G17128 (tbx2,LOC102786884)


Basic Information

Item Value
gene id G17128
gene name tbx2,LOC102786884
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15131079 ~ 15136613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU23388
GCGAGCATGTGCTGGGACAGATGGAAGGGAAAGGGGTTGGGCGTTCCTCCTGTGCCCTGGGCGGAGAGGCTGCCATTTTCCAAACCATTTACAGAGGCCAATAGATGCCCCATGCCCATagcagaaaaggctccaggggCCATGGCAAACTGCCCGGGGTGAAACAACAGCGGTGATCCGGCGCCCAGAGGGTTAAAGAACTGCTGACTGTGTAGgccagacagagccaggctttGTAAGTGGCCTGGGCTGAAGTGCGAGGGGCTCTCGGTCTGGACCATGAGAGGGGAGAAGGCCTCCTTAGTGGCACTAATGCCTCCGGCCTCTGAGTCCTTTGTCAACACGTCCGTGGTGTCCTTCCTGTGCCTGCCCTCCGCTTTGTCCTTCTCAAGGTTTCTTATACTGAATAAAGAGtcatccttcttttctgtgcTAGGCCTGTCCCTGATGCGCTCCTCACACCTGGAGCTGTAGGGGGACACAGGTTCAGGTCCCGGGCTGTTGGAGCCAGTGCAGCGCTCGTCTTGATGCTCCAGCTCCTGCTCGCTGTCAGTGCACGTTTTATCATCTACTCGACTGGGCCTGCTGAACCTCAGCGGGCTGGTGTCGGCTCCCAGCGGGGAGTGGACGGCGTCCCTGCCGGTCGGAGGCTCACTGGACGAGGCGTCTGAGTCCGCGCCTTCCCGGTCCGCCTTGCATTGGTCCTCATACATCCGCAGCGACGGCATGGTTAGCTGTTTCcttttctctctccttccattccCCGTGTCTCGGAATCCTTTGGCGAAAGGGTTGTTGTCAATCTTCAGCTGCGTTATCTTGTCATTTTGATATGCTGTCACAGCCACGAACTCGGTCTCCGGGAAGACGTAGGTCCTGAAGGTGCTGTAAGGGAGCTTCAGGATGTCGTTGGCCCGCACTATGTGGAACCTGGGCTGGTACTTGTGCATTGAGTTCAGGATGGTCtggacAAATCCGTGTTTGTCTGAAATGTTGTTGGTCAGCTTGAGTTTATGAAAAGCAACAGGCTTGGCCATCCACTGCTCGCCGGTGGCCGGGCTGTCCGGGTGGATATACATCCTCTTGGGCATCTCCGGGTCGGCCTTGCCCGCCACCATCCAGCGGGAGTTGTGGAACTTGTAGCGGCAGTCGTCCGCCGCCACAATGTCCATCAACAGGATGTATTTGGCTTTTTTATCGAGTCCATTTATTCGCACTTTGAACGGAGGGAACATCCTCCTGCAGAATAAAACACACAGGGAGTCAACACACTGTGGTTCAACCAAAACGCAACATCATATTATCATACAAGACTTGAACATATTTGACAAAAGAGGCACTGAAGGCAACGCGGACGCAGAAAAACACGCCGCtctgaaaagagaaaatattgTAATTGTCAGATATTATTCTCCAGTGTTGCACGCAATTAGGCGACAGCAAAaccatagtgtgtgtgtatgtgtgtctgtggtgtctgtccgcctgtgtgtgtgtgtgtgtatgtatgtgtgtgcgtgcgtatgtgtTGC

Function

symbol description
tbx2 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including cardiac jelly development; cellular senescence; and endocardial cushion formation. Located in nucleus. Implicated in vertebral anomalies and variable endocrine and T-cell dysfunction.

NR:

description
PREDICTED: T-box transcription factor TBX2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23388 True 1532 lncRNA 0.54 5 15131079 15136613

Neighbor

gene id symbol gene type direction distance location
opa3 opa3,LOC102789315 coding downstream 353702 14775034 ~ 14777377 (-)
LOC120547856 hnrnpul1 coding downstream 358291 14758259 ~ 14772788 (-)
ryr1b LOC103368738 coding downstream 395850 14649516 ~ 14735229 (-)
LOC120573088 lgals4 coding downstream 483911 14639028 ~ 14647168 (-)
LOC120552029 LOC101472404,LOC102077316,LOC102195539,LOC102293674,LOC101160571 coding downstream 527732 14597244 ~ 14603347 (-)
brip1 LOC104966431 coding upstream 50838 15187451 ~ 15281915 (-)
ppm1da ppm1d coding upstream 146133 15282746 ~ 15292215 (-)
sgsm2 sgsm2 coding upstream 402040 15538653 ~ 15624260 (-)
tnfaip1 tnfaip1 coding upstream 489477 15626090 ~ 15637956 (-)
LOC120570576 LOC104937503,LOC103370335,LOC101474512 coding upstream 514860 15651473 ~ 15682792 (-)
LOC120572551 NA non-coding downstream 1585 15119868 ~ 15129494 (-)
G17106 NA non-coding downstream 464476 14642911 ~ 14666603 (-)
G17104 NA non-coding downstream 492136 14637911 ~ 14638943 (-)
G17037 NA non-coding downstream 581585 14549249 ~ 14549494 (-)
LOC120551036 NA non-coding downstream 607723 14520766 ~ 14523356 (-)
G17132 NA non-coding upstream 2521 15139134 ~ 15139333 (-)
G17161 tbx4 non-coding upstream 47127 15183740 ~ 15184521 (-)
G17162 NA non-coding upstream 48035 15184648 ~ 15185567 (-)
G17163 NA non-coding upstream 49044 15185657 ~ 15186504 (-)
G17171 appbp2,LOC105940701,LOC102788179 non-coding upstream 177539 15314152 ~ 15317886 (-)
caln1 caln1,LOC103372560,LOC107097061 other downstream 808246 14247928 ~ 14322833 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other downstream 1044315 14078577 ~ 14086764 (-)
G16880 NA other downstream 1308022 13755949 ~ 13823057 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other downstream 1368711 13662907 ~ 13762368 (-)
si:ch1073-145m9.1 LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711 other upstream 182227 15318840 ~ 15325799 (-)
lyrm9 lyrm9 other upstream 510028 15646641 ~ 15651047 (-)
G17287 NA other upstream 558941 15695554 ~ 15719041 (-)
sdhdb sdhd other upstream 909395 16046008 ~ 16060408 (-)
G17597 NA other upstream 1711548 16848161 ~ 16930994 (-)

Expression


Co-expression Network