arrb1 (arrb1,LOC102797194,LOC100705119)


Basic Information

Item Value
gene id arrb1
gene name arrb1,LOC102797194,LOC100705119
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6941255 ~ 6967985 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU20261
gttttttttgccttGTTCAACGTTTTTGACTATTTGTACATAGTTTTTTTCACGTTATGAAAAAAGTAtgcttttttcagcattttatgcaacatttttgttgctttttgggcgtttttgacattttattcttCGTTTTTGTTATCTATTACCTTTTCTTTACTCATGTGGACTGCCGGTGCACCTAGCATTTGTCTATATATATTATGACTATCCTGCCTATACCACGGGTCGGCCCTGCTGTACATCGAATGGTTTGTTTTTCAGCGACGTCTCTGTCGAGCTGCCGTTCACGTTGATGCACCCAAAGCCGCTGGAAGAATCCTTCTACAGAGACGCTCCAGATGAAGCTCCAATCGACACAAACCTGATCCAGTTTGACACAAAcgACGATGACATCATCTTTGAAGACTTCGCCCGCCAGCGGCTGACAGGCGGAGCGCAGGACGACAAGGACGAAGACGAGGAGCCGGTGGACTCGCCCAAACTCGATGACAGATAAAACCGTTGAGCGCTGCTGCCGTGGCCGTCGCTGCTGCGGAGGTTCCGGACACTTTTCAACACTCGGCGGTGCCGTGTTTGTGTTCTCGTTCATGTTCGTCCTCTGCGTCCTGCCGGGGTGTAAAAAGCTAGAATACCGCACGGAGCAGCTCTCCACTCCTTCGCCCGCGCGCCGGAGACTTGAACCGGCGATCGCGGACGTCGTAATGACGGCTGGTAGCATGCCTCTAATGTCACTTTGTTGTACGTGTTTCCATTAGGGACCGAGCAGGAGTAACGTTGTGTTGAGATTAGTTTCGATGTGTCAATCAGAGGGTCTTTATAAACAACAACACCGGAACAGTTCAGCGTTCGAGGCCGCAGCGTGGACGCCGGCTGACCGAGATCTTTGTTCACGGTCAGTCTGTGCGAAGAcaaagaagacagagagagccaCCAATCAGCTGAGAGCAACTGGTGGCCCCGTTTGCATGAAATCCATCTTTATATGCTTTATTACTGTCATGGATTATCAACCTTTGTAGAGAAACGGCTGTGATTTTAAAGAACCACACTAGCgttggtttttgttttgttttgtgaggATTGAACTCCGCTGCTGGTTTCACCTCACTTCTGTAAAAATCTGCTTTCAGAGACGACAAAGTTCAGCCTCTATGCTTTCTGATGAGATGTGTGCACAAACCTCAAATCATGTCTCAATCAAACATTTTAGACAAAGTTCAAAACATTATTATGTATATTTCTCAAAGTCAGGATTCTACACAAAAGGAAGCATCCAACCAGGATGttacacaatacttttaaaTGCCTACAAGCTGATCAGCTAAACCCAATGACATAGCAGCCAAAGTCCAACAACAAAGCTAGCCATACGCAGACCCGCTCACCTTTTGAAAAGCTTAAACATTAGGCCCCACTCGCGCCCAATTACCACGGTGCCAGAAAACACTACAACACCTAATTAACACATGCGACGCAGCGGCCCAAAGACGTGCCACAAAAACACCACGACGCCTGATTAAAACAAACCTGAATAGCACACGCAAACGTTCATATCTCGGATGATAGCTCCCACTTGTTACAAAGCTAAATAACACAAGCCAACGTTCCAATGTCGCTGGTttgccccccccaccaccatccCCTCTAAAACGACCCATAGGAGTGTTTCCTAAattagcgccccctagtggtggcaggaaatacgtcctcatatctaaaccagagaagttTAAActgtcccagtttggttaggtttaggcaccaaaactactgagttaaagcgtaactctcgccaaaatgcaagctagtgtctttttgtgaatgtacccgagtcaaagtttcatttaaaagcataattaggacggaaacgccacttttacgATTGCCCGTATTCTcgttttgggtcaaatggccttttaaaTGGGAGAGCCAGGGGAactactatgatagcatcaaaattactatttttaaaacactaagaaggctcgacacaacatgagactttgctccaagtatgaccaggggctctacacgtGAActcagcattgacaacattgtgttcacagagtttactaaaaaaaaggttttgaatgACTCACTTTAGCTGTTGGTTTTTCCGCTCGCCGCCATCTTGTCAGTCAAAAAgtgtcgatctccgaatgcgaatgaacgcATCTATTGATTTCAGTATTGtttcttatatgaggctcctttttcaactacaaggtcaatattgtttttcactaatgCCAAACAACAAATGATCCGTggatttatatggaactaagctttaggagctttccatctttaatctcctccctgttacgtactatcacaaaaagaccctaggttgcattttggcgagagttacgctttaagtttccttttcttttcagacgggacatgaacccccggtctcctgggtgaaagtcctgtgtttgttcgGAGGCTAgggtcttggcatggccatagtaggattcgtaaATTCGCTACCTGgacatttggcgctcttatactccctcaccttacttcctgctttgctcccgtcagaactactacgaccactagaggggaCCGCCACTAGAAacataaatataggtcagaatgatgctgcAACAAACTTATGGGGGAGTATTTCGGAGGAGACTAGTCTCTCTTTACTACAAGAGCGTCCTTGGTTCAACGTTCCAACAGTAAAACATTGAGTCAGTCCAAAACTGATGGatgattcagaaaatgacaaggtgatgtaaacaggaagcattGATGTGTATGGCCCTTTAATGAACATTTTATTCAAGTGAGACTTGATGAGATGAAAACAGCGTGTGATTACGGAACtttaatttaacattcaaaGTAAAACAGGGACTTAAACATGTGAACctttgttactgtgtgtgtgtgtgtgtgtgtgtgactgtgtcggtgtgtgtgtctgtgtctgtgtgtgtgacactgaaACATTACAGGATAAAAAGATTTTAAAGACACCCAAAAACATCTTTATTATTTCTAATATTATTTGaatgggcttttattttgacagggcCAGAAGGAAACCTATATATTCCTCtgcatatttaataaaaaataagtttgtggc
>XM_039777112.1
gagagagagagagagagagagagagagagagagagagagaatagaagggagagagagagagagagagaagagagagatatCCTCCCCTCAGTTTCCACGGTGACGGCATCCCTGCTCCACCATCTCTCCGTCCATCCGGCTGCTCAGCGTCTCCAGGATGGGAGATAAAGGAACACGAGTGTTTAAGAAAGCCAGTCCCAATGGAAAGCTTACTGTCTATTTGGGGAAGAGAGACTTTGTGGACCACGTGGACCTGGTGGAGCCCGTCGACGGCGTCGTCCTGATTGACCCCGAGTACCTGAAGGAGAGGAAAGTGTTTGTGACTCTGACGTGTGCGTTTCGGTACGGCCGCGAGGATCTGGACGTCCTGGGTTTGACGTTTCGTAAAGATCTGTTTGTGGCGAACGTGCAGGCGTTTCCTCCGCCGGCCGAAGAGAAGAAGAGTCTGACTCGTCTGCAGGAACGACTGATCAAAAAACTGGGAGAACATGCCCACCCGTTCACCTTCCAGatTCCTCTGAACCTGCCGTGCTCCGTCACCCTGCAGCCGGGCCCCGAGGACACCGGGAAGGCCTGCGGAGTCGACTTCGAGGTGAAAGCTTTCTGTGCAGAAAACGTTGAAGAAAAGATCCATAAAAGGAACTCGGTGCGTCTGGTGATCCGAAAGGTGCAGTATGCTCCGGAGAAACCCGGTCCTCAGCCAACGGCAGAAACCACCAGACAGTTCCTGATGTCGGACAAACCTCTGCACCTGGAGGCCTCTCTGGACAAAGAGaTTTATTACCACGGGGAGCCGATCAGCGTTAACGTCCAcgtcaccaacaacaccaacaaGACCGTGAAGAAGATGAAGATCTCAGTGCGACAGCACGCAGACATCTGCCTGTTCAACACGGCGCAGTACAAATGTCCGGTGGCCACCGAGGAGTCAGAtgacgTTGTCGCTCCCAGTTCGACTTTCTGCAAGGTTTTTACTCTCACTCCGTTTCTGGCAAACAACCGAGAGAAACGAGGCCTCGCTCTAGACGGAAAACTGAAGCACGAGGACACCAACTTGGCCTCCAGCACACTGTTAAGAGAAGGAGCCAATAAGGAGATCCTCGGTATCATAGTGTCGTACAAAGTCAAAGTGAAGCTGGTTGTGTCTCGAGGCGGGCTCCTGGGAGATCTGGCGGCGAGCGACGTCTCTGTCGAGCTGCCGTTCACGTTGATGCACCCAAAGCCGCTGGAAGAATCCTTCTACAGAGACGCTCCAGATGAAGCTCCAATCGACACAAACCTGATCCAGTTTGACACAAAcgACGATGACATCATCTTTGAAGACTTCGCCCGCCAGCGGCTGACAGGCGGAGCGCAGGACGACAAGGACGAAGACGAGGAGCCGGTGGACTCGCCCAAACTCGATGACAGATAAAACCGTTGAGCGCTGCTGCCGTGGCCGTCGCTGCTGCGGAGGTTCCGGACACTTTTCAACACTCGGCGGTGCCGTGTTTGTGTTCTCGTTCATGTTCGTCCTCTGCGTCCTGCCGGGGTGTAAAAAGCTAGAATACCGCACGGAGCAGCTCTCCACTCCTTCGCCCGCGCGCCGGAGACTTGAACCGGCGATCGCGGACGTCGTAATGACGGCTGGTAGCATGCCTCTAATGTCACTTTGTTGTACGTGTTTCCATTAGGGACCGAGCAGGAGTAACGTTGTGTTGAGATTAGTTTCGATGTGTCAATCAGAGGGTCTTTATAAACAACAACACCGGAACAGTTCAGCGTTCGAGGCCGCAGCGTGGACGCCGGCTGACCGAGATCTTTGTTCACGGTCAGTCTGTGCGAAGAcaaagaagacagagagagccaCCAATCAGCTGAGAGCAACTGGTGGCCCCGTTTGCATGAAATCCATCTTTATATGCTTTATTACTGTCATGGATTATCAACCTTTGTAGAGAAACGGCTGTGATTTTAAAGAACCACACTAGCgttggtttttgttttgttttgtgaggATTGAACTCCGCTGCTGGTTTCACCTCACTTCTGTAAAAATCTGCTTTCAGAGACGACAAAGTTCAGCCTCTATGCTTTCTGATGAGATGTGTGCACAAACCTCAAATCATGTCTCAATCAAACATTTTAGACAAAGTTCAAAACATTATTATGTATATTTCTCAAAGTCAGGATTCTACACAAAAGGAAGCATCCAACCAGGATGttacacaatacttttaaaTGCCTACAAGCTGATCAGCTAAACCCAATGACATAGCAGCCAAAGTCCAACAACAAAGCTAGCCATACGCAGACCCGCTCACCTTTTGAAAAGCTTAAACATTAGGCCCCACTCGCGCCCAATTACCACGGTGCCAGAAAACACTACAACACCTAATTAACACATGCGACGCAGCGGCCCAAAGACGTGCCACAAAAACACCACGACGCCTGATTAAAACAAACCTGAATAGCACACGCAAACGTTCATATCTCGGATGATAGCTCCCACTTGTTACAAAGCTAAATAACACAAGCCAACGTTCCAATGTCGCTGGTttgccccccccaccaccatccCCTCTAAAACGACCCATAGGAGTGTTTCCTAAattagcgccccctagtggtggcaggaaatacgtcctcatatctaaaccagagaagttTAAActgtcccagtttggttaggtttaggcaccaaaactactgagttaaagcgtaactctcgccaaaatgca

Function

symbol description
arrb1 Predicted to enable G protein-coupled receptor binding activity. Acts upstream of or within several processes, including endothelial to hematopoietic transition; regulation of microglial cell activation; and regulation of signal transduction. Predicted to be active in several cellular components, including cytoplasmic vesicle; cytosol; and nucleus. Is expressed in neural rod. Orthologous to human ARRB1 (arrestin beta 1).

NR:

description
PREDICTED: beta-arrestin-1 isoform X5

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process
GO:0048368 lateral mesoderm development biological_process
GO:0007165 signal transduction biological_process
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20261 True 3112 lncRNA 0.60 3 6941255 6945535
XM_039777112.1 False 2720 mRNA 0.51 16 6942559 6967985

Neighbor

gene id symbol gene type direction distance location
LOC120545524 NA coding downstream 56779 6882361 ~ 6884476 (-)
LOC120545509 NA coding downstream 119025 6820147 ~ 6822230 (-)
LOC120545506 LOC101478264,LOC104929709,LOC102796112 coding downstream 161151 6779175 ~ 6780104 (-)
LOC120545488 NA coding downstream 189274 6746180 ~ 6751981 (-)
LOC120545387 NA coding downstream 394238 6546091 ~ 6547017 (-)
wdr62 NA coding upstream 68137 7036122 ~ 7059696 (-)
LOC120554469 NA coding upstream 74097 7042082 ~ 7042373 (-)
LOC120544032 NA coding upstream 294989 7262974 ~ 7267714 (-)
LOC120543849 NA coding upstream 430208 7398193 ~ 7412507 (-)
polr2d polr2d coding upstream 527048 7495033 ~ 7509145 (-)
G15075 NA non-coding downstream 11680 6913733 ~ 6929575 (-)
LOC120549739 NA non-coding downstream 137634 6802892 ~ 6803621 (-)
G14949 NA non-coding downstream 234962 6705589 ~ 6706293 (-)
G14943 NA non-coding downstream 332043 6608957 ~ 6609212 (-)
G14940 NA non-coding downstream 362794 6578238 ~ 6578461 (-)
G15077 NA non-coding upstream 4839 6972824 ~ 6990543 (-)
G15083 NA non-coding upstream 28146 6996131 ~ 6997391 (-)
G15091 NA non-coding upstream 48311 7016296 ~ 7017402 (-)
G15086 NA non-coding upstream 66379 7034364 ~ 7034716 (-)
G15094 NA non-coding upstream 67088 7035073 ~ 7035526 (-)
pgm2l1 pgm2l1 other downstream 560799 6359243 ~ 6380456 (-)
G14853 NA other downstream 638443 6302349 ~ 6302812 (-)
G14754 NA other downstream 1235278 5703387 ~ 5705977 (-)
col4a4 LOC104946957 other downstream 1302055 5555474 ~ 5639200 (-)
G14722 NA other downstream 1407428 5510521 ~ 5533827 (-)
atg16l2 NA other upstream 52985 7020970 ~ 7032540 (-)
G15110 NA other upstream 134381 7102366 ~ 7104090 (-)
G15114 abcc5 other upstream 143714 7111699 ~ 7113608 (-)
LOC120543742 abcc5 other upstream 146734 7114719 ~ 7126398 (-)
rpl35a rpl35a other upstream 161641 7129626 ~ 7136162 (-)

Expression


Co-expression Network