LOC120543625


Basic Information

Item Value
gene id LOC120543625
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9130984 ~ 9210517 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU21489
gactgagtggctgtaacatgtcagagagaagctgtgaagctctgtcctcagttctcagttcccagtcctctagtctgagagagctggacctgagtagcAACAACctgcaggattcaggagggaagctgatctcTGTTGGACTTAAGAgttcacactgcacactggagactctcagtctgtcaggctgtctgatctcagaagaaggctgttcttctctggtctcagctctgagcgtcaacccctcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagTTACTGTCAGAGGGACTGAAAGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacactggacacaaacacagtggacagaaaactcaaactgtctgacaacaacaggaagatgacattagtggaggaggatcagccatatcctgatcatccagagaggtttgactcctg
>TU21491
ACAATgacatAGTAAcacccatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgccggctctctgtccttctacagagtctcctctgactcactgatccacctccacaccttcaacaccatattcactcagcctctctatcctgggttcaggttcagttctcgtggttcctcagtgtctctgtgtcctctgtaggacggagagtctcctcctgtttctcactgctgatcagttgagtctgtacaGGATCACACTAACAGACATATTTCGGCTTATTGTTATgaactaatga
>XM_039776768.1
CAATCAGAGCAGTCCAGTACGTGGAGCTGTGACTCATCAGGAAACAACTCACCTGAGTTGTTCTACGTCGACATTTTGGACTGTTTGaagaaactACTGACTTCAGATCAGAAGATGAGTGgtttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCTGTCTATGAAGAGTGACCGGTCCAATGATCATCCTCCAGACTTCAGTAATgaacctggaccctcagacacaaaAGTTCAGGacaacagacagagagcagagtctGTAGTATCTGGCTGTCTGTCTATGAAGAGTGACCGGTCCAAAGACCCTCCTCTGACCTTCAGTAATgaacctggaccctcagacacaaaagagaggaagaggagtgatGTTTCTGAGGAGGAGCAGCCgtccagaaccagaaccagagctGGACtccagacagccaatcagagcagctcTGAACAAATGAATGTTGGTCGTCAGAAACATAAGATCAGTCTGAAGGGGACATTTGAACGTGTGACTGAAGGAGCTGAAACAGGAAGTAGAACCCTCCTCAACAGGATCTACACTGTCCTCTACCTCATAGAGGGACAGAGTGAAGAGGTTAATACCCAACATGAGGTGAGGCAGCTCGAGTCAGCTTCCAAGAAGAAGATCCTCCATGACTCTCCAATCAAGTGCTGTGACATCTTTAAAGCCTCACCTGaccaacagaaacacatcagaGTGGTTCTGACGAGCGGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAGAACCAAGATATCAGTCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCGTGTTTTCCATCCAACATTACAGGAGGTCCCAGCAGAGCAGCTCGCTGGCTCTAAACTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAACAATGAGGCTGTTTCTGATGTCACACAGAAGTCATCGGTTAACGTGCTGTTGACAAACCTCATCCAGGGGAAGCTGCTTCCCTCGGCTCTCATCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACAAGGCTTCACTGATgcccagaaggaggagtacttcaggaagagagtcagtgatgaagagcagtccagcagaatcatctcccacatcaagacctccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagctCAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTCGTTCATCTGagcgttcaggagtttctggctgcagtctacctgttccactgttaCACCAACAGGAACATAGACATACTGAAGGACTTCCTGAGGAAGAGAGCTATGGATTATGATGGTCATGGTGATTGGGACAATGATAATTACCCATCCCTGGATGTCTTTCTGAAGAGAGCTATGAAGAAATCCCTTGAAAGTGTAAATGGCCACCTGGACCTGTTTGTCCGCTTCCTTCATGGCCTCTCTCTGGAGTCCAACCAGAGACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGAGCCATCAACAACCTGAAGGAGATGAACAGTAATAAGATCTCTCCTGACAGAAGCATCAACCTCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAGAGAACAGATCAGAGAAGAGACTCTCTGTGTTCCACTGCTCAGCTCTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGACCTGGAGAAGTACAACACATCATGGGAGGGACGACagagactgattccagctgtgaGGAACTGCAGAAAGGCTCGactgagtggctgtaacatgtcagagagaagctgtgaagctctgtcctcagttctcagttcccagtcctctagtctgagagagctggacctgagtagcAACAACCTGCAagattcaggagggaagctgatatctgttggactgaagagtccacactgcagactggagactctcagactgagtgactgtaatctgtcagagaaaagctgtggagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgactaacaacaacctgcaggattcaggagggaagctgatctcTGTTGGACTTAAGAgttcacactgcacactggagactctcagtctgtcaggctgtctgatctcagaagaaggctgttcttctctggtctcagctctgagcgtcaacccctcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagTTACTGTCAGAGGGACTGAAAGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacactggacacaaacacagtggacagaaaactcaaactgtctgacaacaacaggaagatgacattagtggaggaggatcagccatatcctgatcatccagagaggtttgactcctggtatcagctgctgtgtagagatggtctaactggtcgctgttactgggaggttgagaggagaggagatgttttcatatcagtgagttacagaggaatcagcaggagaggagacggtgatgactgtgtgtttggatggaatgatcagtcctggagtctgaaGTGCTCTGATGTTAGTTACTCTGTCTGTCACAATAACAGAGTAAcacccatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgccggctctctgtccttctacagagtctcctctgactcactgatccacctccacaccttcaacaccatattcactcagcctctctatcctgggttcaggttcagttctcgtggttcctcagtgtctctgtgtcctctgtaggacggagagtctcctcctgtttctcactgctgatcagttgagtctgtacaGGATCACACTAACAGACATATTTCGGCTTATTGTTATgaactaatgaatgaactttgtataaaataatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21489 False 526 TUCP 0.51 5 9131539 9144120
TU21491 False 345 lncRNA 0.43 2 9131006 9210517
XM_039776768.1 True 3527 mRNA 0.49 11 9130984 9158835

Neighbor

gene id symbol gene type direction distance location
LOC120543996 NA coding downstream 207618 8921436 ~ 8923366 (-)
atg16l1 atg16l1 coding downstream 250938 8849490 ~ 8880046 (-)
LOC120544027 ap2m1,LOC108440593,LOC106580654,LOC106612407 coding upstream 277805 9488322 ~ 9502894 (-)
LOC120551135 LOC101071594,LOC102800178,LOC103356830 coding upstream 313690 9524207 ~ 9531095 (-)
LOC120543835 NA coding upstream 320504 9531021 ~ 9543141 (-)
LOC120554346 NA coding upstream 421406 9631923 ~ 9632028 (-)
dharma NA coding upstream 637481 9847998 ~ 9851668 (-)
G15874 NA non-coding downstream 25383 9100931 ~ 9105601 (-)
G15867 NA non-coding downstream 48430 9042283 ~ 9082554 (-)
G15858 NA non-coding downstream 52032 8996040 ~ 9078952 (-)
G15853 NA non-coding downstream 74005 8981188 ~ 9056979 (-)
G15866 NA non-coding downstream 94244 9032846 ~ 9036740 (-)
G15916 NA non-coding upstream 112242 9322759 ~ 9347087 (-)
G15945 NA non-coding upstream 152088 9362605 ~ 9363144 (-)
LOC120544080 LOC108250349,LOC107380983,LOC102776571,LOC108242155 non-coding upstream 176158 9386675 ~ 9397215 (-)
G15947 NA non-coding upstream 191280 9401797 ~ 9402704 (-)
G15928 NA non-coding upstream 200976 9411493 ~ 9438842 (-)
G15820 NA other downstream 84551 8971914 ~ 9046433 (-)
spint2 NA other downstream 216007 8880438 ~ 8914977 (-)
LOC120544569 dgkd,LOC102780004 other downstream 388861 8692074 ~ 8742123 (-)
G15771 NA other downstream 474021 8601917 ~ 8656963 (-)
G15757 NA other downstream 661224 8468357 ~ 8469760 (-)
G15903 NA other upstream 27450 9237967 ~ 9238784 (-)
eif2a eif2a other upstream 137692 9348209 ~ 9433655 (-)
LOC120551129 NA other upstream 302959 9513476 ~ 9522231 (-)
LOC120551163 NA other upstream 466318 9676835 ~ 9710132 (-)
G16066 NA other upstream 926171 10136688 ~ 10138347 (-)

Expression


Co-expression Network