LOC120575525


Basic Information

Item Value
gene id LOC120575525
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21085093 ~ 21086875 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU25179
AGGTAACATCGTTTAGGTGAGGTTTATCTACGTatgttacctgtgtgtttgtgagtctcTTTGTTCACTTGTTTGGGAAAGCGCACAAGCAGGAGTCACGATGGATTGCGGTTCAAAGAAGAAGGATAAGGGAGAGTGCAAAGACAAGTCTGGAGGTAAGGACAAGCCAAAGGACAAAGGCAAAGACCACAAGATgaaggacaaaaagaaaaaggaaaagaaggagGGGAAAAAATCCGGCGACTCATCTTCATCAAATTATATTTAGTCAAAAAGGATCGAGCTTCTGTAGAACATCCAAAACAAGTCTTAACAGCAGTGAAAGTTTTAATCAGATGTGACGCAACCACAACCGCTTCCTGCGTGTATgcgttttttatttaattatagaTGTCATGTGAAAACCTTCCAGATCTGCAGATTCGTTTTGATTTATTAACCTGCAGCTGAACTCCGAGCAACTTCTACTATCTTATCACCTATGTTCCCCTTAAATTCATTTCACTTTGTTGCAGTTTTATTCAGAGGAAACAGAACCTGTTGGTCACATTTGTATAAATAAGGTTTTTCCATGTAAGTGACTGAAGCCAAAGGGAAACCGGTCAGATAGGAGCGTCATAAAGAAgcttttgttgtataatcaccTCCATGAAAGTGAACACCCTGCAGTTATACCTGTCATACACTCCCTAACGTTTCTGCTCCAAAAATGAATGTCATTTTGGCGTTTGTTACGGCTCGTGCTGCTGCCACAGAGATTCACTCATTAAAGATACAGAAGGAGCTGTGGCACTTGAGATGTTATTTAATAAACCATGTATCTTTTCTGCAGTAACAGCATTGTCCtttttgtcatttcaggaaTGATGCTTCCTGGGGGGACCGGACTGCTCTTAGTCTTTTATGATGTTGTCTATTGACAAAAGGACTGCAGTAGTTCTTTTTCTTCCTGTCCTTTTATTTGTGTCATGAAAACATGGTGTTGTGTAAACAAGTCTGCTGATTCctagaaataaatgttttcccTCAActtatgtcaaataaagtgtgttttcttCACCACAAGATGACATCGTTATCTATTTTTAAGGTTTATCAAAGTCCAAGTAGATTAAAG
>TU25180
AGGTAACATCGTTTAGGTGAGGTTTATCTACGTatgttacctgtgtgtttgtgagtctcTTTGTTCACTTGTTTGGGAAAGCGCACAAGCAGGAGTCACGATGGATTGCGGTTCAAAGAAGAAGGATAAGGGAGAGTGCAAAGACAAGTCTGGAGGTAAGGACAAGCCAAAGGACAAAGGCAAAGACCACAAGATgaaggacaaaaagaaaaaggaaaagaaggagGGGAAAAAATCCGGCGACTCATCTTCATCCAGCAGTGAAAGTTTTAATCAGATGTGACGCAACCACAACCGCTTCCTGCGTGTATgcgttttttatttaattatagaTGTCATGTGAAAACCTTCCAGATCTGCAGATTCGTTTTGATTTATTAACCTGCAGCTGAACTCCGAGCAACTTCTACTATCTTATCACCTATGTTCCCCTTAAATTCATTTCACTTTGTTGCAGTTTTATTCAGAGGAAACAGAACCTGTTGGTCACATTTGTATAAATAAGGTTTTTCCATGTAAGTGACTGAAGCCAAAGGGAAACCGGTCAGATAGGAGCGTCATAAAGAAgcttttgttgtataatcaccTCCATGAAAGTGAACACCCTGCAGTTATACCTGTCATACACTCCCTAACGTTTCTGCTCCAAAAATGAATGTCATTTTGGCGTTTGTTACGGCTCGTGCTGCTGCCACAGAGATTCACTCATTAAAGATACAGAAGGAGCTGTGGCACTTGAGATGTTATTTAATAAACCATGTATCTTTTCTGCAGTAACAGCATTGTCCtttttgtcatttcaggaaTGATGCTTCCTGGGGGGACCGGACTGCTCTTAGTCTTTTATGATGTTGTCTATTGACAAAAGGACTGCAGTAGTTCTTTTTCTTCCTGTCCTTTTATTTGTGTCATGAAAACATGGTGTTGTGTAAACAAGTCTGCTGATTCctagaaataaatgttttcccTCAActtatgtcaaataaagtgtgttttcttCACCACAAGATGACATCGTTATCTATTTTTAAGGTTTATCAAAGTCCAAGTAGATTAAAG
>XR_005642012.1
GAATGTTTAACCTAGAGGGAGCAGTGGTTAAGGGGTGGGGTTATGTGAGGTAACATCGTTTAGGTGAGGTTTATCTACGTatgttacctgtgtgtttgtgagtctcTTTGTTCACTTGTTTGGGAAAGCGCACAAGCAGGAGTCACGATGGATTGCGGTTCAAAGAAGAAGGATAAGGGAGAGTGCAAAGACAAGTCTGGAGGTAAGGACAAGCCAAAGGACAAAGGCAAAGACCACAAGATgaaggacaaaaagaaaaaggaaaagaa

Function

GO:

id name namespace
GO:0046930 pore complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25179 True 1117 lncRNA 0.39 3 21085093 21086828
TU25180 False 1059 lncRNA 0.40 4 21085093 21086828
XR_005642012.1 False 269 lncRNA 0.44 3 21085988 21086875

Neighbor

gene id symbol gene type direction distance location
igsf11 igsf11,LOC102790613 coding downstream 4318 20963840 ~ 21080775 (-)
LOC120574226 lsamp,LOC106534328 coding downstream 136114 20225831 ~ 20948979 (-)
sidt2 sidt2 coding downstream 1006950 20059933 ~ 20078143 (-)
LOC120550021 NA coding downstream 1054305 20028341 ~ 20030788 (-)
LOC120550005 tbx10,LOC104965412 coding downstream 1057296 20023847 ~ 20027797 (-)
LOC120573880 NA coding upstream 11065 21097940 ~ 21108764 (-)
git1 git1,LOC102788862 coding upstream 34989 21121864 ~ 21151383 (-)
ssh2a ssh2,ssh2a coding upstream 108513 21195388 ~ 21227407 (-)
blmh blmh coding upstream 180829 21267704 ~ 21290294 (-)
rap1gap2a rap1gap2,LOC102786908 coding upstream 208474 21295349 ~ 21405528 (-)
G18391 NA non-coding downstream 147844 20936993 ~ 20937249 (-)
G18385 NA non-coding downstream 197064 20887806 ~ 20888029 (-)
G18382 NA non-coding downstream 311171 20773635 ~ 20773922 (-)
G18381 NA non-coding downstream 378308 20706521 ~ 20706785 (-)
G18366 NA non-coding downstream 827038 20184811 ~ 20258055 (-)
G18429 NA non-coding upstream 26497 21113372 ~ 21115994 (-)
G18492 NA non-coding upstream 324033 21410908 ~ 21411199 (-)
G18591 NA non-coding upstream 440580 21527455 ~ 21583403 (-)
LOC120572042 NA non-coding upstream 443122 21529997 ~ 21532755 (-)
G18626 NA non-coding upstream 546105 21632980 ~ 21695722 (-)
LOC120547993 NA other downstream 943555 20137072 ~ 20141538 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 1274963 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 1367786 19701227 ~ 19717307 (-)
LOC120545639 eif4g1 other downstream 2862200 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 2933125 18127466 ~ 18151968 (-)
si:ch1073-340i21.1 NA other upstream 7302 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 150313 21237188 ~ 21261923 (-)
LOC120572205 NA other upstream 523939 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 577201 21664076 ~ 21710363 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 896427 21983302 ~ 22007175 (-)

Expression


Co-expression Network