LOC120544465 (islr2)


Basic Information

Item Value
gene id LOC120544465
gene name islr2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12625965 ~ 12630092 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU22712
CGCAGGTTGGAAAAAAAGCGCCTTCGGACCGCAACAGCGACTCACCGGAAAAAATGTTCCCTCCACCGCCCTTTACCAACGCTGTCGATGTCTGCAAAAGTCATGTGAAAGGATCCGCAACCTAAGAGGAGGACTctcttaaaaaaagtttttttcgaCCATTAAACTTGTTTCTCTTAAAAGTTTTTTTCGACCATTAAACTTGTTTCTCTTAAAAGTTTTTTTCGACCATTAAACTAGTTTCTCTTAAAAGTTTTTTTCGACCATTAAACTTGTTTCAGAGGATTGGAAACCTCGGGAAGTGATTAATAACACACAGGAATTGAAGTTAACATTGGACAGGT
>XM_039778242.1
AGGCTTGGGTCGGGGTAATAAATTAAACATCAGGTCCTAAATTATGAATTTTCTTTGAGGGTGGAGGACCCGGAGCGTCTGTATCTTTAATAGTGATGAGAGAGATGGAAGAGGCTGCGCGTTCATGGTTCCTTTTCTCGCTTCGCGGCGTCGGGAACGCGCAGTAGAGCCCACCCTCGCAGGTTGGAAAAAAAGCGCCTTCGGACCGCAACAGCGACTCACCGGAAAAAATGTTCCCTCCACCGCCCTTTACCAACGCTGTCGATGTCTGCAAAAGTCATGTGAAAGGATCCGCAACCTAAGAGGAGGACTctcttaaaaaaagtttttttcgaCCATTAAACTTGTTTCTCTTAAAAGTTTTTTTCGACCATTAAACTTGTTTCTCTTAAAAGTTTTTTTCGACCATTAAACTAGTTTCTCTTAAAAGTTTTTTTCGACCATTAAACTTGTTTCAGAGGATTGGAAACCTCGGGAAGTGATTAATAACACACAGGAATTGAAGTTAACATTGGACAGGTGCAGAAAATGGCGAGACAGCTCCTGCAGCACCTTGCCCTGTGGACTACTGTGGTTGGCATTGTGCAGTGCTGTCCAGAGCTCTGCAGCTGCCAGGATAAATTTGCCCAGCAGTTTGCTGATTGTGCTTACAAAGACCTGCTGGTAGTACCTGTGGGTTTCCCCACCAATGTTAACACCGTGAGCCTTTCTGCCAATAAGATCAAATTTCTGAAAAGTAAAAGCTTCATCAATATCACACAGGTCACCTCTCTCTGGCTGGCCCACAATGAGATAGTTACTATAGAAGCAGACACCTTGGCTGGTCTGATCCAGCTCCGCAACCTGGACATCAGCTACAACAAAATTGTGAACTTTCCATGGGAGGAACTGCACAACCTTACAGCCCTGCAGCTCCTGAAAATGAACAACAATGAGATGGTGAGCCTTCCAAAGGACGCATTTTCCACCCTGAAAGACCTGAGGTCGCTGcgcatcaacaacaacaagttTACCACCATTGTGCAGGGTACCTTCAGTGCTCTCTCCTCCATGGCCCACCTTCAGATTTTTAACAACCCCTTCAAATGCTCCTGCAGCCTGGAGTGGTTAAGGGATTGGATCACGACAACCGAGATTTCTGTCCCTGATACATATTCCATTTTATGTGATGCCCCTGAACACCTGAAGGGCACAATGGTTACAGCGATTCCCAAACTGGACTGTAAGGCCCCTACTGTCACAACTGCCTATCAGCCCAGCATTGAGAACACAGAGCTCTATGAGGGTTCGACGGTCATCTTAAATCGTGAGACAAAAGGGAGCCCCACACCACAGGTCATTTCGGAGGTGACTGCAGGAAATCAGAATGAGTTAGGTGGGGCAGAGAGCAATGTTAAAGTGGTAATGGCATTAAGCCTCGGTCTTATGCTCATGCTCTGAAGGGGAATGTGCGAGTTGAGAGCGTAGACCATGATGATTCAACTGAGGCTCAGGTAACAGCCTTTCTCCATGACAAATACATATCCATAAACAGACACAATATTGAGGCATGTCACATTATTCCATCAAGAAACCAGAGTGACAATCACATTGTCATTGTACGCTTTCCTAACAGAAAGCATAAAATTGACCTGCTCAGACAGGGCCGCAAATTGAAGGGCACAAATGTTTACATCACTGAGCATCTAAACAAAATGAATGCAGATATTGCAAGAAAGGCAAGGTTCTTGAAGAAACAAGGGAAGATTCAAGCTACCTGGTCCTCCTATGAGTTGGTTCATgtaacttttttattattttatttttccattgttaaagctttagttttTTGTTATGTCTAataatatgactagttttcatTTTTCCAGTTGTTCTGACAATGACCTGAGTGCGCCTGATTTTGAACAGAACATTGATCCAGAAAATAACTTTTATGTTAACATAAATAATAACTGCAGCTATTACACAGAGCAACAGttcaataataacattaaaattgaTTACAGCATATCTATCATTCATTTTAACAGCAGAAGTCTGTATTCAAACTTCCAGAATATAAAGGAATATTTAGGACAGTTCAAGCAACCCTTTAATATTATAGCTATTTCAGAAACATGGATTAATGCCGTTAGGGGCGTGGATTTTGAGTTACAGGGATATGAATTTAAGTATGTGAATAAACGgttgtggaggaggggtggcgCTCTTTATTGATAAAGGGCTAATTTACAAGGTTGTTGAAAACATGACAGTAatcatggatgaaataatggaGTGTATCTCAATTGAATTATGTATGTAGTAAGTTGTGTATATAGGAAACCAGGATCCAATGTTGAAATATTCACAGaaataatggaaaaaaatgtttaataaagtaAAGCATAAAGTCAACTATATATGTGGGGATTTCAACATTGACCTACTAAATCCCAACAAACACAAATCGACGGAAGAGTTTATTGAAACACTGTATAGTTTGAGTCTTtttccaacaatcacaaaaccTACCAGAATAACATGCAATGGTGCCACTCTGATAGATATGtttaatgaaagaaatggggGATATCGTCTAAGAGGTCATTGTATGTTTACGCAACTTCTTGTGCTTAAACCTACTGTTAAAagcatgtgtgtttcagtttgtggggtgaccttatggaatggactgaacaatgatatcaaacagagacagaatatcattcagttcaaaaatagattaaagacATCATTACTTGATCAATACAGAAAAGAATAAACTAAAACATAGGATTGGAATTTGTAATTTAAAGGTATTGTTGTATATAATTGTATTGTTGTAAATTACTGTAAGACCGAAAGATTGTATGCTGTATTTGCATATCTATTTTActttgtataatataattttgggaaataagggGCAGGACCAAATAAGCTATTtgcttctgcctgctccttctTGAACTAatcctttttatgttttttatgtttttgcaacattgttgattgttggagataaacaaataaactaacaGTGGACAAGATCTCTCCATCTGCATCTATTCAATTGGAATGATAGAAGAAAATATTTGAGAACTCAACTTTCAAGGGCTACAACGAAGTCATTCCCAAACCAAGGCCAGGAACgTGTGTAAAAAACAGCAGGACA

Function

symbol description
islr2 Acts upstream of or within retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human ISLR2 (immunoglobulin superfamily containing leucine rich repeat 2).

NR:

description
PREDICTED: immunoglobulin superfamily containing leucine-rich repeat protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22712 False 344 lncRNA 0.49 1 12629572 12629915
XM_039778242.1 True 3157 mRNA 0.40 3 12625965 12630092

Neighbor

gene id symbol gene type direction distance location
ech1 ech1,LOC101464128,LOC102289637 coding downstream 5450 12613881 ~ 12620515 (-)
med17 med17 coding downstream 40467 12573677 ~ 12585498 (-)
LOC120551266 NA coding downstream 58363 12546818 ~ 12567602 (-)
LOC120554567 NA coding downstream 59920 12565855 ~ 12566045 (-)
LOC120554484 NA coding downstream 61073 12564729 ~ 12564892 (-)
LOC120544471 hnrnpl coding upstream 7074 12637166 ~ 12651075 (-)
LOC120548705 NA coding upstream 246495 12876587 ~ 12907961 (-)
actn4 actn4,LOC106956878 coding upstream 281406 12911498 ~ 12983519 (-)
zgc:85932 LOC102780342 coding upstream 359705 12989797 ~ 13021862 (-)
trnak-uuu_3 NA coding upstream 368875 12998967 ~ 12999039 (-)
G16554 NA non-coding downstream 49382 12576233 ~ 12576583 (-)
G16531 NA non-coding downstream 181956 12443629 ~ 12444009 (-)
G16528 NA non-coding downstream 210052 12413484 ~ 12415913 (-)
G16525 NA non-coding downstream 231128 12394490 ~ 12394837 (-)
G16439 NA non-coding downstream 367341 12257150 ~ 12258624 (-)
G16676 NA non-coding upstream 192337 12822429 ~ 12822922 (-)
G16678 NA non-coding upstream 238789 12868881 ~ 12911173 (-)
G16688 NA non-coding upstream 385533 13015625 ~ 13137068 (-)
G16706 LOC101165163 non-coding upstream 493627 13123719 ~ 13125662 (-)
G16709 NA non-coding upstream 534725 13164817 ~ 13165594 (-)
LOC120554539 NA other downstream 83510 12542265 ~ 12542455 (-)
LOC120554398 NA other downstream 84582 12541220 ~ 12541383 (-)
LOC120554618 NA other downstream 85943 12539837 ~ 12540022 (-)
LOC120554358 NA other downstream 87090 12538712 ~ 12538875 (-)
LOC120554536 NA other downstream 88443 12537332 ~ 12537522 (-)
srsf7a srsf7,LOC103358184 other upstream 24513 12654605 ~ 12662190 (-)
slc8a2b LOC102291167 other upstream 34107 12664199 ~ 12855727 (-)
ccdc9 ccdc9 other upstream 594822 13224914 ~ 13261849 (-)
sae1 sae1 other upstream 683351 13313443 ~ 13335153 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other upstream 1032815 13662907 ~ 13762368 (-)

Expression


Co-expression Network