LOC120543808


Basic Information

Item Value
gene id LOC120543808
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7826610 ~ 7828087 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU20573
gctgagtggtgtcagtgtttgtccacctcggagcagaatggctgcagtcacagagctctccttcctgctgtttgctctcatcaacaACATCCATGCACAAGAACAGGTCATCGTCAAACAGGAAGGAGACTCTTACACCTTCAACCTCCCCGAGAACACCaactcctgcctgatctccagatctgttggtgaggagaagcttgtcctgtggaacacctctgacctctggtccaacaaCCCCTCAGTACCTGAATACCTGAAACAACGACTTGTCAGGACAGCGGATacttcttcttacaccatcctcaacctgacccattcagactACGGCCGGTAccgagaggagtgttggactgagggcaacGTGACGCATGAAAACAACTttactattactgtttgtacttCAATAGACGAGAGATATGGGAGAGATATCAGAGTGAGACTTGGAGAAACAGTGGACGTGCCATGTGAGGGAGCAGCTGATAATCTGGATATCCAGTGGCTCAAACGGGACTATAGATATGAGCAACTTACATTGAGCAGAGTTTTTGGGGACAAGAcgacatcagtgatggacaatgttagaggaagatacca
>XM_039777073.1
cagaatggctgcagtcacagagctctccttcctgctgtttgctctcatcaacaACATCCATGCACAAGAACAGGTCATCGTCAAACAGGAAGGAGACTCTTACACCTTCAACCTCCCCGAGAACACCaactcctgcctgatctccagatctgttggtgaggagaagcttgtcctgtggaacacctctgacctctggtccaacaaCCCCTCAGTACCTGAATACCTGAAACAACGACTTGTCAGGACAGCGGATacttcttcttacaccatcctcaacctgacccattcagactACGGCCGGTAccgagaggagtgttggactgagggcaacGTGACGCATGAAAACAACTttactattactgtttgtacttCAATAGACGAGAGATATGGGAGAGATATCAGAGTGAGACTTGGAGAAACAGTGGACGTGCCATGTGAGGGAGCAGCTGATAATCTGGATATCCAGTGGCTCAAACGGGACTATAGATATGAGCAACTTACATTGAGCAGAGTTTTTGGGGACAAGAcgacatcagtgatggacaatgttagaggaagataccaagtggtgacaGACACATCAGCTCTTCATGTTTCCAACGTCACAGCAACAGACTTTACATGGTACACctgtctggtgatgaaccaacagcagtgtgttagcagtcaCACTGTATGGTTGAGACTACAGTTTGAGATGATCTACGGCTCAGTGGGAGAGACTGTTGTGTTGCCGTGCACTATCGctgactccactgatgaacAGCCCCCACGTTGGACCTCCACCGACCTAGGACAACTAAAGCAGACTGTTTCTTCAGTAGACCAAAAATACTCtctggtgttttcatctctaaaGTTACATCACTCAGGTTGGTACTCCTGTAAAGCCTCTTGGAGATATCAACAGTATCGTCTGTTTGTGTGCCCCAAATTTGCcccccctgctgtagagctctACTCAGTGGGAGAAGACATCACTCTCACATGCACAGATAGGGCAGAGGGTAGGGGGCATGTTTGGTTTATCAAGTCACACCGAATAGATGGAAGAATCTTTAATGTAAGCATGAGCAGGGTGAGCTGGTACAAAAGATATGGGAgcctggttatctctaatatctcagtgggagacgcaggggagtactggtgtgtaGTTTATACATTTGATGGTGAACAGTGTGTGTCAACAGAGAGGactgtgttagtgtacatggagccctttgggatttactccaccttcttcaaagtgcgatgctcagtgctcagtgtcctgctgctgatgctctgtgctgctgtagtcgctgtgaacctgaggacacGGAGAAGAGCTCAGCTtccagctcacacacacacttaat

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU20573 False 597 TUCP 0.54 2 7826610 7827290
XM_039777073.1 True 1361 mRNA 0.48 2 7826643 7828087

Neighbor

gene id symbol gene type direction distance location
LOC120543651 NA coding upstream 135538 7679029 ~ 7691072 (+)
eif4h eif4h,LOC102797691 coding upstream 161460 7642554 ~ 7665150 (+)
LOC120551040 NA coding upstream 186599 7612248 ~ 7640011 (+)
ano7 ano7,LOC103361833,LOC108228741 coding upstream 222884 7573724 ~ 7603726 (+)
ece2b LOC103361209,LOC101485402 coding upstream 255892 7535099 ~ 7570718 (+)
LOC120551067 NA coding downstream 287298 8115385 ~ 8118646 (+)
LOC120543907 NA coding downstream 295538 8123625 ~ 8125669 (+)
LOC120551081 NA coding downstream 416544 8244631 ~ 8307210 (+)
nyap2a LOC103360223 coding downstream 571313 8399400 ~ 8422336 (+)
LOC120543718 NA coding downstream 601138 8429225 ~ 8469760 (+)
G15262 NA non-coding upstream 25720 7779257 ~ 7800890 (+)
G15243 NA non-coding upstream 80619 7667142 ~ 7745991 (+)
G15236 NA non-coding upstream 284684 7495060 ~ 7541926 (+)
G15179 NA non-coding upstream 367072 7425440 ~ 7459538 (+)
G15174 NA non-coding upstream 423834 7400765 ~ 7402776 (+)
G15266 NA non-coding downstream 7088 7835175 ~ 7835918 (+)
G15273 NA non-coding downstream 11382 7839469 ~ 7839994 (+)
G15265 NA non-coding downstream 25440 7853527 ~ 7857191 (+)
G15275 NA non-coding downstream 44329 7872416 ~ 7900015 (+)
G15276 NA non-coding downstream 56975 7885062 ~ 7885695 (+)
G15234 NA other upstream 334553 7491365 ~ 7492057 (+)
G15173 LOC102077075 other upstream 427469 7398101 ~ 7399141 (+)
G15019 NA other upstream 837214 6972845 ~ 6989396 (+)
spcs2 spcs2 other upstream 1409101 6407985 ~ 6417509 (+)
rnf169 NA other upstream 1422185 6393062 ~ 6404425 (+)
LOC120543711 LOC102298536 other downstream 29966 7858053 ~ 7892473 (+)
G15415 NA other downstream 342609 8170696 ~ 8172491 (+)
LOC120543817 LOC104967478 other downstream 723504 8551591 ~ 8621654 (+)
LOC120544007 LOC106595375,LOC106565963,LOC106611916,LOC106588692,LOC106572435,LOC106612550,LOC106583987,LOC103477372 other downstream 967983 8796070 ~ 8808975 (+)
G15525 NA other downstream 1021414 8849501 ~ 8850871 (+)

Expression


Co-expression Network