G15162 (lrch3)


Basic Information

Item Value
gene id G15162
gene name lrch3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7354998 ~ 7356557 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU20388
cttgTCCCGTAACCGTCTGTCGGAGCTGCCTCTGGAGGTGTGTCTCTTCGTGTCTCTGGAGAGTCTGAACCTTTACCAGAACTGTCTCCGGTCTCTGCCGGACAGTCTGCTCAACCTGCAGGCTCTCACCTGTCTCTACctcagtcgtAACCAGCTGTCTGTCCTCCCGGTGGTGGTGTGCAGTCTTCCTCTGAAGGTTTTGATCGCCTGCAACAACAAACTGGTTTCTCTGCCAGAGGAGCTGGGCCAGCTGAGACACCTCACTGAGCTGGTCAGTAGATCACATGACCTATCACATGACCTATCACATGACCTACCTGT

Function

symbol description
lrch3 Predicted to be active in cytosol. Orthologous to human LRCH3 (leucine rich repeats and calponin homology domain containing 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat and calponin homology domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20388 True 321 lncRNA 0.39 2 7354998 7356557

Neighbor

gene id symbol gene type direction distance location
or55e1 LOC104939064 coding upstream 413564 6935046 ~ 6941434 (+)
LOC120543617 NA coding upstream 425413 6913684 ~ 6929585 (+)
LOC120545568 LOC102303044,LOC101479096 coding upstream 443508 6910543 ~ 6911490 (+)
LOC120545541 NA coding upstream 455416 6898638 ~ 6899582 (+)
LOC120545533 LOC101478539 coding upstream 460501 6893550 ~ 6894497 (+)
LOC120545619 abcf3 coding downstream 9239 7365796 ~ 7396634 (+)
trnal-cag NA coding downstream 55273 7411830 ~ 7411912 (+)
LOC120543955 NA coding downstream 74386 7430943 ~ 7440997 (+)
ece2b LOC103361209,LOC101485402 coding downstream 178542 7535099 ~ 7570718 (+)
ano7 ano7,LOC103361833,LOC108228741 coding downstream 217167 7573724 ~ 7603726 (+)
G15144 NA non-coding upstream 25779 7309629 ~ 7329219 (+)
G15155 NA non-coding upstream 31280 7323253 ~ 7323718 (+)
LOC120544121 NA non-coding upstream 76702 7277923 ~ 7278296 (+)
G15127 NA non-coding upstream 174946 7167378 ~ 7180052 (+)
G15124 NA non-coding upstream 197350 7157290 ~ 7157648 (+)
LOC120544109 NA non-coding downstream 26081 7382638 ~ 7388682 (+)
G15171 NA non-coding downstream 34856 7391413 ~ 7392310 (+)
G15174 NA non-coding downstream 44208 7400765 ~ 7402776 (+)
G15179 NA non-coding downstream 68883 7425440 ~ 7459538 (+)
G15236 NA non-coding downstream 138503 7495060 ~ 7541926 (+)
G15019 NA other upstream 365602 6972845 ~ 6989396 (+)
spcs2 spcs2 other upstream 937489 6407985 ~ 6417509 (+)
rnf169 NA other upstream 950573 6393062 ~ 6404425 (+)
G14344 NA other upstream 1826379 5510757 ~ 5528619 (+)
G14187 LOC107380983,LOC108250349,LOC108250351,LOC103477369,LOC103473932,LOC107835021,LOC106936810,LOC102294474,LOC102776571,LOC108229490,LOC103360213,LOC107834023,LOC103368570,LOC102214284,LOC102800009,LOC101480046,LOC101470105,LOC102792843 other upstream 1937863 4801340 ~ 5417135 (+)
G15173 LOC102077075 other downstream 41544 7398101 ~ 7399141 (+)
G15234 NA other downstream 134808 7491365 ~ 7492057 (+)
rffl rffl other downstream 450252 7806809 ~ 7853429 (+)
LOC120543808 NA other downstream 470053 7826610 ~ 7828087 (+)
LOC120543711 LOC102298536 other downstream 501496 7858053 ~ 7892473 (+)

Expression


Co-expression Network