LOC120571647 (LOC103360213,LOC102310147)


Basic Information

Item Value
gene id LOC120571647
gene name LOC103360213,LOC102310147
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4237571 ~ 4852575 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU18919
AGAGTTAGTGTCTCAGCTTTTTCTCTCGGTGTGGAGCTCCAGCTGAAGgacccatcagagaccaaaccctgctgaacctgaacctgaacctgaacctgaacctgaacccagctgtgggTCCATGAAGAGTCACCGGTCCATGGAGCCACCACTACTTTAAGAAAAGACCTGTAAGGGAGAGGAGAATAGAAATGGAGGAGAGGCTACTTgaaatggaggagagaggatTGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAACAATGGAAAGGGAAATTGAAATGTTAAGAAGAAGATTGAGGTGAGTTGTGAACATCCAGCAAACTGGAACGAGTCTCATTGGATGGAACTACGTCCCGTCTGGGTTGTTTTGTGTCATTATTGTAGTTGATGACTGAAATGAGAATAGTTTTGCAAAATAATTTCCTGTTTCACTCAAAATATCTGCCTTTTGgacaacattttta
>TU18920
tgcaggattcaggagtgaagctgatctctgttggactgaagagtccacactgcagactggagactctcagactgaaTGGCTGTaaactgtcagagagaagctgtgaagatctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacgaactgcaggattcaggagtgaagctgatctctgttggactgaagagtccacactgcacactggagatGCTCAGGTCAGATCAAGAAtaataatctttgaaaaaaaaaacagtattgaaaaaaaatttggaaacattcaaagaatttgaatgttttcaaagtattttattctgatttagAATCACTTCATAAAGAAT
>XM_039820708.1
CTTTCCAGAGTTAGTGTCTCAGCTTTTTCTCTCGGTGTGGAGCTCCAGCTGAAGgacccatcagagaccaaaccctgctgaacctgaacctgaacctgaacctgaacctgaacccagctgtgggTCCATGAAGAGTCACCGGTCCATGGAGCCACCACTACTTTAAGAAAAGACCTGTAAGGGAGAGGAGAATAGAAATGGAGGAGAGGCTACTTgaaatggaggagagaggatTGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAACAATGGAAAGGGAAATTGAAATGTTAAGAAGAAGATTGAGGACCCAAAAGAGACCAGAGTCCCCTGatgctgaacctgaacctgaacctgaacctgaacccagctgtgtgtcctttaaGAGTGACCGGTCACATCAACGCTATATTAATTTTAAGAGTCAGCAATCCTCTGCTGAAAAGAGgatccatcaaagaccagactctgctggacctgaacccagctgtgtgtccttcaagAGTGACCGGTCAAATCATCGCTTTATTGACTTTAAAGGTCAACAACCTTCTGCTGAAAAGAGAGTAGACCAGGAGAGCTCAGAGGTTCCCAGTGAtcagtctgcccagcagcatcaaacacacctggactccatatttatgctgctggaggagaacatcggcacttttgtgaagaacgagctgaagaagatccagaagGTTCTGAATCCAGATTACACAGAATGcttagagagtcagagggaggatgaggatgaagagcagaggagcagcagagaggcatttctgaagattacactgcacttcctgaggagaatgaagcaggaggagctggctgaccgtctgcagagcaGAAGTTTTGCTGGAGTTTGTAAACGTAAACTCAAATCTAACATAAACAAGAAgtaccagtgtgtgtttgaggggattgctaaagcaggaaacccaacccatctgaatcagatgttcacagagatctacatcatggagggagggactgcagaggtcaataATGAACATGAGGTCAGGCAGATTGAAACAGCGTCCAgaaaaccagacagaccagaaacaacaatcagacgagaagacatctttaaagcccCACATGGAAgagataaaccaatcagaacagtgatgactAAGGGAGTGGCTGGaatcgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaAAGTtaaccaggacatccagttcataTTTCCATTCACTTTCAGAGAGCTGAACGTGCTGAAAGAAAAAAGGTACAGCTTGTTGGAACTTGTTGATcacttctttagtgaaaccaaagaagccggaatctgcaggtttgaagagttccaGGTTGTGTTCATTTTTGatggtctggatgagtgtcgacttcctttggacttccacaacactgaggtcctgactgatgttacagagtccacctcagtgggtatgctgctgacaaacctcatcagggggaaacTGCTTCCATCTGCTCGACTCTGGATCACCACACGAcctgctgcagccaatcagatccctcctgagtgTGTTCACATGGTGACAGAagtcagagggttcactgacccacagaaggaggagtacttcaggaagcgATTCAGAAAGAAGAAGCAGGaaagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtctttTGCTGGATCAcagctacagttctggaggacatgttgaagaccagagaggTACGAGAGCTGCCTAacaccctgactgagatgtacatcaACTTCttggtggttcagtccaaagtgaAGAACATCAAGTATGATGGAAAATCTGAGACAGATCAACACTGGAGtccagagagcagagagatgaTCAcgtctctgggaaaactggcaTTTGAGCAgctaaagaaaggcaacatgatcttctatgaatcagacctgacagagtgcGGCATCGATATCAGATCAGCCTCAGTTTAttcaggagtgttcacacagatctttaaagaggagagtggactgtaccaggacaaggtgttctgcttcgtccacctgagtgttcaggagttcctggctgctcttcatgttcatctgacattcatcaactctggagtcaacctgctgtcagaaGAACAATCAACATCCCGGCGGCCTAATCCCTTCAGAGTCAAACCTAAAGTTAAAAGTCTTCATCAGAGTGCGGTGGACAAGGCCTTAGAGAGTGCAAATGGACAtctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagaatctcCTACGAGGCCTGATGACACAGACCGGAAGTAGCTCACAGACCAATCAGGAAACAGTGGAGTACATGAAGACAAAGATCAGTGATGATCTGTCTtcagagagaagcatcaatctcttccactgtctgaatgaactgaatgatcatTCTCTAGTGGAGGAGATCCAACGGTTCCTGAGTTCAGGATGTCTCTCCACAGATAAattgtctcctgctcagtggtcagctctggtcttcatcttactgtcatctgAAAAAGATCTGgatgtgtttgacctgaagaagtactctgcttcagagaaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaaacTCTGTcatcagttctcagctcccagtcctgtagtctgagagagctggacctgagtaacaacaacctgcaggattcaggaggaaAGCTTATCTctgatggactgaagagtccacactgcagactggagactctcagtctgtcaggctgtctgatcacAGAGGAAGGCAGTtcttctctggcctcagctctgagctccaaccaCTCCTATCTGAGAGTGCTcgacctgagctacaatcatccaggagactcaggagtgaagctactGTCAGCGGGACTGGAGGATCctctctggagactggacactctcagggtagagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcgcactggacacaaacacagtgaacagaaaactcaaactgtctgacaacaacaggaaggtgacattaGTGGAGGAGGATCAGTCATATCCTGATCATTCAGAGAGGTTTGACCACTGGTATCAGCTgttgtgtagagatggtctgactggtcgctgttactgggaggtcgagaggagaggagaggtttctatatcagtgagttacagaggaatcaggaggagaggaaTCAGTGAagactgtgtgtttggatgtaatgatcagtcctggagtctgttCTGCTCTGGTGATCATTACTCTGTCTGGCACAATAACAGAGGaacatccatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcagcctctctatccTGGGTTTGGGATCTTGTCTgattcctcagtgtctctgtgtcctgtgtagGACGGAGAgtttcctcctgtttctcactgctgatcagttgagtctgtacaggatcacacttacagaaatatttcagcttattgttatgaactaatgaatgaacattgtataaaataattcagaatgattgaaCAGATTCCTTGTGAACATTGTAAACTCGTTCAACTTCCAgtcctttaaagatggaagctgtgatcatgaaattgtagaaatgcgttttgttttctttttgacgtttttgttgctatttTGTGTCTAAGCatcatgggagttgtagttgatCCTGAGCTGGTTGTGTTGGATGATAAAATAACTCAAACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18919 False 470 lncRNA 0.39 2 4237577 4239285
TU18920 False 367 lncRNA 0.57 3 4246442 4252134
XM_039820708.1 True 3940 mRNA 0.47 12 4237571 4852575

Neighbor

gene id symbol gene type direction distance location
LOC120544944 NA coding upstream 12254 4223592 ~ 4225317 (+)
LOC120571237 NA coding upstream 38215 4185906 ~ 4199356 (+)
LOC120544917 NA coding upstream 83055 4150582 ~ 4154516 (+)
LOC120571287 LOC105358025 coding upstream 694366 3537939 ~ 3543205 (+)
LOC120554338 NA coding upstream 889649 3347816 ~ 3347922 (+)
LOC120570934 NA coding downstream 69512 4922087 ~ 5063976 (+)
LOC120571428 NA coding downstream 313636 5166211 ~ 5173445 (+)
LOC120571154 NA coding downstream 367075 5219650 ~ 5230445 (+)
LOC120572059 NA coding downstream 594571 5447146 ~ 5461510 (+)
LOC120549121 NA coding downstream 690716 5543291 ~ 5547333 (+)
LOC120571758 NA non-coding upstream 75272 4154666 ~ 4162299 (+)
G14172 NA non-coding upstream 90828 4146317 ~ 4146743 (+)
G14171 NA non-coding upstream 94268 4143087 ~ 4143303 (+)
G14168 NA non-coding upstream 103916 4133199 ~ 4133655 (+)
G14162 NA non-coding upstream 115518 4077798 ~ 4122053 (+)
LOC120571679 NA non-coding downstream 12289 4864864 ~ 5088097 (+)
G14289 NA non-coding downstream 13639 4866214 ~ 4935883 (+)
G14290 NA non-coding downstream 25419 4877994 ~ 4931579 (+)
G14213 NA non-coding downstream 41294 4893869 ~ 4934414 (+)
G14225 NA non-coding downstream 67512 4920087 ~ 5036463 (+)
G14148 NA other upstream 182486 4019244 ~ 4055085 (+)
LOC120544739 NA other upstream 1241256 2977851 ~ 2996315 (+)
zgc:162872 LOC103361195,LOC100694875,LOC101467947,LOC102198539,LOC102776046 other upstream 1272799 2948634 ~ 2964772 (+)
LOC120571130 NA other upstream 1444726 2610872 ~ 2792845 (+)
G13555 NA other upstream 1499383 2726319 ~ 2738188 (+)
G14344 NA other downstream 658182 5510757 ~ 5528619 (+)
rnf169 NA other downstream 1540487 6393062 ~ 6404425 (+)
spcs2 spcs2 other downstream 1555410 6407985 ~ 6417509 (+)
G15019 NA other downstream 2120270 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 2545526 7398101 ~ 7399141 (+)

Expression


Co-expression Network