XLOC_004771 (etv4)


Basic Information

Item Value
gene id XLOC_004771
gene name etv4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27536095 ~ 27568694 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009437
AAATGAAGCAAAGAAGAGGTCTCGAGCTGTCCAAACAGTGATTTAGCAGagcctagagtgtgtgtgtttatacgcaCGCTGGTGGTTTTTTTGTGAATGGAGCTCATTACGTATGCAGCCTTCTCGCGCTCCATTCACAAACtaccgctgctgctgctgcctcTGTCCGTCTTCCTTCCCCTCTCAGTCTGCGTGGAGCTCATTAAAACACAGCCTAAATGACCACAAACGGTTAAGGCATGGATTATAAGATGGATGGATATCTGGACCAGCAAGTGCCTTATACTTTAGCTAATAGGTCGCAAGGAAATGGGCCCCTAAATAGACTGTTGATGGCGACAAAAAGGAAATACATGGACGCAGAATTACCCCCTCAGGAATCTGAAGACCTCTTTCAGGATTTAAGCCAACTTCAGGAGACCTGGCTCACCGAAGCTCAAGTTCCTGACAGCGATGAGCAGTTTGTTCCTGACTTTCACTCAGAGAACTCAGTGGCATTCCACAGCCCGCCTGTGAAGATTAAGAAAGAGCCGCAGAGTCCCGGATCAGACCCCAGCCAGTCCTGCAGCCACAAGCAAAGCTTCAGCTACCCCAATGGAGAGCAGTGCCTTTACGCCAGTGCCTATGAGCAGAAGAGAGCAGCCGTGGCAGGAGCAGGAGGATCTAAGAGCTCATGTCCAGGGACGCCCATGTCCCCTATGCAGCATTATTCCCCCAAACCAACAGTGGGAACTCGGCAGGAATCAGGGTATATGAATCCACCCTCAGCCAGCCAATCCCACGCCTGCCACAGCCACAGTTACCCCATGAACCCCagTTCCAGGTTCCCTTCCGGCTCGGCAGAGATGTGCCCACCATTCGCTTCCCAAGGCCAGGCCCTGCAGCGCATGCATCCTGCCCATGCCAGCGGAGGCGGAGGAGGCGGTTACCATCGGCAACACTCTGACCCCTGCTTGCCTTATCCTCCTCAGCAGACCTTTAAGCAGGAGTACATGGACCCTCTGTATGACCGAGCGGCCCACATTAACGGACCACAGCCTCAGAGGTTTCCTCCTGCCCATATGATGGTCAAACAGGAGCCCACCGACTACACTTACGAACCTGATGTGCCTGGCTGCCCATCCATGTACCATCACAACGAAGGCTACTCCAACCCACAGCACAACAGTGAAGGCTACATGTTTGAAAATGATTCCCGTGTTGTGCCAGAGAAATTTGAAGGTGAGGTGAAACAAGAAGGGGGCAGTGTGTTTCGTGAAGGTGCCCCCTATCAGCGTCGTGGCTCACTTCAACTATGGCAGTTCTTGGTTGCCCTTCTTGATGACCCCAGCAATGCCCACTTCATCGCATGGACGGGCCGTGGCATGGAATTCAAACTCATTGAGCCAGAGGAGGTGGCAAGACTCTGGGGGATGCAGAAGAACCGTCCAGCCATGAACTATGACAAACTGAGTCGCTCTTTGCGTTACTATTATGAGAAGGGAATTATGCAAAAGGTGGCTGGTGAGCGTTATGTTTACAAATTTGTGTGTGAGCCAGAAGCTTTGATATCCTTGGCTTTTCCCGACAATCAGCGGCCAAGTCTGAAGGCGGAATTTGAGCGCTACGTCAACGAGGAGGACACTGTGCCACTGTCCCACCTCGATGAGGGAGTTTCTTACCCTCCCGAACCAGCTGCCACCAACATGGGCCCTCAGCCCTACTCCAAAGGCTACATGTACTAATGCCACCGACATTCTCCTTTGTTTCCCATCCCAGTTTACCACCCGCTGCACCTATTGCACATGCCCACCCCATCCTCTTGTATATAAGgctatgttttatgtttttgttttgattaaattaatCTCATTAGGGACTCTGCATTCCTCTCACTTCTGAGGCCTATCTAATCTAAACACAATACTGTGGTTCAAGAGATTGCTTAATAAAACCCAATATTACTACTATAAAACGA
>TCONS_00009438
TTCCCCTCTCAGTCTGCGTGGAGCTCATTAAAACACAGCCTAAATGACCACAAACGGTTAAGGCATGGATTATAAGATGGATGGATATCTGGACCAGCAAGTGCCTTATACTTTAGCTAATTTTCTGTTTTGTAGAGGTCGCAAGGAAATGGGCCCCTAAATAGACTGTTGATGGCGACAAAAAGGAAATACATGGACGCAGAATTACCCCCTCAGGAATCTGAAGACCTCTTTCAGGATTTAAGCCAACTTCAGGAGACCTGGCTCACCGAAGCTCAAGTTCCTGACAGCGATGAGCAGTTTGTTCCTGACTTTCACTCAGAGAACTCAGTGGCATTCCACAGCCCGCCTGTGAAGATTAAGAAAGAGCCGCAGAGTCCCGGATCAGACCCCAGCCAGTCCTGCAGCCACAAGCAAAGCTTCAGCTACCCCAATGGAGAGCAGTGCCTTTACGCCAGTGCCTATGAGCAGAAGAGAGCAGCCGTGGCAGGAGCAGGAGGATCTAAGAGCTCATGTCCAGGGACGCCCATGTCCCCTATGCAGCATTATTCCCCCAAACCAACAGTGGGAACTCGGCAGGAATCAGGGTATATGAATCCACCCTCAGCCAGCCAATCCCACGCCTGCCACAGCCACAGTTACCCCATGAACCCCagTTCCAGGTTCCCTTCCGGCTCGGCAGAGATGTGCCCACCATTCGCTTCCCAAGGCCAGGCCCTGCAGCGCATGCATCCTGCCCATGCCAGCGGAGGCGGAG
>TCONS_00009439
ACCTCTTTCAGGATTTAAGCCAACTTCAGGAGACCTGGCTCACCGAAGCTCAAGTTCCTGACAGCGATGAGCAGTTTGTTCCTGACTTTCACTCAGAGAACTCAGTGGCATTCCACAGCCCGCCTGTGAAGATTAAGAAAGAGCCGCAGAGTCCCGGATCAGACCCCAGCCAGTCCTGCAGCCACAAGCAAAGCTTCAGCTACCCCAATGGAGAGCAGTGCCTTTACGCCAGTGCCTATGAGCAGAAGAGAGCAGCCGTGGCAGGAGCAGGAGGATCTAAGAGCTCATGTCCAGGGACGCCCATGTCCCCTATGCAGCATTATTCCCCCAAACCAACAGTGGGAACTCGGCAGGAATCAGGGTATATGAATCCACCCTCAGCCAGCCAATCCCACGCCTGCCACAGCCACAGTTACCCCATGAACCCCagTTCCAGGTTCCCTTCCGGCTCGGCAGAGATGTGCCCACCATTCGCTTCCCAAGGCCAGGCCCTGCAGCGCATGCATCCTGCCCATGCCAGCGGAGGCGGAGGAGGCGGTTACCATCGGCAACACTCTGACCCCTGCTTGCCTTATCCTCCTCAGCAGACCTTTAAGCAGGAGTACATGGACCCTCTGTATGACCGAGCGGCCCACATTAACGGACCACAGCCTCAGAGGTTTCCTCCTGCCCATATGATGGTCAAACAGGAGCCCACCGACTACACTTACGAACCTGCAGATGTGCCTGGCTGCCCATCCATGTACCATCACAACGAAGGCTACTCCAACCCACAGCACAACAGTGAAG

Function

symbol description
etv4 Enables sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within limb morphogenesis and pronephric nephron tubule epithelial cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including fin; head; mesoderm; nervous system; and neural keel. Orthologous to human ETV4 (ETS variant transcription factor 4).

GO:

id name namespace
GO:0035778 pronephric nephron tubule epithelial cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048793 pronephros development biological_process
GO:0035108 limb morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-990415-71 Enables sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within limb morphogenesis and pronephric nephron tubule epithelial cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including fin; head; mesoderm; nervous system; and neural keel. Orthologous to human ETV4 (ETS variant transcription factor 4).

Ensembl:

ensembl_id ENSDARG00000018303

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009437 False 1957 mRNA 0.51 12 27536095 27568694
TCONS_00009438 False 757 mRNA 0.53 7 27536270 27559645
TCONS_00009439 True 789 mRNA 0.57 6 27537357 27563493

Neighbor

gene id symbol gene type direction distance location
XLOC_004770 meox1 coding upstream 66828 27462225 ~ 27469267 (+)
XLOC_004769 sost coding upstream 200443 27331324 ~ 27335652 (+)
XLOC_004768 dusp3a coding upstream 230272 27285994 ~ 27305823 (+)
XLOC_004767 arl4d coding upstream 290338 27243059 ~ 27245757 (+)
XLOC_004766 tmem106a coding upstream 299063 27231212 ~ 27237032 (+)
XLOC_004772 spata20 coding downstream 20913 27589607 ~ 27665591 (+)
XLOC_004773 cacna1g coding downstream 135321 27704015 ~ 28073562 (+)
XLOC_004774 CABZ01027646.1 coding downstream 548671 28117365 ~ 28181720 (+)
XLOC_004775 LO017791.1 coding downstream 730165 28298859 ~ 28299929 (+)
XLOC_004776 cdk5r1b coding downstream 798863 28367557 ~ 28370484 (+)
XLOC_004762 dre-mir-10a non-coding upstream 401128 27134869 ~ 27134967 (+)
XLOC_004754 BX469896.1 non-coding upstream 639479 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 701903 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 844044 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 942797 26589644 ~ 26593298 (+)
XLOC_004777 NA non-coding downstream 808336 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1049007 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1364830 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1444879 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 1743871 29312565 ~ 29373414 (+)

Expression


Co-expression Network