si:ch1073-145m9.1 (LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711)


Basic Information

Item Value
gene id si:ch1073-145m9.1
gene name LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15318840 ~ 15325799 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU23456
gttcttttaatacatccacgcGTGGACAAATACACATGGATGTAGAGACCTATTACAGGgataaaagcatgaatatatCCATGGCTGTACGACAACTGTGCGTGTTTTCATAGCTAGATATGTAGGTCGGTTTATAAAGCAGGttgcatcttgtttttttttccgggATTAGGCGCCACTGTACCACTCATAATTGATCGAAGATGGGACTCCAAGTTCTGCTGTGGTGGCCGAATATTATCGGATACATTAGGATTGGCCTTGTGTTTGCTGCATGGGCTGCCTATAAGACGCCAGCaatctttgtctctctttaCTCAATCTCCATAGCACTAGATGGAGTGGACGGCTGGCTGGCAAGGAGGCTGGGTCAGACCTCCAGGTTTGGAGCCTGGCTGGATGTAGTGGTGGACAACCTGGGCAGAGGCATGCTGTGGAGCCTGCTGTTTAAGATCTAGAAAAGGTCATCCATGCTTTCATCTCCTCCAGACTTGACTATTGCCGCACACCTGATCTGTGTCAGCAGGCGAAACATCCAAAGACTTCTACAAAACACTGCTGCCAGGCTTTTAACCCGTTCTGAGAGAAGCGACCACATCACACCAATCTGGGAAAACCTTTTTTCTTTATGGACCTATGCAGGCGTAGCAGTGCTGCCATGTAGCTTGCAACACTAGAGTGCGCAGTTGTGACCATGTTGGCTAGTGTGACTCTGTTCATGGTGTTAAACAGGAACAGAGACTATTATAGTATGAGAGCATTTATGTAGGAGAGACCTTGTGAATGCTTTGTTTCTAATAATGGCAGGGAGGTTATCCAGATGT
>XM_039821276.1
taaactaaagaagaagaagaaaccagGCTCgttcttttaatacatccacgcGTGGACAAATACACATGGATGTAGAGACCTATTACAGGgataaaagcatgaatatatCCATGGCTGTACGACAACTGTGCGTGTTTTCATAGCTAGATATGTAGGTCGGTTTATAAAGCAGGttgcatcttgtttttttttccgggATTAGGCGCCACTGTACCACTCATAATTGATCGAAGATGGGACTCCAAGTTCTGCTGTGGTGGCCGAATATTATCGGATACATTAGGATTGGCCTTGTGTTTGCTGCATGGGCTGCCTATAAGACGCCAGCaatctttgtctctctttaCTCAATCTCCATAGCACTAGATGGAGTGGACGGCTGGCTGGCAAGGAGGCTGGGTCAGACCTCCAGGTTTGGAGCCTGGCTGGATGTAGTGGTGGACAACCTGGGCAGAGGCATGCTGTGGAGCCTGCTGTTTAAGTGGGGTTGGCTGGTGTCTGCCTTGGAGtggtgcgtgtttgtgtgtaaccACAATGCCAGAGGTGACCACTGGAAGAACAGTTTCATCACCAGTCCTCGATTCATACAAGCCATCATGGCAAACGGGTTTCGGACACCTCTTGGCACATGGGTGGTGAGTGGGCTGCACTGCCTCCCCCTGTGGCTGTATGGGTATCAGTGGGGCTTACTATCCCACTGGCTGTATCTGCCTCCCTGGATCCAGGCTGCGGGGAccctgctgctggctgcaggcCGCCTGCTGGCTCTATCGGTGGAGATATGGTGTATATGGACACACATCGAATACCTCACCAATGATGAGCCGGAAGAGAAAAAGAACTGAAAGCCACTCAGCAATCTAGAAAAGGTCATCCATGCTTTCATCTCCTCCAGACTTGACTATTGCCGCACACCTGATCTGTGTCAGCAGGCGAAACATCCAAAGACTTCTACAAAACACTGCTGCCAGGCTTTTAACCCGTTCTGAGAGAAGCGACCACATCACACCAATCTGGGAAAACCTTTTTTCTTTATGGACCTATGCAGGCGTAGCAGTGCTGCCATGTAGCTTGCAACACTAGAGTGCGCAGTTGTGACCATGTTGGCTAGTGTGACTCTGTTCATGGTGTTAAACAGGAACAGAGACTATTATAGTATGAGAGCATTTATGTAGGAGAGACCTTGTGAATGCTTTGTTTCTAATAATGGCAGGGAGGTTATCCAGATGTCATTACTGGTGCCTTGCAATAAAATGCTGAAACACA
>XR_005641363.1
aaactaaagaagaagaagaaaccagGCTCgttcttttaatacatccacgcGTGGACAAATACACATGGATGTAGAGACCTATTACAGGgataaaagcatgaatatatCCATGGCTGTACGACAACTGTGCGTGTTTTCATAGCTAGATATGTAGGTCGGTTTATAAAGCAGGttgcatcttgtttttttttccgggATTAGGCGCCACTGTACCACTCATAATTGATCGAAGATGGGACTCCAAGTTCTGCTGTGGTGGCCGAATATTATCGGATACATTAGGATTGGCCTTGTGTTTGCTGCATGGGCTGCCTATAAGACGCCAGCaatctttgtctctctttaCTCAATCTCCATAGCACTAGATGGAGTGGACGGCTGGCTGGCAAGGAGGCTGGGTCAGACCTCCAGGTTTGGAGCCTGGCTGGATGTAGTGGTGGACAACCTGGGCAGAGGCATGCTGTGGAGCCTGCTGTTTAAGTGGGGTTGGCTGGTGTCTGCCTTGGAGtggtgcgtgtttgtgtgtaaccACAATGCCAGAGGTGACCACTGGAAGAACAGTTTCATCACCAGTCCTCGATTCATACAAGCCATCATGGCAAACGGGTTTCGGACACCTCTTGGCACATGGGTGGTGAGTGGGCTGCACTGCCTCCCCCTGTGGCTGTATGGGTATCAGTGGGGCTTACTATCCCACTGGCTGTATCTGCCTCCCTGGATCCAGGCTGCGGGGAccctgctgctggctgcaggcCGCCTGCTGGCTCTATCGGTGGAGATATGGTGTATATGGACACACATCGAATACCTCACCAATGATGAGCCGGAAGAGAAAAAGAACTGAAAGCCACTCAGCAGTCAGTGAAACTGTCCTAACGCGTGGCTggtttagctcagttggtagagcaggcgcacatatatagaggtttactcctcgatgcagtggccgcagATCTAGAAAAGGTCATCCATGCTTTCATCTCCTCCAGACTTGACTATTGCCGCACACCTGATCTGTGTCAGCAGGCGAAACATCCAAAGACTTCTACAAAACACTGCTGCCAGGCTTTTAACCCGTTCTGAGAGAAGCGACCACATCACACCAATCTGGGAAAACCTTTTTTCTTTATGGACCTATGCAGGCGTAGCAGTGCTGCCATGTAGCTTGCAACACTAGAGTGCGCAGTTGTGACCATGTTGGCTAGTGTGACTCTGTTCATGGTGTTAAACAGGAACAGAGACTATTATAGTATGAGAGCATTTATGTAGGAGAGACCTTGTGAATGCTTTGTTTCTAATAATGGCAGGGAGGTTATCCAGATGTCATTACTGGTGCCTTGCAATAAAATGCTGAAACACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104930674

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23456 False 824 lncRNA 0.40 4 15318876 15325769
XM_039821276.1 False 1266 mRNA 0.48 7 15318840 15325799
XR_005641363.1 True 1360 transcript 0.49 7 15318840 15325798

Neighbor

gene id symbol gene type direction distance location
ppm1da ppm1d coding downstream 26625 15282746 ~ 15292215 (-)
brip1 LOC104966431 coding downstream 36925 15187451 ~ 15281915 (-)
opa3 opa3,LOC102789315 coding downstream 541463 14775034 ~ 14777377 (-)
LOC120547856 hnrnpul1 coding downstream 546052 14758259 ~ 14772788 (-)
ryr1b LOC103368738 coding downstream 583611 14649516 ~ 14735229 (-)
sgsm2 sgsm2 coding upstream 212854 15538653 ~ 15624260 (-)
tnfaip1 tnfaip1 coding upstream 300291 15626090 ~ 15637956 (-)
LOC120570576 LOC104937503,LOC103370335,LOC101474512 coding upstream 325674 15651473 ~ 15682792 (-)
LOC120549823 NA coding upstream 370005 15695804 ~ 15698453 (-)
LOC120549813 NA coding upstream 377180 15702979 ~ 15706276 (-)
G17171 appbp2,LOC105940701,LOC102788179 non-coding downstream 954 15314152 ~ 15317886 (-)
G17163 NA non-coding downstream 132336 15185657 ~ 15186504 (-)
G17162 NA non-coding downstream 133273 15184648 ~ 15185567 (-)
G17161 tbx4 non-coding downstream 134319 15183740 ~ 15184521 (-)
G17132 NA non-coding downstream 179507 15139134 ~ 15139333 (-)
G17221 NA non-coding upstream 67407 15393206 ~ 15393420 (-)
G17222 NA non-coding upstream 70303 15396102 ~ 15396339 (-)
G17225 ulk2,LOC104954052 non-coding upstream 108415 15434214 ~ 15441510 (-)
G17253 NA non-coding upstream 208077 15533876 ~ 15535227 (-)
G17264 NA non-coding upstream 316204 15642003 ~ 15642990 (-)
caln1 caln1,LOC103372560,LOC107097061 other downstream 996007 14247928 ~ 14322833 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other downstream 1232076 14078577 ~ 14086764 (-)
G16880 NA other downstream 1495783 13755949 ~ 13823057 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other downstream 1556472 13662907 ~ 13762368 (-)
G16871 blvrb other downstream 1610800 13701643 ~ 13708040 (-)
lyrm9 lyrm9 other upstream 320842 15646641 ~ 15651047 (-)
G17287 NA other upstream 369755 15695554 ~ 15719041 (-)
sdhdb sdhd other upstream 720209 16046008 ~ 16060408 (-)
G17597 NA other upstream 1522362 16848161 ~ 16930994 (-)
xaf1 LOC107094331 other upstream 2147148 17472947 ~ 17478903 (-)

Expression


Co-expression Network