G14863 (lipt2)


Basic Information

Item Value
gene id G14863
gene name lipt2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6381723 ~ 6388400 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU19947
atatatatatatatatatatatatatatattacaacaaatattgatatttgaattataaaaaaggaaaagaagaactggttggttttacaaaaacaacaacggggaaaAGCAAACATCACACCCGGGAAACTATCTCCGGTGGTTTTCCCTCAGACGCACATTCTTGACAAAcattcttcctcctcctgttgcTATTGGGAAAGTGtgcggagtcaaacgtttagctccacccacGCTGAGCcactgcgtactgcagtcagggcttCCTCTCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGATGTCCGGTTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGCTGTCCGGCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGCTGTCCGGTTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCTGCTGTCCGGCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGAACCCCCGCTGTCCGGTTCAGTTTGCGCATCTGTTAGCCGACAGTCGAAGCGTTCCCCGAAGGCGTCCAGCAGGTGAGGGATGGCTTCCTCCACGCTGACGTCTCTCTGCAGCTCGGCGCTCAGCGACGTCACTCCTTTCCCCTCGATGCCGCACGGCACGATGTGACCGAACCACGACATGTCGGTGTTACAGTTCAGAGCCAGGCCGTGAGACGTGATGTAGCGCCCGCAGTGGATtcctacagacacacaacattcATACGACGAGATGTTTGATCCTGAGGGATCCTAACGTAGACCGACTGTACTAAATAAACTAATGATGCAGAAAgtaagggccgttacagagtcaacgcgagcaacgcgaacaagcaacgcgctccctttcatagtctaaacagcAGACGCAGAAGACGC
>TU19951
AGTTTGTTATAAAGTCAGTTTCTACGCTGATGATCCCCCGCTGTCCGGCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGCTGTCCGGTTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGCTGTCCGGCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGAACCCCCGCTGTCCGGTTCAGTTTGCGCATCTGTTAGCCGACAGTCGAAGCGTTCCCCGAAGGCGTCCAGCAGGTGAGGGATGGCTTCCTCCACGCTGACGTCTCTCTGCAGCTCGGCGCTCAGCGACGTCACTCCTTTCCCCTCGATGCCGCACGGCACGATGTGACCGAACCACGACATGTCGGTGTTACAGTTCAGAGCCAGGCCGTGAGACGTGATGTAGCGCCCGCAGTGGATtcctacagacacacaacattcATACGACGAGATGTTTGATCCTGAGGGATCCTAACGTAGACCGACTGTACTAAATAAACTAATGATGCAGAAAgtaagggccgttacagagtcaacgcgagcaacgcgaacaagcaacgcgctccctttcatagtctaaacagcAGACGCAACAAGACGCAACAAGACGCAAGCGTCGCGggcgatgcgtgaaatgcaatacaccgcccacgcAACAGGGGGCAGCAGAGCGCTCCACGGTGCTCGGTCagcagagccagaccctcccggagagAGTGGCTGACTTCTGTTTATCAGATGCTGgcgtgtttccccaccagtacagtgTGCTACGATTGGCTAGTACTGACCAATACATTGATCAAAGGTCGCGTAAACATgtggaccacaatggaaataagtctgtGGGCTTTATTGTGTCATCCCTAACTATTTAGGTATTTTTAATGTATGACACAGAGTgctgtttcatatttttttttatatttaag

Function

symbol description
lipt2 Predicted to enable ligase activity; lipoyl(octanoyl) transferase activity; and octanoyl transferase activity (acting on glycine-cleavage complex H protein). Predicted to be involved in positive regulation of oxygen metabolic process and protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT2 (lipoyl(octanoyl) transferase 2).

NR:

description
PREDICTED: putative lipoyltransferase 2, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19947 False 928 lncRNA 0.61 2 6386928 6388029
TU19951 True 935 lncRNA 0.45 4 6381723 6388400

Neighbor

gene id symbol gene type direction distance location
LOC120549609 NA coding upstream 28722 6350475 ~ 6353001 (+)
LOC120545249 NA coding upstream 57313 6323484 ~ 6324410 (+)
LOC120545240 NA coding upstream 90745 6290058 ~ 6290978 (+)
LOC120545220 NA coding upstream 207213 6169219 ~ 6174510 (+)
LOC120545214 NA coding upstream 217347 6161446 ~ 6164376 (+)
abcg1 abcg1,LOC103475277,LOC103152983,LOC102205798 coding downstream 32113 6420513 ~ 6448328 (+)
LOC120545383 NA coding downstream 122345 6510745 ~ 6520784 (+)
LOC120572075 NA coding downstream 123777 6512177 ~ 6516516 (+)
LOC120552698 NA coding downstream 136808 6525208 ~ 6526163 (+)
LOC120572775 NA coding downstream 146069 6534469 ~ 6535401 (+)
G14841 NA non-coding upstream 120501 6260871 ~ 6261222 (+)
G14807 NA non-coding upstream 191214 6164445 ~ 6190509 (+)
G14792 NA non-coding upstream 378809 6002208 ~ 6002914 (+)
G14788 NA non-coding upstream 461037 5919899 ~ 5920686 (+)
G14782 NA non-coding upstream 555043 5826342 ~ 5826680 (+)
G14901 NA non-coding downstream 69724 6458124 ~ 6458818 (+)
G14902 NA non-coding downstream 70542 6458942 ~ 6463821 (+)
G14904 NA non-coding downstream 77108 6465508 ~ 6466255 (+)
G14907 NA non-coding downstream 85110 6473510 ~ 6473769 (+)
G14908 NA non-coding downstream 88274 6476674 ~ 6477146 (+)
G14344 NA other upstream 853104 5510757 ~ 5528619 (+)
G14187 LOC107380983,LOC108250349,LOC108250351,LOC103477369,LOC103473932,LOC107835021,LOC106936810,LOC102294474,LOC102776571,LOC108229490,LOC103360213,LOC107834023,LOC103368570,LOC102214284,LOC102800009,LOC101480046,LOC101470105,LOC102792843 other upstream 964588 4801340 ~ 5417135 (+)
G14209 LOC102792843 other upstream 1854346 4500173 ~ 4527377 (+)
LOC120570718 LOC103473932 other upstream 1931893 4363666 ~ 4449830 (+)
rnf169 NA other downstream 4662 6393062 ~ 6404425 (+)
spcs2 spcs2 other downstream 19585 6407985 ~ 6417509 (+)
G15019 NA other downstream 584445 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 1009701 7398101 ~ 7399141 (+)
G15234 NA other downstream 1102965 7491365 ~ 7492057 (+)

Expression


Co-expression Network