LOC120549106


Basic Information

Item Value
gene id LOC120549106
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5674449 ~ 5680774 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU19798
AACACATATACTCCAAGATGGCGGCATGTATGGTCtgatgtgtgtttgtcctcTTACCTATACTCATTTGATTGCCTTTATGCTCATATATGGAGTAACAATTTTAGCAGATTCTATGATTGAGCTCTTTGGTTTTTAgatgaaataattttttattgGATTATGGACTACTTTGCTGCAGAAAAGCTTCCATCTCCAGGCTCTACTTGAATCCTGAGGCCCTGTTAGCCTATAGGCCCTAGCAGTCCAGCTACCATCTCTAGGCTCCAGGCCCTAGCAGCCCAGCTACCATCTCCAGGCTCTGCTTGAATACTGAGGCCTTCCTAGCCTCTCCAGACCCTAGCAGCCCAGCTTCCATCTCCAGGCTCTACTTGGATATTGAGGACCTGTTAGCCTCTCCAGGCCTTAGCAGCCCAGCTACCATCTCTAGGCTCCAGGCCCTAGCAGCCTAGCTACCATCTTCCTTCTCTAACCCAGCTCCAGCCCAGCTATCATCTCTAGGCTCCAGGCCCTAGCAGCCCAGTTTCCATCTTCAGGCTTTATTTGGATCCAGAGGCTTTGTTAGCCTCTCCAGGCCCTAGCAGCCCAGCTACCATTGCTAGGCTCCAGGCCCTAGCAGCCCAGCTACGTGGATCCTGAGAATCTAAGATCAAGTGATTTATACTGGGGAATCCCACCGAGCCTTTTAGACCTTTAGTTCCGGGAAAACCAACGTCTCCCGGCAGGAAGTCTGagccaaagaagaaaaaacagtcGGTCAGAAAAACAGACGGACTTGGACATGTTGGAAGGAACTTCCAGGTACTTCCAGGACCTGGACCACAAACTGTCCATCACCTGGTATTCCTGGTTCTCCGGGTTCTCCGTCGACTCCAAAACCTCCCGGGACTCCATCCTGTCCTGGGGACCCGACGATGTCTGGCCCCGGCTCTCCCATTTCTCCTCTGCTTCCAGTCGAGCCAGGCGGCCCCTGGGGGCCCGGTGGACCAGTGGGAGCCACACCTCATGGGAAGAAGAACAGGCTTGTTTGCATGTGTAACATGTTACAAAACACTTGCGCTTAATAAAATGATTAGAATCAAAACCTCCCAGACAGCATGAGAGCCAGGGCAGCAGCCCCACTTTGTTATCACCAGAGGTGAGCAGTGATTGGTCGATAaggaatatatctttaaatacaaacaatttttcgaaacaacaacaaagttcAAGttgcaagctacacgctgaaaatggcaagtttagaAGAATATTTGGACGGACCtgtcttctgtactatctttgattgaactcgcacatgcgcagtagctcagatgtagatcatgtcagctagctccatagacagtaaaagaaaggctgtttctccaacttcggtcagttacaaggcaggtttagctgggagacttcgaAACAGACCTGCTttgttctttcagggaatgattgtaaagatttataaagaatatgttaagGTAATTTCTTCTCTAACTGTGACATTTTGGGaatgattggtgggattgctgtgtacgtacacatgttccaccaaaacaagttccttcctgagaccatttagcagaggcaccgtggctccgtccggagcttagcgccgaccaagatgattgtgattggtttaaagaaatgccaatacaccagagcacgtttttcgcccatcccagaatgctgtgtggaatagccagaccttcctacgcagcgctgtggaggaaggtctggcaatgcaagactacatcTGGCTAAATACAGTCTGATCTTATGATTGATTGTTATCTGATCATTAACCCATAATTGACAGTAAGTGTGAGAAAGATAGGAGTGGTACCTGGCACGCCCTTCATTCCAGGAAAGCCA
>XR_005637329.1
TACTCCAAGATGGCGGCATGTATGGTCtgatgtgtgtttgtcctcTTACCTATACTCATTTGATTGCCTTTATGCTCATATATGGAGTAACAATTTTAGCAGATTCTATGATTGAGCTCTTTGGTTTTTAgatgaaataattttttattgGATTATGGACTACTTTGCTGCAGAAAAGCTTCCATCTCCAGGCTCTACTTGAATCCTGAGGCCCTGTTAGCCTATAGGCCCTAGCAGTCCAGCTACCATCTCTAGGCTCCAGGCCCTAGCAGCCCAGCTACCATCTCTAGGCTCCAGGCCCTAGCAGCCCAGCTACCATCTCCAGGCTCTGCTTGAATACTGAGGCCTTCCTAGCCTCTCCAGACCCTAGCAGCCCAGCTTCCATCTCCAGGCTCTACTTGGATATTGAGGACCTGTTAGCCTCTCCAGGCCTTAGCAGCCCAGCTACCATCTCTAGGCTCCAGGCCCTAGCAGCCTAGCTACCATCTTCCTTCTCTAACCCAGCTCCAGCCCAGCTATCATCTCTAGGCTCCAGGCCCTAGCAGCCCAGTTTCCATCTTCAGGCTTTATTTGGATCCAGAGGCTTTGTTAGCCTCTCCAGGCCCTAGCAGCCCAGCTACCATTGCTAGGCTCCAGGCCCTAGCAGCCCAGCTACGTGGATCCTGAGGTCCTGTCAGCTACTCCTGGTTTTGCTAACATCTTCTGCTAACATGGCTCTTCTCTTAATGCTGCTTTGTTCATTGTTTGTGCAGAATCTAAGATCAAGTGATTTATACTGGGGAATCCCACCGAGCCTTTTAGACCTTTAGTTCCGGGAAAACCAACGTCTCCCGGCAGGAAGTCTGagccaaagaagaaaaaacagtcGGTCAGAAAAACAGACGGACTTGGACATGTTGGAAGGAACTTCCAGGTACTTCCAGGACCTGGACCACAAACTGTCCATCACCTGGTATTCCTGGTTCTCCGGGTTCTCCGTCGACTCCAAAACCTCCCGGGACTCCATCCTGTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19798 True 1863 lncRNA 0.48 5 5674449 5680774
XR_005637329.1 False 1014 lncRNA 0.50 3 5675410 5680766

Neighbor

gene id symbol gene type direction distance location
LOC120553850 LOC102792301,LOC101471225,LOC102195026,LOC103361203,LOC106536115 coding downstream 138963 5515659 ~ 5535486 (-)
LOC120544977 NA coding downstream 190301 5476980 ~ 5484148 (-)
LOC120548458 NA coding downstream 201862 5465950 ~ 5472587 (-)
LOC120570786 NA coding downstream 347691 5301805 ~ 5326758 (-)
LOC120544953 NA coding downstream 407154 5252994 ~ 5267295 (-)
LOC120571926 NA coding upstream 81420 5762194 ~ 5771638 (-)
LOC120544982 NA coding upstream 92989 5773763 ~ 5774605 (-)
LOC120544991 NA coding upstream 104364 5785138 ~ 5786067 (-)
LOC120545000 NA coding upstream 111244 5792018 ~ 5792947 (-)
LOC120572476 NA coding upstream 150403 5831177 ~ 5832109 (-)
G14746 NA non-coding downstream 176 5633508 ~ 5674273 (-)
G14747 NA non-coding downstream 38918 5634505 ~ 5635531 (-)
G14723 NA non-coding downstream 123575 5548954 ~ 5550874 (-)
G14735 NA non-coding downstream 197058 5472733 ~ 5477391 (-)
G14714 NA non-coding downstream 212183 5416056 ~ 5462266 (-)
G14762 NA non-coding upstream 40465 5721239 ~ 5721775 (-)
G14816 NA non-coding upstream 346096 6026870 ~ 6030460 (-)
G14820 NA non-coding upstream 356426 6037200 ~ 6038733 (-)
G14821 NA non-coding upstream 401719 6082493 ~ 6167461 (-)
G14832 NA non-coding upstream 540581 6221355 ~ 6222054 (-)
col4a4 LOC104946957 other downstream 35249 5555474 ~ 5639200 (-)
G14722 NA other downstream 140622 5510521 ~ 5533827 (-)
LOC120554300 cldn1,LOC103361214 other downstream 164414 5489256 ~ 5510035 (-)
G14553 LOC108250350,LOC108250351,LOC108241855,LOC108249964,LOC107380983,LOC108242154,LOC108242155 other downstream 324073 5159330 ~ 5350376 (-)
G14552 LOC102792843,LOC102297898 other downstream 481071 4526074 ~ 5193378 (-)
G14754 NA other upstream 22613 5703387 ~ 5705977 (-)
G14853 NA other upstream 621575 6302349 ~ 6302812 (-)
pgm2l1 pgm2l1 other upstream 678469 6359243 ~ 6380456 (-)
arrb1 arrb1,LOC102797194,LOC100705119 other upstream 1260481 6941255 ~ 6967985 (-)
atg16l2 NA other upstream 1340196 7020970 ~ 7032540 (-)

Expression


Co-expression Network