LOC120544895 (LOC102787186)


Basic Information

Item Value
gene id LOC120544895
gene name LOC102787186
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 3899453 ~ 4015956 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU19350
ctctggtatttatcttactgtcatcagagaAAGATCTGgatgtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctaagagagctggacctgagtaacaacaacctgcaggattgaggagggaagctgatctctgttggactaaagagtccacactgcacactggagactctcagactgagtggctgtaacctgtcagagagaagctgtgaagatctgtcctcagttctcagctcccagtcctctagtctaaGAGAGCTGGAcatgagtaacaacaacctgcaggattcaggagggaagctgatctctgttggactaaagagtccacactgcacactggagactctcagtctgtcaggctgtctgatctcagaggaaggc
>XM_039778759.1
tccagaaggttctgaatccagattacccagaatgcttaGAGAGTCAGAAGGAcgatgaggatgaagagcagaggagcagcagagaggcatttctgaagatcacactgcacttcctgaggagaatgGAGCAGGACGAGCTGGCTGACCATCTGCAGCGCAGAAGTTCTGCTGGAGTTTGTAAAAGTAAACTCAAGACTAACTTAAACAAGAAGATCccgtgtgtgtttgaggggattgctaaaacaggaaacacaacccttctgaatcagatgttcacagagatgtaCATCATggagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacaaCGTCCAGAAAatcagacagaccagaaacaacaatcagacaagaagacatctttaaagccccacctggaagagaggaaccaatcagaacagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaaagccaaccaggacatcaAGTTCATATATCCATTCactttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgttgattACTTCTtcagtgaaaccaaagaagcaggaatctgcaggtttgaagagttctcggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttccacaacactgaggtcctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgcatctggataaccacacgacctgcagcagccaatcagatccctgctgagtgtgttgacatggtgacagaaATCAGAGGGTTCACTGATCCTCAGAAGGAAGAGTACTTCAGGAAGCGATTCAGAGACAAGAAGCAGGaaagcagaatcatctcccacatcaagagaTCACAAAGCCTCCACAgcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggacgtGTTGAAGACCAGAGGGGGAGGAGACCTGCCCAAGACCCTaactgagatgtacatccacttcctggtaGTTCAGTCCAAACTGAAGAACATAAAATACGGTGGAGGAGTTGGGACTGATTCAAACTGGAATAAAGAGACAAAGAAGATGATTTATTCTCTGGGgaaactggcttttgagcagctgcagaaaggcaacctaATCGTCTATGAATCcgacctgacagagtgtggcatcgatatcagagcagcctcagtgtactcaggattgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgCTTCGTCCATCtaagtgttcaggagtttcttgctgctcttcatgtccatctgactttcatcaactctggagtcaacctgctgtcagaaGAACAAACATCATTGTCGTGGTCTAAAGTATTCAGAGACAAATCATCATGtttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcaatgcagaccaatcacaatctcCTACAAGGCCTggtgacacagacaggaagtagctcaGAGACCAATCAGAAAGTAGTCAAGTGCATCAAGACGAAAATCTGTGagaatctgtctgcagagaaaagcatcaatctgttccactgtctgaatgaactgaatgatcgttCTCTAGTGGAGGAGATCCAACGGTTCCTGACATCAGGAAGTCTCTCCAAagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggacgtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctACTGAGTgactgtaacctgtcagagagaagctgtgcagctctgtcctcagttctcagctccccgtcctctagtctgagagagctggacctgagtaacaacaacctgcaggattccggagggaagctgatctctgatggactgaaaagtccacactgcagactggagactctcagtctgtcaggctgtctgatctcactgctggaggagaacaTTATCAACATTGATGAGAACATGAAAcgagctgaagaagatccagaaggtccagattacccagaatgctcaCAGGGtcagagggaggatgaggaCAAAGAGCAGatgaggagcagagaggcatttctgGAGATCACAAGgcacttcctgaggagaatgaagcaggaTGAGATGGCTGACCGTCTACAGAGCGGAAGTCCTGCTGGAGTTTGTAAGCGTAAACTAAAATCTCACCTAAACAACAAGTTCCAGggtgtgtttgaggggattgctaaattctgctggatcactgctacagttctggaggacgtGTTAAaaaccagagagggaggagagctgcccaagaccctggctgagatgtacatccacttcctggtggttcagtccagAGTGAAGAACATTAAGTATGATGGAGGAGTTGAGACAGATCCACACTGGATTCCAGAGAGCACGAAGATGATCAAGTCTCTGGGAAAAttggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgacagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagtggactgtaccaggacaaggtgttctgcttcatccatctgagtgttcaagAGTTTCtagctgctcttcatgtccatctgacattcaccaactctggagtcaacctgctgtcagaaGAACAAACATCAACACAGTTCTACCATagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaACAATCAGAATCTCCTACGGGGCCTGCTGATACCGACAGGATGTAGCTCAGAGGCCAATCAGGAAACAGTTgagtacatcaagaagaagatcagtGAGAAACTGTCTGCAGGaagaagcatcaatctgttccactgtctgaatgaactgaatgatcgttCTCTAGTGGAGGAGATAAAACAGTACCTGAGATCCGGTCGTCTCTCCACAGAtgaactgtctcctgctcagtggtcagctctggtatttatcttactgtcatcagagaAAGATCTGgatgtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctaagagagctggacctgagtaacaacaacctgcaggattgaggagggaagctgatctctgttggactaaagagtccacactgcacactggagactctcagactgagtggctgtaacctgtcagagagaagctgtgaagatctgtcctcagttctcagctcccagtcctctagtctaaGAGAGCTGGAcatgagtaacaacaacctgcaggattcaggagggaagctgatctctgttggactaaagagtccacactgcacactggagactctcagactgagtggctgtaacttatcagagagaagctgtgaagccttgtcctcagttctcagctcccagtcctctagtctgagagagctggacatGAGTAACAAtgacctgcaggattcaggagtgaagctgatctctgatggactgaagagtccacactgcacgcTGGAGACTTTCAGtctgtcaggctgtctgatctcagaggaaggctgtacttctctggtctcagctctgagctccaatccctcccatctgagagagctggacctgagctacaatcatccaggatACTCAGGGGTGAAGCTACTGTCAGTGGGACTGGAGGATCCTTTCTGGAGACTAAACACTCTCAGggtggagcctgctggagtcagatggttgacaccaggtctgctgtgttgtgtctcgtTCTCTCCatcagattcctgtgaactcacactcaacacaaacacagtgaacagaaacCTCAAATTGTctgacaacaggaaggtgacacgtGTGGAGGAgtatcagccatatcctgatcatccagagaggtttgactactggcctcagctgctgtgtagatatggtctgactggtcgctgttactgggaggttgagaggagaggagaggttaatatagcagtgagttacagaggaatgaggaggagaggacagagtgatgactgtgtgtttggaggtaatgatcagtcctggagtctgaaCTGCTCTGATGGTCGTTACTCTGTCTGGCACAATAACAGAGaaacatccatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtccagctggctctctgtccttttACAGAGtgtcctctgactcactgatccacctccacaccttaaACACTACATTCACTCAACCTCTTTATCCTGGGTTCTGGCTCAGGTCtcctggttcctcagtgtctctgtgtcgtgTGTAGGACtgagagtctcctcctgtttctcactgctgatcagttcagtctgtacaggatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19350 False 503 lncRNA 0.50 4 3940717 3992111
XM_039778759.1 True 4704 mRNA 0.48 14 3899453 4015956

Neighbor

gene id symbol gene type direction distance location
LOC120571265 fgf12,fgf12b,LOC104939444,LOC102791340,LOC102235588,LOC107670129 coding downstream 107771 3739762 ~ 3791682 (-)
LOC120570954 NA coding downstream 176782 3662000 ~ 3722671 (-)
LOC120570764 NA coding downstream 311972 3570134 ~ 3587481 (-)
LOC120544862 il1rap coding downstream 341891 3472480 ~ 3557562 (-)
LOC120571310 NA coding downstream 455515 3442448 ~ 3443938 (-)
LOC120544902 LOC103361205,LOC106936657,LOC106910224,LOC103150884,LOC103475299 coding upstream 36236 4052192 ~ 4078128 (-)
LOC120544909 NA coding upstream 72220 4088176 ~ 4138553 (-)
LOC120570840 NA coding upstream 645658 4661614 ~ 5252192 (-)
LOC120571626 NA coding upstream 933223 4949179 ~ 4975582 (-)
LOC120544953 NA coding upstream 1237038 5252994 ~ 5267295 (-)
G14508 NA non-coding downstream 8947 3889723 ~ 3890506 (-)
G14499 NA non-coding downstream 25237 3782051 ~ 3874216 (-)
G14507 NA non-coding downstream 27768 3871402 ~ 3871685 (-)
G14496 NA non-coding downstream 28718 3868894 ~ 3870735 (-)
G14428 NA non-coding downstream 135509 3730600 ~ 3763944 (-)
G14491 NA non-coding upstream 32820 4048776 ~ 4050680 (-)
G14517 NA non-coding upstream 78403 4094359 ~ 4102322 (-)
G14521 NA non-coding upstream 105397 4121353 ~ 4121664 (-)
G14524 NA non-coding upstream 114068 4130024 ~ 4133142 (-)
G14526 NA non-coding upstream 131744 4147700 ~ 4148078 (-)
G14426 il1rap,LOC106536183,LOC107379882,LOC108229411,LOC106536182 other downstream 176821 3472937 ~ 3722632 (-)
LOC120570817 NA other downstream 670629 3056729 ~ 3228824 (-)
G13995 iws1 other downstream 914955 2981061 ~ 2984498 (-)
G13651 NA other downstream 2517732 1302896 ~ 1381721 (-)
LOC120571038 NA other downstream 2701710 1166598 ~ 1197743 (-)
LOC120571085 mb21d2 other upstream 12784 4028740 ~ 4055084 (-)
G14552 LOC102792843,LOC102297898 other upstream 510118 4526074 ~ 5193378 (-)
G14579 NA other upstream 1047032 5062988 ~ 5111979 (-)
G14553 LOC108250350,LOC108250351,LOC108241855,LOC108249964,LOC107380983,LOC108242154,LOC108242155 other upstream 1143374 5159330 ~ 5350376 (-)
LOC120554300 cldn1,LOC103361214 other upstream 1473300 5489256 ~ 5510035 (-)

Expression


Co-expression Network