G16888


Basic Information

Item Value
gene id G16888
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13905204 ~ 13905788 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU23067
aggtcttcTTCACCGGCTTTCTTCATCAAGCCGTTACAGTTTACAGGCCTGTGTGGTCTACTGTACTTACGGGATTTTATATATAGTAAACGCCTATGGTATGCAGCAAATACTTATACAGGCTTTCTATATTGAGAGAATATCCCACGGATCAGGTCTGTTGTAGAGAAATGTCTTTGAAGAAGTGGAATTTAAGTTTAATATGCACTGATACATCATGCAATCCCTTGTtaagtgcctttttttttttaaatgtttaccgtctgtttgtgtgtctgggaACCTCAGGGGAAGTGGGAGTGCAATGGCTTTTTTTGAACTGTCTAGTCAATGATTAACCTGAATCTGTTTCCCTTCAATTGCCATCAGACGGATTTTGCTTTCACCCGAAGCCTTTGTAAAGTCGGCCAGCCATTTATTGTCTTGATATGGTCTTTCCTCGCATCTCTCTTCTTTTCATGTATGTGTCATCTTGGCATCTGTTGGTTTTATTGCAGCTTCATGTACAAAATAGAAACCAGGAATAAATGGG
>TU23068
aggtcttcTTCACCGGCTTTCTTCATCAAGCCGTTACAGTTTACAGGCCTGTGTGGTCTACTGTACTTACGGGATTTTATATATAGTAAACGCCTATGGTATGCAGCAAATACTTATACAGGCTTTCTATATTGAGAGAATATCCCACGGATCAGGTCTGTTGTAGAGAAATGTCTTTGAAGAAGTGGAATTTAAGTTTAATATGCACTGATACATCATGCAATCCCTTGTtaagtgcctttttttttttaaatgtttaccgtctgtttgtgtgtctgggaACCTCAGGGGAAGTGGGAGTGCAATGGCTTTTTTTGAACTGTCTAGTCAATGATTAACCTGAATCTGTTTCCCTTCAATTGCCATCAGACGGATTTTGCTTTCACCCGAAGCCTTTGTAAAGTCGGCCAGCCATTTATTGTCTTGATATGGTCTTTCCTCGCATCTCTCTTCTTTTCATGTATGTGTCATCTTGGCATCTGTTGGTTTTATTGCAGCTTCATGTACAAAATAGAAACCAGGAATAAATGGGATGAAAACTTgtacttgtttttttgtttcttgtgtTTTACCACTGACATTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23067 False 532 lncRNA 0.40 1 13905257 13905788
TU23068 True 585 lncRNA 0.41 1 13905204 13905788

Neighbor

gene id symbol gene type direction distance location
foxa3 LOC103364086 coding downstream 5300 13895034 ~ 13899904 (-)
pld3 pld3,LOC103364087 coding downstream 66398 13825916 ~ 13838806 (-)
prx NA coding downstream 93435 13765544 ~ 13811769 (-)
kcnk6 kcnk6,LOC104944303 coding downstream 167811 13719887 ~ 13737393 (-)
LOC120574254 sptbn4 coding downstream 211168 13576093 ~ 13694036 (-)
irf2bp1 LOC103377881,LOC103364085,LOC104964332 coding upstream 2341 13908129 ~ 13912626 (-)
nova2 LOC104927796,LOC101481231,LOC103377877,LOC107097063,LOC103138289,LOC106535085,LOC107379798,LOC100701682,LOC102216529 coding upstream 53982 13959770 ~ 14044832 (-)
eml2 eml2 coding upstream 260325 14166113 ~ 14203307 (-)
LOC120544580 hnrnpab coding upstream 379935 14285723 ~ 14286550 (-)
tyw1 LOC101477816,LOC102209872 coding upstream 438331 14344119 ~ 14415378 (-)
G16882 NA non-coding downstream 135124 13767899 ~ 13770080 (-)
G16751 NA non-coding downstream 506884 13396210 ~ 13398320 (-)
G16737 NA non-coding downstream 544985 13318063 ~ 13360219 (-)
G16716 NA non-coding downstream 649324 13254343 ~ 13255880 (-)
G16709 NA non-coding downstream 739610 13164817 ~ 13165594 (-)
G16889 NA non-coding upstream 116 13905904 ~ 13908030 (-)
G16898 NA non-coding upstream 22555 13928343 ~ 13928714 (-)
G16894 NA non-coding upstream 45273 13951061 ~ 14016471 (-)
G16933 NA non-coding upstream 232938 14138726 ~ 14140433 (-)
G16942 NA non-coding upstream 308060 14213848 ~ 14215714 (-)
G16880 NA other downstream 82147 13755949 ~ 13823057 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other downstream 142836 13662907 ~ 13762368 (-)
G16871 blvrb other downstream 197164 13701643 ~ 13708040 (-)
sae1 sae1 other downstream 570051 13313443 ~ 13335153 (-)
ccdc9 ccdc9 other downstream 643355 13224914 ~ 13261849 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other upstream 172789 14078577 ~ 14086764 (-)
caln1 caln1,LOC103372560,LOC107097061 other upstream 342140 14247928 ~ 14322833 (-)
si:ch1073-145m9.1 LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711 other upstream 1413052 15318840 ~ 15325799 (-)
lyrm9 lyrm9 other upstream 1740853 15646641 ~ 15651047 (-)
G17287 NA other upstream 1789766 15695554 ~ 15719041 (-)

Expression


Co-expression Network