LOC120543817 (LOC104967478)


Basic Information

Item Value
gene id LOC120543817
gene name LOC104967478
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8551591 ~ 8621654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU20893
cctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctgtgtctgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgttggtccaGTGGAGTGCAGTGACGGTGTGTTCAGGGAGCGTTCTGGCGTTCTGAGCAGCGTAGACTTCCCGTCTCCGTACCCGAAGAGCTCCGAGTGTTCGTACCGGATAGAAGTGGCGCCGGGCTTCAGGCTCCGCCTCCAGTTCGACCAGCGCTTTGATGTGGAGGACCACCCTGATGTACACTGTCCCTATGACCACataaagGTGACGGCTGGCAGCAGTGAGTTTGGTCCGTTCTGCGGAGACCGAGCTCCAGACGACATCCAGACGGACAGCAACGTGGTCACGGTGGTCTTCATCAGCGACAACTCAGGAGATAACACAGGCTGGAGACTCACATACACATCTACAGGAAGTAAGTGTCCTGCCCTTGAAGCCCCGCCCAATGGCATGCTGAACCCCGTCCAATCAGAATACTTCTTTAAGGACCACGTCCTGTTCACCTGTTCCCCTGGATACAGGCTGCTGAAGgACGGAGAGACTCTGGATCATTACCAGTTGGACTGTCAGGCTGACGGCTGGTGGAGCAGCAGTCCTCCTCTCTGTTACAaAACAGACACTGGGAGGAAGAGGCGGGCTCTGTCCACCATcttaaccaatcacagtccaGATTAGGCAAAGAGTGATTCTGACTGGCCGATAGAGTAACTGTAGGAACAGCTTACACGTTTGTCTGTAGTTTTAAATTATTT
>TU20894
GGGTCACCCGGCGGTGGGAGGTGTTAGGCCTGGTGTCCTGGGCCGGGCCAGAGGAGTGTGGCAGCCACAGGGTCTACGGAGTCTACACTCGGGTCAGGAAGTATGTGGAGTGGATAGAGAGGCAGCTACAGGCTGCTGCCTGAGGGTGagtcaggcagacagacagacaggcagatggtagagagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagagagacagacagccaggtaggcagacagacagacagacagacagacagacaggcaggcagacaggcaggcaggcagacaggcagacaggcaggcaggcagccaggtaggcagacagacagacagacacacagacggtagagagacagacagacagacagacagacagacacacagacagacagacagacagacagagacagacagacacgtagacagacagacagaaagacagaaagacaggcagacagacagacagacagacagacagatggctGTTTGTGTTTCTGAGTCTTTAATGTTTTGATGAATATTTCCACCAAAGAATTAAACTCCATTttctatcccagaatgctttgCTGCCTCCAACACAGAAATTAGACGAAGCCAcattatttaagatattttatatatttaaacatcTTATCTCCACTGATTTGTATCTTCTTCACTTCTGTCGTCATATTTTACACTCCTT
>TU20896
GGGTCACCCGGCGGTGGGAGGTGTTAGGCCTGGTGTCCTGGGCCGGGCCAGAGGAGTGTGGCAGCCACAGGGTCTACGGAGTCTACACTCGGGTCAGGAAGTATGTGGAGTGGATAGAGAGGCAGCTACAGGCTGCTGCCTGAGGGTGagtcaggcagacagacagacaggcagatggtagagagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagagagacagacagccaggtaggcagacagacagacagacagacagacaggcaggcagacaggcagacaggcgggcagacaggcaggcaggcagccaggtaggcagacagacagacagacacacagacggtagagagacagacagacagacagacagacagacacacagacagacagacagacagacagacagatggctGTTTGTGTTTCTGAGTCTTTAATGTTTTGATGAATATTTCCACCAAAGAATTAAACTCCATTttctatcccagaatgctttgCTGCCTCCAACACAGAAATTAGACGAAGCCAcattatttaagatattttatatatttaaacatcTTATCTCCACTGATTTGTATCTTCTTCACTTCTGTCGTCATATTTTACACTCCTT
>XM_039777085.1
ACACATCTACAGgtaatacacactatatactacacactacacactacacaactcAGGAGATAACACAGGCtggagactcacacacacatctacaggtaatacacactatatactacacactacacactacacaactcAGGAGATAACACAGGCtggagactcacacacacatctacaggtaatacacactatatactacacactacacaactcAGGAGATAACACAGGCTGGAGACTCACATACACATCTACAGgtaatacacactatatactacacactacacactacacaactcAGGAGATAACACAGGCtggagactcacacacacatctacaggtaatacacactatatactacacactacacactacacaactcAGGAGATAACACAGGCTGGAGACTCACATACACATCTACAGgtaatacacactatatactacacactacacactacacaactcAGGAGATAACACAGGCtggagactcacacacacatctacaggtaatacacactatacactacacactacacaactcAGGAGATAACACAGGCtggagactcacacacacatctacaggtaatacacactatacactacacactacacaactcAGGAGATAACACAGGCTGGAGACTCACATACACATCTACAGgtaatacacactatatactacacactacacaactcAGGAGATAACACAGGCTGGAGACTCACATACACATCTACAGgtaatacacactatatactacacactacacactacacactacacactacacactacacaactcAGGAGATAACACAGGCTGGAGACTCACATACACATCTACAGGTAATACACACtatacactacacactacacaactcAGGAGATAACACAGGCtggagactcacacacacatctacaggtaatacacactatatactacacactacacaactcAGGAGATAACACAGGCtggagactcacacacacatctacaggtaatacacactatatactacacactacacaactcAGGAGATAACACAGGCTGGAGACTCACATACACATCTACAGGAAGTAAGTGTCCTGCCCTTGAAGCCCCGCCCAATGGCATGCTGAACCCCGTCCAATCAGAATACTTCTTTAAGGACCACGTCCTGTTCACCTGTTCCCCTGGATACAGGCTGCTGAAGgACGGAGAGACTCTGGATCATTACCAGTTGGACTGTCAGGCTGACGGCTGGTGGAGCAGCAGTCCTCCTCTCTGTTACAtggTGGATTGTGGGAAGCCGCGGGACGTTGCCATGGCCGACGTGGTGTTTGGTAGTCATGACAACAGCACACTGTTTGGGGCGACGGTTCGCTACGTCTGCAGGGACGACTCCATCATGCTCAGTACACAGAGTACACAGAGTAGTACACAACCTAACTCCTCCACACTCAACAgttccTATACCTGTGGTCCAGGAGGAGAATGGATCAGTCCAGAATCAGGACCCAGACTGCCCACCTGTCTACCAGCCTGTGGTCGGCCGGCCCGCTCCCTGCCCCCCCAGGTGAAGCGTATCGTGGGCGGTCGGGGCGCTGAGCCGGGCCTGTTTCCCTGGCAGGTCCTGCTGAGCGTGGAGGATCTGTCCCGTGTCCCAGAGGACCGCTGGTTCGGTTCCGGGGCTCTGCTGTCCCAGTCCTGGGTCCTGACGGCCGCCCACGTCCTGCGGTCCCAGCGCAGGGACACCAGCGTGGTCCCCGTGGCGCCCGAACACGTCAAGGTGTTCCTGGGTCTTCTTGATGCGGGAGACAAGCGTCTGGCCACCAACCGTTCAGTGCAGGAAATCGTCCTCCATCCAAACTTCCAGCCCAACAACTACAACAACGACATCGCCCTGCTGAGGCTGGACCAGCCGCTCGACTTCACCGAGCTCATccgacctgtctgtctgcctccacCGCACATCCCGggagaccccccctctcccctgcCGAACTCTCTGGGTTTAGTCGCAGGTTGGGGAATCTCCAACCTGAACCTGAACGCCTCCCCCTCTGACCCCCCCgcgctgacctctgacccccccgcgctgacctctgaccccccctcgctgacctctgacctcctgCAGTACGTCAAGCTTCCGGTGGTTTCTCAGGACGAGTGTTTGGCGAGCTATGCCTCGCGCTCCGGCAGCTACAACATCACGGACAACATGTTCTGCGCGGGGTTCTTCCAGGGGGGGAGGGACACATGCCTGGGGGACAGCGGGGGGGCGTTTGTGATGCAGGACGGGGTCACCCGGCGGTGGGAGGTGTTAGGCCTGGTGTCCTGGGCCGGGCCAGAGGAGTGTGGCAGCCACAGGGTCTACGGAGTCTACACTCGGGTCAGGAAGTATGTGGAGTGGATAGAGAGGCAGCTACAGGCTGCTGCCTGAGGGTGagtcaggcagacagacagacaggcagatggtagagagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagagagacagac

Function

NR:

description
PREDICTED: transmembrane protease serine 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20893 False 896 lncRNA 0.48 6 8551591 8587437
TU20894 False 721 lncRNA 0.50 2 8620854 8621654
TU20896 False 643 lncRNA 0.47 3 8620854 8621654
XM_039777085.1 True 2527 mRNA 0.53 8 8581479 8621108

Neighbor

gene id symbol gene type direction distance location
LOC120543718 NA coding upstream 81831 8429225 ~ 8469760 (+)
nyap2a LOC103360223 coding upstream 129255 8399400 ~ 8422336 (+)
LOC120551081 NA coding upstream 244381 8244631 ~ 8307210 (+)
LOC120543907 NA coding upstream 425922 8123625 ~ 8125669 (+)
LOC120551067 NA coding upstream 432945 8115385 ~ 8118646 (+)
mindy4b NA coding downstream 637423 9259077 ~ 9275432 (+)
LOC120551113 NA coding downstream 661810 9283464 ~ 9301261 (+)
LOC120543803 NA coding downstream 687545 9309199 ~ 9315322 (+)
LOC120543792 NA coding downstream 687553 9309207 ~ 9329512 (+)
LOC120543784 NA coding downstream 709913 9331567 ~ 9339168 (+)
LOC120544074 NA non-coding upstream 16850 8531244 ~ 8534741 (+)
G15487 NA non-coding upstream 47437 8503817 ~ 8504154 (+)
LOC120544094 NA non-coding upstream 68297 8482230 ~ 8483294 (+)
G15471 NA non-coding upstream 73173 8478169 ~ 8478418 (+)
G15461 NA non-coding upstream 114853 8435932 ~ 8436738 (+)
G15507 NA non-coding downstream 68358 8690012 ~ 8700884 (+)
G15513 NA non-coding downstream 129964 8751618 ~ 8911859 (+)
G15519 NA non-coding downstream 130087 8751741 ~ 8754422 (+)
G15485 NA non-coding downstream 154984 8776638 ~ 8777948 (+)
G15518 NA non-coding downstream 178716 8800370 ~ 8829278 (+)
G15415 NA other upstream 379100 8170696 ~ 8172491 (+)
LOC120543711 LOC102298536 other upstream 659118 7858053 ~ 7892473 (+)
rffl rffl other upstream 698162 7806809 ~ 7853429 (+)
LOC120543808 NA other upstream 723504 7826610 ~ 7828087 (+)
G15234 NA other upstream 1059534 7491365 ~ 7492057 (+)
LOC120544007 LOC106595375,LOC106565963,LOC106611916,LOC106588692,LOC106572435,LOC106612550,LOC106583987,LOC103477372 other downstream 174416 8796070 ~ 8808975 (+)
G15525 NA other downstream 227847 8849501 ~ 8850871 (+)
LOC120543609 LOC108250351,LOC108250349 other downstream 285076 8906730 ~ 9098564 (+)
G15540 NA other downstream 304938 8926592 ~ 8930270 (+)
G15552 NA other downstream 372527 8994181 ~ 9091968 (+)

Expression


Co-expression Network