LOC120553302


Basic Information

Item Value
gene id LOC120553302
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5383630 ~ 5386305 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU19113
AAACTACACAATCAAACATTTTCCAGCAGGAATCCTATCCGAAGTCGAGAAACATTAACAGCGGCATCCAAGATTCCAGGTGTAATGGCTCCGgAGCAGTACACAAGCTCCAAGATGCCGACAGGGGCTGGGGGAAGTGTCATCCAGTCAATCCCAAAGAAGTCTCCCTCAATCTTCCAACCATGGGCCATTGGTGGTGGAACATCAGGCTGACTCTTCAGGGACCTTCTGTATATGGCTGCCTGATCTGCAGAGATGGCTTCTGATGCTACCTGACCTGATGTAACATGCCATGTCCTTGACCTCCATTGTGATGGCTGCTCTCTCGT
>XR_005638153.1
AAAACTACACAATCAAACATTTTCCAGCAGGAATCCTATCCGAAGTCGAGAAACATTAACAGCGGCATCCAAGATTCCAGGTGTAATGGCTCCGgAGCAGTACACAAGCTCCAAGATGCCGACAGGGGCTGGGGGAAGTGTCATCCAGTCAATCCCAAAGAAGTCTCCCTCAATCTTCCAACCATGGGCCATTGGTGGTGGAACATCAGGCTGACTCTTCAGGGACCTTCTGTATATGGCTGCCTGCAGATCTGCAGAGATGGCTTCTGATGCTACCTGACCTGATGTAACATGCCATGTCCTTGACCTCCATTGTGATGGCTGCTCTCTCGT
>XR_005638154.1
AAAACTACACAATCAAACATTTTCCAGCAGGAATCCTATCCGAAGTCGAGAAACATTAACAGCGGCATCCAAGATTCCAGGTGTAATGGCTCCGgAGCAGTACACAAGCTCCAAGATGCCGACAGGGGCTGGGGGAAGTGTCATCCAGTCAATCCCAAAGAAGTCTCCCTCAATCTTCCAACCATGGGCCATTGGTGGTGGAACATCAGGCTGACTCTTCAGGGACCTTCTGTATATGGCTGCCTGATCTGCAGAGATGGCTTCTGATGCTACCTGACCTGATGTAACATGCCATGTCCTTGACCTCCATTGTGATGGCTGCTCTCTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19113 False 329 lncRNA 0.50 4 5383631 5386305
XR_005638153.1 True 333 lncRNA 0.50 4 5383630 5386305
XR_005638154.1 False 330 lncRNA 0.50 4 5383630 5386305

Neighbor

gene id symbol gene type direction distance location
LOC120571154 NA coding upstream 153185 5219650 ~ 5230445 (+)
LOC120571428 NA coding upstream 210185 5166211 ~ 5173445 (+)
LOC120570934 NA coding upstream 319654 4922087 ~ 5063976 (+)
LOC120544944 NA coding upstream 1158313 4223592 ~ 4225317 (+)
LOC120571237 NA coding upstream 1184274 4185906 ~ 4199356 (+)
LOC120572059 NA coding downstream 60841 5447146 ~ 5461510 (+)
LOC120549121 NA coding downstream 156986 5543291 ~ 5547333 (+)
col4a3 NA coding downstream 255349 5641654 ~ 5711859 (+)
sst1.2 LOC104933374,LOC103361206 coding downstream 329965 5716270 ~ 5720289 (+)
sst1.1 LOC101485677,LOC102296407,LOC102206005 coding downstream 351833 5738138 ~ 5743105 (+)
G14282 LOC108250350,LOC108250349,LOC108250351 non-coding upstream 33558 4782335 ~ 5350072 (+)
G14317 NA non-coding upstream 76631 5213191 ~ 5306999 (+)
G14326 NA non-coding upstream 78735 5259491 ~ 5304895 (+)
G14327 NA non-coding upstream 79588 5260877 ~ 5304042 (+)
LOC120571762 NA non-coding upstream 86995 5295033 ~ 5296635 (+)
G14359 NA non-coding downstream 144999 5531304 ~ 5532129 (+)
G14353 LOC104946957 non-coding downstream 162650 5548955 ~ 5559454 (+)
G14372 NA non-coding downstream 237371 5623676 ~ 5633716 (+)
G14376 NA non-coding downstream 249339 5635644 ~ 5636188 (+)
G14761 NA non-coding downstream 334928 5721233 ~ 5721444 (+)
LOC120571647 LOC103360213,LOC102310147 other upstream 531055 4237571 ~ 4852575 (+)
G14209 LOC102792843 other upstream 856253 4500173 ~ 4527377 (+)
LOC120570718 LOC103473932 other upstream 933800 4363666 ~ 4449830 (+)
G14246 NA other upstream 962808 4367603 ~ 4420822 (+)
G14148 NA other upstream 1328545 4019244 ~ 4055085 (+)
G14344 NA other downstream 124452 5510757 ~ 5528619 (+)
rnf169 NA other downstream 1006757 6393062 ~ 6404425 (+)
spcs2 spcs2 other downstream 1021680 6407985 ~ 6417509 (+)
G15019 NA other downstream 1586540 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 2011796 7398101 ~ 7399141 (+)

Expression


Co-expression Network