCAACATGGCTTTTGTGTCCAACACAGTGAATAAAAACATTCCATTatca
>TCONS_00009425
CAAAAGACAAGTCTCACAGTGTTGACAGCACCACGGGCATTTAGAGCGTCGTATCCCCTCATCAAACGCTTCCGTTGACTCTGGCTCACAGACATGAACCTCCCCGTCACTGTCAAAGTGAACTTTAGGGGCAACGTGAAGAAATTTCCAGTCTTGGACACGAACAAAGCACAGTGGGAGACTGTGGAGGCCTGGATTAAAACTACTTTCGGCTTGAGCCATTTTCAAGTGAAATATTTTGACGAGGACAACGAAGAGgTGTGCATAAACAGTCAAGATGAATATACAGAAGCTCTAAAGagtgCGTTTAAACAAGCCAACCAGCTCCACATGAATGTCTATAAGATGAAGGGTCAGGCAGAGGGTGGTGCAGTTAAGGCAGAGCTGAAGGAACTAAAGATAGACCCCAGACCAGCTCCGCCATATCGAGCTAGGGTCAAGATGGCAGACAAAGAGACCCAGGTGACCCCCGAGCGGGAATCGGCTGTGGCCAAAGAAAACAAAGGGATGAAAACTGAAGAAGAAGCAGTCCCCACTTGGTTTAAATCCTACATGGACAGGTTCAAAGACCAAGTGGTAAGGGAGGTGGTGGACAGGATGTGCAGTGAGTTTTCTGGCCAGTGTTGCACACACAGAGCCTCAGATCCTCCTGCAGAGGAACCAAGCACCTCTGGCACACAGAAACCAGTCAGCTCCACCACACTGAGGGCCTCTAGCTCAACTCCAAATTGCAGTAGTTGCAAAGGACCAGCCACTGGGGGAGGATATCAGTGCAGTGTTTGTCCATCTTGCATCTTATGCGAGCCATGCAGTCATAAACACGATCCCAGCCACAACCTAAAGAGAACAAGGACTCCTCTGTCTGTCCCTGAACGTGGAGTTACCCCTGAACCCAGGTTTCTGAGGCGGGGTGACAGGACGGTGAGAAAGGCGGAGAGGCAGCGTCTAAAAGCAGAGCGGAGGCAGCTGAAGGCTGAGGTGAAGGAGATCAAGAAGAAGCTGAGGCTGGAGAAGAGAGGTCTGCTGTGGAGTGGAGCCTCCAACGGGACCAGCACCTCAGGCCTTGCCCCCGCTCCCGCCCCGTCTCTAGGTGCAGGACCAGCCCCAGCTCCGGCCCTGTGCCCAGACCCTCAAACTTCCAGTCCAGAGTAAGGGCCACACTGAGAGGGGTCAGGGCTGGGTGACCTCCCTACCCAGCCCAGAACAAACATTATCAAGATTTATCACATTGTCTGTTATAGTTGAGTTATCGCTGGCAAATGGATGGAACTACCTCAAAATAGCACCCGCTGCCTTTATGTATTACGtccttttttgtacttttttgatATGAACTTCAAGGAAAAGACAGACGCTGAAACAAAGCTGTTCTGATGATCCTCTGTGCACTCAAACCAGGGGTCCCAAGGTCTCCGGCTCCACCTTGGTGCCCACAATGACTGCCTTGTTTCTGGATGAGAATCTACCAGATGGCACTTGTCTGGAGCCAGGCACCAAGTTCATCAAGTACTGGAAGATGAGGAACACTGGCAACATCAGCTGGACTTCCGACACTAAGTTGAAGTTCATGTGGGGCAACCTGACCCTGGGATCACGAGAGCATAAAGAGGTCGCAGTGCCCTTTCTGCAGCCGGGGCAGGTTGGCGTGGTGAGTGTGGCGTTTGTGGCACCCCTGCTGGAGGGCACCTACACGTCTCACTGGCGCCTGGCACATTGTGGTGTGCAGTTTGGGCCCAGAGTGTGGTGTAGCATTGTGGTGGTGCCAAGCACAGGGCAGAAACCCAGCATCCACTGCAGCAAATCACTGCGGACTGATCTGTGTCTAATGGGGAAAGACGGCATGTTCTGGTCAGGCACCAGAGACTGTGAAGTGTCGGCCAGCTCCAGAAGAGAATACTGCATCCCCTCTGTTGACTTGCTGACAGCACAGGATCTGCTGTCCTTTGAGTTACTGGATATAAACATTGTGCAAGAATTGGAGAAAGTCCCAGCCAATGCTCCATCTGATATGACCTCCTGTGTATCTCCAACTCTTCACCATGGAGCTTTGTTTGGGAAGCACGGAACAGGACAAAGCAAAGTCGAAGTTGGACGTTCATGCAGGAAGAAAATTCAAGTCCTGCAGCCTCAGAGACAAAACGAGCTTCTGGATGTTCCAGGCAATGAGGAAGGAGACGAAGACATCAGTGGCACTCAGTTTGTGTGTGAGACTGTGATTCGCTCTCTGACTCTTGAGGAGGAACCAGAACGCAAACCTCAACGCAGAGCACGGCCCAGCCTGAGGAGGCATGATGTTCCAGATCCTGTTCGCTTAAAGGAGAGATCAGTGCCGGTGAAGAATGACAGACCAGTCATAAACAGGCCTGAGGCTCCAGTTCCTGTGTCAAAGCCAATCATAACAGATGAACCTGTCTTTCCAGTTTTTACAGAGGCATTGATTGGCTCAAATGAAAACCTCTACACCGACCCAGCTGCACAGGAGGAGAATGAAGAGGAAGCGGAACAAAAGGGACGTGAAAATGAgcaagaaaaagaggaagaagcAGGAGAGTGGGATGAGGTGAGCAGCCAGGTGTCCTCTGCCTCATCTGAGGACTACATTGTCATCCTGCCTGACTGCTTCGATACTTCCAGGCCCCTGGGAGAATCGATGTATAGCTCTGCAATGTCCCAGGCTGCAGTACCTCTTGCCAATGGGCCAGAGGCACCGCAAAACCCAAGCACGGCTGAAGGAGAGAATGAAGAGCCAAGCCCTGTCGCAGTTCTTCAGAACAGCCTGAACCGGATGCTGTCCACCTCTCAGATACTGGACACTCCTCCTCTGATTCCAGAGATGGTTCCTGTGCCTGTCGCTCTGTCACCACCCCCGTCTCTCCGAACACACAGATTAGTGAGATCTCATGATGTTGAGTCAGAACCAGGGGATGAGAACACCTCATGCCAACCCGAGGATGACTCAAGCGGTTGCAGATCAGCTCATTTAGAGGCCCCTGTTAGTGCCTTTGAGACCTGTGGCCCCCAGGATCCCCGGGCACGTAATGGTGGTCTGACGGAGGGGCTGGTGAAGGGAGCTCTGTCTGTAGCTGCTTCTGCTTATAAAGCACTGTTCACAGGCCAGAGCACACCTGCACAGCGGCCTGAAGTGGACCCAGCCTGTGAAGACGCCTCATTAATGGCTGTATTACAGGAGATGGGCTTCAGCAACCAGCCGCTCAACCAGAGGCTGCTGAGAAAGCATCACTACAACTTACTTGATGTGGTCAACGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGCCGCGACCTCAACGACGTGTAAGAATTGTAAATGATTTCATTGTGTTGCAGCTTTCTGTCAGAACAGGAGAAACACAGCTGATGTTTATTTGTTAGAGAGTCTGGAGAAGAAAAAGAGAGAACTATATCACTATAACTGACAGTAGCTGCAATGATGCAATTACTTGATTGTAAACTTTTAGTTTCATGTTTGTAGGACATTATGAATGGGGAAAATACACAAGGTTTATCAAAGGGAAATTTCACCatttaaaaaaggacattttctTCACTTACTCAGCTTGATTCAGACTCTTTTCAGATTCTTATTTCTGTtgggacacaaaagaagatactttgaagagtGTTGAAATTCAGTAGTCGTTTGCTCccatagtatatatatttttttcaatggccaacattctttaaaataccttcttttgtgttcaacaaaagaaagaaacttgtaaaggtttggaaccacttgagggtgagtgaatagtgagtaaatgttcattttttggtgaactgtccctctTTAAGCAGTCTTAACGCTACCTTTATTCAGTGCGTGTGCCCTACTAACCTGTTAGGTAGGCTTCAGGTAAATTTTGTACTGCTTGATTAGATATGATGATTAATTTGAAACAATACCAGAGGGTTTCGGTTTGTTTGAGCACTTTTGCCTCTTGGAGGAAAGCTATATAAAGAACAGCCTGTGTTGATTTTGTTATTTGTCACGGTGACCTTTATATTTGTATATCTTATTTTAAATCACACTACTTCATGCGTCACACTAAGGTATTGGGCTGCCAAACTTATAGGAATGTGCAATGAGTTTTTCAGTCATGCTTAACAcaacgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattggtcaaAGATTTTGCTATAGGCACCAATTTTGGTCATCTTTGTCATTTTCATGTGCAATGTATTATTATGAACTGAAGGCTTATCAACATGGCTTTTGTGTCCAACACAGTGAATAAAAACATTCCATTatca
>TCONS_00009426
GACGGTGAGAAAGGCGGAGAGGCAGCGTCTAAAAGCAGAGCGGAGGCAGCTGAAGGCTGAGGTGAAGGAGATCAAGAAGAAGCTGAGGCTGGAGAAGAGAGGTCTGCTGTGGAGTGGAGCCTCCAACGGGACCAGCACCTCAGGCCTTGCCCCCGCTCCCGCCCCGTCTCTAGGTGCAGGACCAGCCCCAGCTCCGGCCCTGTGCCCAGACCCTCAAACTTCCAGTCCAGAGAAAAGACAGACGCTGAAACAAAGCTGTTCTGATGATCCTCTGTGCACTCAAACCAGGGGTCCCAAGGTCTCCGGCTCCACCTTGGTGCCCACAATGACTGCCTTGTTTCTGGATGAGAATCTACCAGATGGCACTTGTCTGGAGCCAGGCACCAAGTTCATCAATTACTGGATATAAACATTGTGCAAGAATTGGAGAAAGTCCCAGCCAATGCTCCATCTG

Function

symbol description
nbr1a Predicted to enable ubiquitin binding activity. Predicted to be involved in macroautophagy. Predicted to be active in phagophore assembly site. Orthologous to human NBR1 (NBR1 autophagy cargo receptor).

GO:

id name namespace
GO:0016236 macroautophagy biological_process
GO:0000407 phagophore assembly site cellular_component
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9112 Predicted to enable ubiquitin binding activity. Predicted to be involved in macroautophagy. Predicted to be active in phagophore assembly site. Orthologous to human NBR1 (NBR1 autophagy cargo receptor).

Ensembl:

ensembl_id ENSDARG00000077297

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009424 False 4136 mRNA 0.48 21 27213733 27229858
TCONS_00009425 False 4359 lncRNA 0.48 20 27213760 27229858
TCONS_00009426 True 454 processed_transcript 0.56 3 27218993 27220589

Neighbor

gene id symbol gene type direction distance location
XLOC_004764 skap1 coding upstream 6829 27156943 ~ 27206904 (+)
XLOC_004763 hoxb1b coding upstream 70899 27141140 ~ 27142834 (+)
XLOC_004762 dre-mir-10a coding upstream 78766 27134869 ~ 27134967 (+)
XLOC_004761 hoxb5b coding upstream 81998 27129659 ~ 27131735 (+)
XLOC_004760 hoxb6b coding upstream 84965 27127139 ~ 27128768 (+)
XLOC_004766 tmem106a coding downstream 1354 27231212 ~ 27237032 (+)
XLOC_004767 arl4d coding downstream 13201 27243059 ~ 27245757 (+)
XLOC_004768 dusp3a coding downstream 56136 27285994 ~ 27305823 (+)
XLOC_004769 sost coding downstream 101466 27331324 ~ 27335652 (+)
XLOC_004770 meox1 coding downstream 232367 27462225 ~ 27469267 (+)
XLOC_004754 BX469896.1 non-coding upstream 317117 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 379541 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 521682 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 620435 26589644 ~ 26593298 (+)
XLOC_004777 NA non-coding downstream 1147172 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1387843 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1703666 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1783715 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 2082707 29312565 ~ 29373414 (+)

Expression


Co-expression Network