LOC120551159 (fam13c)


Basic Information

Item Value
gene id LOC120551159
gene name fam13c
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9631391 ~ 9652831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU21174
CCGAAATAACAACGCGGCTCTATTTAACGACCAAATCTTACGGATACAATTAGATGATCATCTTTGCTGAGTCCATCCAAGCCTCCTCTGTAATTCGGCTGACACATAATTCACGAAAGAAGACGTGTTAAAGTATTATTTTAAGTCTATCCAGGCAGTCACCCCTCTGCTCTCCATACTCCGCCGTGTTTCTCATGAATATGAAAtggacagaaaagaaaagcagtCTGGCGAGAGTAACAAACACCACTTTGACACAACACAGCGCTTTCTAGAGTCCCTGTTGTGTCCACCTGATGTTAGCAGCTTTCCTCTCATGAAATTAGTCATCAATTCATCTGAATTTATCGTCATTTTGTGGCTTTTTATTTGAGTTTTTCGGGGGAGGAAGCCTCTCATCGTCTCCCTGGCTGCAGTACCATTCTCCGCCTGAACGGTTATGATGCGCCGGCGGGGGCGCTATTTcaccaaaaacacaaatatcacTAAAAACAAATGGGAAGGGaatttaaaaatctaaattttgtttacttaaaaatgAGAACGCTTCACGATTATGCGTGTCATCCTTGCACAGGGCCATGCTAATCttctctgtatcgttcccaaTTTATTACATGTGCTGCAAATTGTAGCACATGTAGTAACTTATACTGTATTGTATTTAAAGAGGCGCGAGCCCACTGAAGTTAAAGTCAGGGGTTCATCTCAGATAAGTGACAGTTTAATACTTTAAAAGACAGGACATAGCATCAGACTGAAGCCTGAGTACTGATGTACTATTTGCTCTGTATAAACTGGGTTTAGGGACAAGTGTAAAGTTCTGATCGTGCAGAGCTGAAAAGGATTGTGGGATTTTTATGCAAAGCAtccatacatttttatttattttaataaatatttcattattttttcatttttattttagttttttaattttaaacatcTGTTACTACAAGGAATGGTAGATCCTGACATACACGGTTCAGTaaaattaaatctttaattcTGAGATTATTGCACTCTGAACGTCACACATACGTTTTGATGAGGGTGTAGTTCTGTTAACCGGCCGCCAGGGGCAGATTTGTTTGTAATGTACATACAGGGGGAGTGATGGCGACGCTACACAGGCTGGGATCTGGCTAACATCTGGAACCAGTGATCCatagcagcagcagaagaagcCACATTTCCTTCTGTGGTCCCGGTAACCTGTTTCCCGGGACGTGGTTAATCTCTGGATCAGCATGTCTGGCATGTTCTGCTTCTGCCTGCACAGTTCGCTGCTGAAGCTCCAGAGGCTGGAGGTGGAGGGGGGCCCGTCGCTGCGTCAGTCCCCCGAGGAGAGCCACCCTGCCCTGGGCAGCAAGGAGCAGAAGAGCCCCTCTGGCCCCATGGAGCTCGGAGGGGTCCCCGCGGATGAAAACAGCCCCCCAGgtcagCTACCGGTCCTCAGCAgacctcctctgtctcctcgtCCCACGCCGTTGACCTCCATCTACCCTCAGCAGCCCCCCAGCCCCCCCGACGGAG
>TU21175
CAGCATCAGCATCGGTGAACGTGCAGAACGTGACGATGAAAATGTAAAAGCTGTCAGCTGCTCGGAGAGGACTAAATCCTGGGAGTCGAACACGCAAAGAGAAGCTGAAATATTAAATATCACACTTCATCACTggagcaacagagagagagagagacagacagacagacagacaaccccCGAAAAGAAAGGTTTCCATTTCTGTGGCGTGTGGAGCGACTACTCTCTGGATCGTGGCTCGTTTGTCTGGACGATAACCTGCTGACATCTCATCTTTTGGGTTGTGGGGACAGACTACATCTTGGACTCCATCCAAGCctgctttattttttatatattaggGATGTAATGTTGCGTCGTCAATcgatataaatgtgtaaaagacTACAACGTATACGTACTAGGACGTACTCCACTTCAGATGTCACTATAGGTCTTCTTAGTTAATTTATTTGAAGAGATTTTGcttgtatttatttagttatttcgATGCTGGATTTATAAAATCCTGAGAGAATTATATTGTGAATTTAGCATCGTAGCAAATGGTGAGTTGAGTGTATCGTTGCATCCTGACAAAGTAGGTGCTTAAAGAATCTgccgctcctcctcctcctccacatgtGGTGCTCCAGAGGCTGGGATCTGGCTAACATCTGGAACCAGTGATCCatagcagcagcagaagaagcCACATTTCCTTCTGTGGTCCCGGTAACCTGTTTCCCGGGACGTGGTTAATCTCTGGATCAGCATGTCTGGCATGTTCTGCTTCTGCCTGCACAGTTCGCTGCTGAAGCTCCAGAGGCTGGAGGTGGAGGGGGGCCCGTCGCTGCGTCAGTCCCCCGAGGAGAGCCACCCTGCCCTGGGCAGCAAGGAGCAGAAGAGCCCCTCTGGCCCCATGGAGCTCGGAGGGGTCCCCGCGGATGAAAACAGCCCCCCAGgtcagCTACCGGTCCTCAGCAgacctcctctgtctcctcgtCCCACGCCGTTGACCTCCATCTACCCTCAGCAGCCCCCCAGCCCCCCCGACGGAG
>TU21176
cccctccctccctccatcctccacAAACCTGAGGATGAGTAATCCAATAACCGCGGGAGAGAGATGCTGAGAGAGATATAacaggagggagaggggaagggagggagagagagggagggagggaggaaggataTTAACTCAGCATCAGCATCGGTGAACGTGCAGAACGTGACGATGAAAATGTAAAAGCTGTCAGCTGCTCGGAGAGGACTAAATCCTGGGAGTCGAACACGCAAAGAGAAGCTGAAATATTAAATATCACACTTCATCACTggagcaacagagagagagagagacagacagacagacagacaaccccCGAAAAGAAAGGTTTCCATTTCTGTGGCGTGTGGAGCGACTACTCTCTGGATCGTGGCTCGTTTGTCTGGACGATAACCTGCTGACATCTCATCTTTTGGGTTGTGGGGACAGACTACATCTTGGACTCCATCCAAGCctgctttattttttatatattaggGATGTAATGTTGCGTCGTCAATcgatataaatgtgtaaaagacTACAACGTATACGTACTAGGACGTACTCCACTTCAGATGTCACTATAGGTCTTCTTAGTTAATTTATTTGAAGAGATTTTGcttgtatttatttagttatttcgATGCTGGATTTATAAAATCCTGAGAGAATTATATTGTGAATTTAGCATCGTAGCAAATGGTGAGTTGAGTGTATCGTTGCATCCTGACAAAGTAGGTGCTTAAAGAATCTgccgctcctcctcctcctccacatgtGGTGCTCCAGAGGCTGGGATCTGGCTAACATCTGGAACCAGTGATCCatagcagcagcagaagaagcCACATTTCCTTCTGTGGTCCCGGTAACCTGTTTCCCGGGACGTGGTTAATCTCTGGATCAGCATGTCTGGCATGTTCTGCTTCTGCCTGCACAGTTCGCTGCTGAAGCTCCAGAGGCTGGAGGTGGAGGGGGGCCCGTCGCTGCGTCAGTCCCCCGAGGAGAGCCACCCTGCCCTGGGCAGCAAGGAGCAGAAGAGCCCCTCTGGCCCCATGGAGCTCGGAGGGGTCCCCGCGGATGAAAACAGCCCCCCAGgtcagCTACCGGTCCTCAGCAgacctcctctgtctcctcgtCCCACGCCGTTGACCTCCATCTACCCTCAGCAGCCCCCCAGCCCCCCCGACGGAG
>XM_039788367.1
gtcgaAGCAAACGTCACCCACCCAccctcgcccctccctccctccatcctccacAAACCTGAGGATGAGTAATCCAATAACCGCGGGAGAGAGATGCTGAGAGAGATATAacaggagggagaggggaagggagggagagagagggagggagggaggaaggataTTAACTCAGCATCAGCATCGGTGAACGTGCAGAACGTGACGATGAAAATGTAAAAGCTGTCAGCTGCTCGGAGAGGACTAAATCCTGGGAGTCGAACACGCAAAGAGAAGCTGAAATATTAAATATCACACTTCATCACTggagcaacagagagagagagagacagacagacagacagacaaccccCGAAAAGAAAGGTTTCCATTTCTGTGGCGTGTGGAGCGACTACTCTCTGGATCGTGGCTCGTTTGTCTGGACGATAACCTGCTGACATCTCATCTTTTGGGTTGTGGGGACAGACTACATCTTGGACTCCATCCAAGCctgctttattttttatatattaggGATGTAATGTTGCGTCGTCAATcgatataaatgtgtaaaagacTACAACGTATACGTACTAGGACGTACTCCACTTCAGATGTCACTATAGGTCTTCTTAGTTAATTTATTTGAAGAGATTTTGcttgtatttatttagttatttcgATGCTGGATTTATAAAATCCTGAGAGAATTATATTGTGAATTTAGCATCGTAGCAAATGGTGAGTTGAGTGTATCGTTGCATCCTGACAAAGTAGGTGCTTAAAGAATCTgccgctcctcctcctcctccacatgtGGTGCTCCAGAGGCTGGGATCTGGCTAACATCTGGAACCAGTGATCCatagcagcagcagaagaagcCACATTTCCTTCTGTGGTCCCGGTAACCTGTTTCCCGGGACGTGGTTAATCTCTGGATCAGCATGTCTGGCATGTTCTGCTTCTGCCTGCACAGTTCGCTGCTGAAGCTCCAGAGGCTGGAGGTGGAGGGGGGCCCGTCGCTGCGTCAGTCCCCCGAGGAGAGCCACCCTGCCCTGGGCAGCAAGGAGCAGAAGAGCCCCTCTGGCCCCATGGAGCTCGGAGGGGTCCCCGCGGATGAAAACAGCCCCCCAGgtcagCTACCGGTCCTCAGCAgacctcctctgtctcctcgtCCCACGCCGTTGACCTCCATCTACCCTCAGCAGCCCCCCAGCCCCCCCGACGGAGCCCCCCCCTCCCCCCAGCCCCCCCCACCCAGCAGAGGAAGCGGGGCCTCTGCTGCGCTTGCTGGGGGGGCCAGCCCTCTGCCCTCCCCCCGCTGCCCCAGCCTCAGCCACCGGTTCAACTCTGACCCCGACAGCGCTCCATCGCCGCCCTGCAGCCAGCAGTACATACTGTGTCGGGGTCCGGACCGGGCCGAGGGCTCGGAGGACCAGGCGTGCCCCCCCTCCATCCAGTCCCTCACCAGACACATCCAGGCCCTGAAGAAGAAGGTCCGCCGGTTCGAGGACCAGTTTGAACACGAGATGAACTACCAGCCGTCCCACAACGATAAATACTCCAACCCAGAGATGGTCCGAGTCATGGGGGACCTGGCCAAGGCTCGCAAACAGCTCAAAGAGATGAGACTCAGACAGTCGGTGTTTGAGTCCGATGAGCCGGACGGACCAGAGAACAGCTGCAGGTCGCCGATGGACCAGCATCCGTCTCTGGAGGAAACGGTGGAGTCTCTATTCAGACGTCTGAGAGAGAAGAAACAGGCTCTGGGTCTGCCAGACGACACCAAGGAGATGACTCAGGCTCAGCTGGTGCTGGAGAAGATCACTCTGCAGAAATGTCTGCTCTACTTTGAGAGTCTGCACGGCCGAGCGGGAGTGAAACAGAAGAACGTGGTGAAGCCGCTCTATGACAGATACCAGCTGATCAAACGTTTACTGTGTGCCAGCCCGACTATCACCACCATAgaggaagaggacggtTCTGATGAAGACTCCCTGCCCGCcactgccccccctcccccccgcaCAGCGTCCAGCGAGAGGGGCGTCGAGCGGGACAGCCAGCCGCGGGACGGCGAGCAGCGGGACGGCGAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACGGCGAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACGGCGAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACGGGCGAGCAGCGGGACGGCCAGCAGCGGGACAGCCAGCAGCAGGATGGCGAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACGGCCAGCAGCAGGACGGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCAGGATGGCGAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCAGGATGGCGAGCAGCGGGACAGCCAGCAGCAGGATGGCGAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGCCAGCAGCGGGACAGTGAGCCGGCCTTGGTGTCCCCGTTAGCCGAAGTGAAGAACGTCTGTCCGCCTGCGGCTCTCACAACAGCCAACCTGCACGAAGCCTCCAGGTCTGATCTGCTGCGCTGTCTGCGCCAGACGAGGGCGGAGAAGAAGCTGCGCCGTAAAGCTCTGAGAGAGTTCGAGGACGAGTTTCACCGCCAGACGGGAAGGGTCTTCCAGAAGGAGGACCGTTCTCCGATGAAGGAGGAGTACCAGGACTACAAGCAGCTGAAAGCTAAGCTCCGCCTACTGGAAGTCCTGCTCAGCAAACAGGAAGTCCCCAGACCCATgtgacaggaaacaggaagtcccCAGAGCCATGTGACATGAAACCGAAGTGGCCAAAAGCCCTGAAACGGCAGAGCGGAGGCTAACGGAGGCTAACGTAGCTCCGACTCAGCTGCTACGTCTACAGTATGTTGTTTCAGAGCCTGGGATTGGCCGACAGTTGAACCAATCACTATTCTTGCAtgcaaaaaatgcaaaaaaaatgcaaagtcATGTTTCTGTAGAACGGGAAAGACTCTTCCACTTCCTCTCCAAActgtaaaaactgtaaatactCCAGAGAAGTTTTTTTAAAGCACGGAAAGAGTTCAA

Function

symbol description
fam13c Orthologous to human FAM13C (family with sequence similarity 13 member C).

NR:

description
protein FAM13C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21174 False 1536 TUCP 0.43 3 9631391 9636479
TU21175 False 1040 TUCP 0.57 2 9634443 9636479
TU21176 False 1179 TUCP 0.51 2 9634304 9636479
XM_039788367.1 True 3248 mRNA 0.58 12 9634274 9652831

Neighbor

gene id symbol gene type direction distance location
LOC120547748 LOC100707466,LOC102206406,LOC103373746,LOC101483620,LOC102290800 coding upstream 5610 9603260 ~ 9625781 (+)
LOC120551143 NA coding upstream 76775 9544019 ~ 9554616 (+)
LOC120543784 NA coding upstream 292223 9331567 ~ 9339168 (+)
LOC120543792 NA coding upstream 301879 9309207 ~ 9329512 (+)
LOC120543803 NA coding upstream 316069 9309199 ~ 9315322 (+)
clip3 clip3 coding downstream 97800 9750631 ~ 9797726 (+)
trnar-ucu_10 NA coding downstream 217002 9869833 ~ 9869924 (+)
trnar-ucu_11 NA coding downstream 231682 9884513 ~ 9884604 (+)
si:ch211-137a8.4 LOC103372141,LOC107102523,LOC105915351,LOC101172006,LOC106961384,LOC103378353 coding downstream 403163 10055994 ~ 10119839 (+)
LOC120550666 LOC105915347 coding downstream 706558 10359389 ~ 10376811 (+)
G15653 NA non-coding upstream 1142 9627807 ~ 9630249 (+)
G15657 NA non-coding upstream 24346 9606699 ~ 9607045 (+)
G15577 NA non-coding upstream 31534 9432362 ~ 9599857 (+)
G15619 NA non-coding upstream 41248 9589607 ~ 9590143 (+)
G15637 NA non-coding upstream 94798 9533530 ~ 9536593 (+)
G15660 NA non-coding downstream 11170 9664001 ~ 9664312 (+)
G15662 NA non-coding downstream 27336 9680167 ~ 9680904 (+)
G15666 NA non-coding downstream 32185 9685016 ~ 9685361 (+)
G15668 NA non-coding downstream 39572 9692403 ~ 9693478 (+)
G15684 NA non-coding downstream 159015 9811846 ~ 9812132 (+)
serp1 NA other upstream 145544 9411490 ~ 9485847 (+)
G15628 NA other upstream 172174 9458478 ~ 9459217 (+)
G15605 NA other upstream 253187 9374154 ~ 9378204 (+)
G15572 NA other upstream 276763 9272899 ~ 9354628 (+)
G15565 NA other upstream 509099 9113842 ~ 9122292 (+)
LOC120551195 NA other downstream 213879 9866710 ~ 10003372 (+)
G15712 NA other downstream 349419 10002250 ~ 10003595 (+)
zgc:101731 LOC106580895,LOC100194580,LOC103372138 other downstream 735401 10388232 ~ 10505338 (+)
G16267 NA other downstream 2241673 11894504 ~ 11900873 (+)
G16467 clns1a,LOC102781126 other downstream 2743164 12395995 ~ 12409274 (+)

Expression


Co-expression Network