pgm2l1 (pgm2l1)


Basic Information

Item Value
gene id pgm2l1
gene name pgm2l1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6359243 ~ 6380456 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU19967
CTTCACTCTCCAGAACGGCATCGTGGCAACGCTGAGAACCAGCGGCACAGAACCCAAAATCAAATACTACACTGAGTACTGCGCCGCTCCGGGGAACAGCGAGGCGTCCCGCCTGGAGGAGGAGTTAGGGAAGATCACCACCGCCCTGCTGGACGAGTTCCTGGAGCCTGAGAGGAACAACCTGATTCGCCGCCGCGTCTAGCTCCGCCCCCTCCCACACCTGGTCGCCCCCCCG
>XM_039788155.1
GCGGGACATTCCTTCGCCGTCCTAGGAAACGCAGTTTCGCCCTAGGACTTGACAGCGGTGTTTATGAAGTTAATATTTCCGTTATGTCGAGCTTTACCGAGGGATATAATAGTCtccgttagcatttagctgcaATCCGTCTCCATCTCCCGTGGTGTAACTTTAGCGTGTTGCTAAAATTAGCTAGCATGTTAGCTAGTCTGCCTCTGTCAGTGAGCATGGGAGACAATAACGGAGTGAACGGGGATTTGAACGCCAACTTAAGGTGCCAGAGTACCGGCGACCCGCAGCTGGACAAGGCGGTGGACCAATGGTTGACCTGGGACAAGAACCGGCGGACTCGGGCGCAGGTGGAGGCTCTGGTGGCGGCTGGACGCCGGGAGGACTTGAGGACGAGACTCTGCAGCAGGATGAGCTTCGGCACGGCAGGACTCAGGGCGCCTATGGGAGCCGGATTCAACCGGATCAACGACCTCACCGTCATCCAATCAACACAGgggTTATACTCCTACCTGAGCAGGTATTTCCCAGACTTCAGCAGCAGAGGAGTGGTTCTTGGTTTTGACACCAGAGGACAGGAGGAGAGCGGCTGCAGCAGTCAGAggTTGGCGAAGTTGGCGGCTGCGGTGATGCTCAGCAGAGACGTTCCTGTTCATCTCTTCTCCACGTTTGTCCCGACGCCGTACGTGCCGTACGCTGTGAAGAAGCTCGGTGCTGCAGCCGGAGTGATGATCACAGCCTCGCACAATCCTAAAGAAGACAACGGATACAAGGTGTACTGGTGTAACGGCGCTCAGATCTCCTCGCCTCACGACAAGGAGATCCTGCAGAGTATCGAGGAGCAGCTGGAGCCCTGGAGCGCCTCCTGCTGGGAGGAGGAGCTGGTGGAGCGCTGCTCCCTGAGGACCGACCCCCTGACCCAGATCAACAGCTGCTACATGGACGAGCTGACCTCGCTCTGCTTCCACAGGGATCAGAACAGAAGCTGTCCGTTGAAGTTTGTCCACTCATCGTTCCACGGCGTCGGACACGCCTTCGTCCAGCAGGCCTTCCACGCCTTTGGCTTCGCTCCGCCCATCCCCGTCCCCGAGCAGAAAGACCCCGACCCCAACTTCTCGTCCGTCCGCTGCCCCAACCCCGAGGAGGGAGAGTCGGTCCTGGAGCTCTCTCTTCTTCTGGCTGAGCGGGAAAATGCTTGCATCGTCCTGGCGACAGATCCTGATGCCGATCGATTGGCTGTCGCAGAGAAGTCTGACGGGTGCGGTTGGAAGGTGTTCACGGGTAACGAGCTGGCCGCCCTGTTGGGTTGGTGGATGTTCTTTAATTGGAAGGAGGCTCATCCCGTTCCTGCCGACACTCAGAAGGTTTACATGTTGGCCACCACGGTTTCCTCCAAGATCCTGCAGGCCTTCGCTCGCATCGAGGGCTTCCACTACGAGGAAACTCTTCCTGGGTTTAAGTGGATCGGGAACAGAATACACGAACTCTCCAAAACAGGAAACAGCGTCATCTTTGCCTTCGAGGAGTCGATTGGTTTCCTGTGTGGCAGCATGGTTCCGGAGAAAGATGGCGTGAGTTCGGCGGTGGTTGTGGCTGAGATGGCTGCTTACCTCCACAACAAGAAGCTGAGTCTGAAGCAACAGCTGCACAACATCTACCAGACGTATGGTCATCACGTGTCCAAAACGTCGTACGTCATCTGTAACGACCCGCCCACCATCCAGAAGATCTTCAGCCGGATCCGAAACTTTGACGGCGATGCTTCGTACCCGAAGACGTGCGGCGGCGTCCGGATCGTCCACATCAGAGACGTTACCACGGGATACGACAGCAGCCAGCCCGACTGCAGATCGGTAAGAAAACCGTTTGATTCATCgattgttctTAACGTAACTGTTCATCTTCACTTCACTCTCCAGAACGGCATCGTGGCAACGCTGAGAACCAGCGGCACAGAACCCAAAATCAAATACTACACTGAGTACTGCGCCGCTCCGGGGAACAGCGAGGCGTCCCGCCTGGAGGAGGAGTTAGGGAAGATCACCACCGCCCTGCTGGACGAGTTCCTGGAGCCTGAGAGGAACAACCTGATTCGCCGCCGCGTCTAGCTCCGCCCCCTCCCACACCTGGTCGCCCCCCCGCCACTGCTTCTCTCTGTGGTATCCATAAAGTTCAGTTGAGACTAAAATATAAACTGattcattaaaaaataataaatatttagttGAACTTTGGTCCTTCATAAAGCAGAGAGCATGATGGGTAAACTGCAGTGtccagttttattttgatttgagTTTGTGAAACCAAATATTGCTGTCTGAACTGTAAAgacttgaaataaatatatacatatggaAGTTTAATAACGACAAAACAAATTCGTTGAAACTATATAATTAACTATGTTTAtcacaaaccaaaaataaactTTTGTTACAACCTATCACGTTATTTTGGCACATCATGAAACTCTCATTACACAAAATGAACGTGTGATAAAgttattaccacgagtttacataCACGTCGCTGCTGATTGGTTAAAATATCTGACACACCCATGAAATCAGAGGAAACGTACGTCAAAGCTTGTTGTGCACCGTTTCACACTGTTCTGAGGAAACGTCATTCAACCCGGAAACTGACGCAAAACGATGCACACagttttgagattgaacgtgcccgTTTCTCTAATGTCCCCACAGTAAACTAAATCTCTTTTGGTAAATTGGACAAAACGTGACATTCAAAGACATCACTTTGGACTCTGAGAACGGTTAGTCAATAGTTTTGTCATTAATAAACTTCcgtaaatacatataaaaaggGGGGGGGTATGTCTCCTTAAGAGAGCAGAAAATCAGCTGCTtatctttttctgtctttgtagtttttttttgttaatctgAATGTTAAAGTTTCTCCTTCGAACTCTGCGATGTTACCTATTTTTTTACTCAgagataaaatatatttatgtgACAGTTCATGTTGTGTTGTATGATCTGGTTTTGTAGTTTggacagagtgagacctctgcTTGTGTTTAGATTGTCGCAGCTTTAAGTTAATGTGGTTCTCTGGCGATCCAccaataaaacataataaaactgTAA

Function

symbol description
pgm2l1 Predicted to enable intramolecular transferase activity, phosphotransferases and metal ion binding activity. Predicted to act upstream of or within glucose metabolic process. Orthologous to human PGM2L1 (phosphoglucomutase 2 like 1).

NR:

description
glucose 1,6-bisphosphate synthase-like isoform X1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K11809 PGM2L1; glucose-1,6-bisphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
TU19967 False 235 lncRNA 0.53 2 6360221 6361732
XM_039788155.1 True 3119 mRNA 0.50 14 6359243 6380456

Neighbor

gene id symbol gene type direction distance location
LOC120545232 NA coding downstream 82398 6275892 ~ 6276845 (-)
LOC120545072 NA coding downstream 387327 5970990 ~ 5971916 (-)
LOC120545063 NA coding downstream 395373 5962920 ~ 5963870 (-)
LOC120545043 NA coding downstream 410380 5939672 ~ 5948863 (-)
LOC120545036 NA coding downstream 440233 5918054 ~ 5919010 (-)
lipt2 lipt2 coding upstream 7034 6387490 ~ 6393224 (-)
LOC120553580 NA coding upstream 61316 6441772 ~ 6442698 (-)
LOC120545295 NA coding upstream 86392 6466848 ~ 6467780 (-)
LOC120545304 NA coding upstream 102535 6482991 ~ 6484025 (-)
LOC120545387 NA coding upstream 165635 6546091 ~ 6547017 (-)
G14846 NA non-coding downstream 46179 6260858 ~ 6313064 (-)
G14840 NA non-coding downstream 108818 6249908 ~ 6250425 (-)
G14835 NA non-coding downstream 109421 6246107 ~ 6249822 (-)
G14833 NA non-coding downstream 134871 6223978 ~ 6224372 (-)
G14832 NA non-coding downstream 137189 6221355 ~ 6222054 (-)
G14882 rnf169 non-coding upstream 9716 6390172 ~ 6403336 (-)
G14890 NA non-coding upstream 23401 6403857 ~ 6418886 (-)
G14923 NA non-coding upstream 76942 6457398 ~ 6457867 (-)
G14925 NA non-coding upstream 96318 6476774 ~ 6477418 (-)
G14937 NA non-coding upstream 186081 6566537 ~ 6566808 (-)
G14853 NA other downstream 56431 6302349 ~ 6302812 (-)
G14754 NA other downstream 653266 5703387 ~ 5705977 (-)
col4a4 LOC104946957 other downstream 720043 5555474 ~ 5639200 (-)
G14722 NA other downstream 825416 5510521 ~ 5533827 (-)
LOC120554300 cldn1,LOC103361214 other downstream 849208 5489256 ~ 5510035 (-)
arrb1 arrb1,LOC102797194,LOC100705119 other upstream 560799 6941255 ~ 6967985 (-)
atg16l2 NA other upstream 640514 7020970 ~ 7032540 (-)
G15110 NA other upstream 721910 7102366 ~ 7104090 (-)
G15114 abcc5 other upstream 731243 7111699 ~ 7113608 (-)
LOC120543742 abcc5 other upstream 734263 7114719 ~ 7126398 (-)

Expression


Co-expression Network