slc6a4a (slc6a4,LOC103359260,LOC108228506)


Basic Information

Item Value
gene id slc6a4a
gene name slc6a4,LOC103359260,LOC108228506
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21237188 ~ 21261923 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU25281
GCAGAATACGGCCTGCTGTAAGCCCAGGCATGTGTGATTTGTGTGATTGGGTTTAGACTGCGTTGATAGGCGACGTCTTGGACACTAGATGACCAGACGCTCCATGGACAACGCAAGCTGTCATGCTAAAAATATCAAGttTGCCCCATCACTGAGTGTCTTAGAGGACGAGCAGTTTGAGGAGAAGATCCACACTTTTCTGCTGGCCACATCCTGTTCAAACACATCACTCTGCTCGTATATCCTCCGCTGTCTGTCCTCACAGCCTGCTTTTATTCCTTCTTGCTCAACAGACTCTTACACATTTCAGTCTTctcctacatacacacacccacatacactcACCTCCCCTCACCcgttctcatttttttttattttttttttttttaagctctgCTCTCCTGCTCTCCTGTTCCCCTTCTTCTTTACCTGTCCCTTGCTTTCCTAACCCCTCTGTTCCCCTAATGGGCACCATATCAGACAGCAGTGCCACATTCCCTTCATTGTCACTGAGAACCTCCCTCCACCCCTAACCGCCTCGCCAACGCCAACATCAACACGATCCAATGGAGACAAATGATATGATGCTGACGAGCATGTTGACAATGGATAAAAGAGAGaatgagggagagagggagaaaggaagagaggaggtgGGGGGAGAAGCGGAGGGAACACAGCAGGAACATAGTAGGCCGATGCTGGCTGATGGTCTCGCAGAGAGAGGACCCAAGAGCCTGATCTCCGGTTCTGGACAGCAGGTGTCCAATGGCTTCACCACATCCACTCCTCAAAGCCCCAGGGAGGGACCGGGGAGCGCAGCTTTTTCTGGAGGAACATCCTCTGTACCTGGAGGAGGCACCGGGTCCTCAGTGCCGCTTGGAGGCCTCAGGACTCTGGTGGTCCAACAAACCAGCTTGGAGAAGCCCAGAGAAACCTGGAGCAAGAAGATGGACTTCTTGCTCTCTGTGATCGGCTATGCGGTGGACCTGGGAAATGTCTGGCGCTTCCCTTACATCTGCTACCAAAATGGAGGAGGTGCCTTTTTGCTGCCCTACCTGTTGATGGCGGTGTTTGGAGGTGTCCCTCTCTTCTACATGGAGCTGGCTCTTGGCCAATTCCACCGCAGCGGCTGCATCTCCATCTGGAAACACATCTGCCCCATCTTCAAAGGGATCGGCTTTGCCATTTGCATTATATCCCTCTACATATCCTTCTACTACAACACCATCATGGCCTGGGCCTTGTACTATCTACTGTCATCGTTCCGACCCACCCTGCCCTGGACCACCTGCGCCAACAGCTGGAACACAGTCAACTGTAAACATTACATGTCCACCGATCACAATGTGTCGTGGTCCAACTCCTCCACCTCCCCCGCCGAGGAGTTCTATATTCGCCAGGTTCTGCAGGTCCACCTCTCCCCAGGTCTGCACCAGCTGGGCTCTGTCAGCTGGCAGCTGGCCCTCTGCCTGCTCTTCATCTTCACCATCGTCTACTTCAGCATCTGGAAAGGAGTCAAGACGTCTGGAAAGGTA
>XM_039788819.1
agagaggttTGAGAGCTCAATGGGAAAACACTGTGTCCTGATGTGCTAGTGCACGCTGTGTCTCTTGCAAGTTTTTGCAACACCACAGGATTCTTTAAGTTTTGGGTAgaagttgctgctgctgctgctgctggtttaGCAGGTTCTACTTGTCCTCATTTACCATCTTTTAAGttTGCCCCATCACTGAGTGTCTTAGAGGACGAGCAGTTTGAGGAGAAGATCCACACTTTTCTGCTGGCCACATCCTGTTCAAACACATCACTCTGCTCGTATATCCTCCGCTGTCTGTCCTCACAGCCTGCTTTTATTCCTTCTTGCTCAACAGACTCTTACACATTTCAGTCTTctcctacatacacacacccacatacactcACCTCCCCTCACCcgttctcatttttttttattttttttttttttaagctctgCTCTCCTGCTCTCCTGTTCCCCTTCTTCTTTACCTGTCCCTTGCTTTCCTAACCCCTCTGTTCCCCTAATGGGCACCATATCAGACAGCAGTGCCACATTCCCTTCATTGTCACTGAGAACCTCCCTCCACCCCTAACCGCCTCGCCAACGCCAACATCAACACGATCCAATGGAGACAAATGATATGATGCTGACGAGCATGTTGACAATGGATAAAAGAGAGaatgagggagagagggagaaaggaagagaggaggtgGGGGGAGAAGCGGAGGGAACACAGCAGGAACATAGTAGGCCGATGCTGGCTGATGGTCTCGCAGAGAGAGGACCCAAGAGCCTGATCTCCGGTTCTGGACAGCAGGTGTCCAATGGCTTCACCACATCCACTCCTCAAAGCCCCAGGGAGGGACCGGGGAGCGCAGCTTTTTCTGGAGGAACATCCTCTGTACCTGGAGGAGGCACCGGGTCCTCAGTGCCGCTTGGAGGCCTCAGGACTCTGGTGGTCCAACAAACCAGCTTGGAGAAGCCCAGAGAAACCTGGAGCAAGAAGATGGACTTCTTGCTCTCTGTGATCGGCTATGCGGTGGACCTGGGAAATGTCTGGCGCTTCCCTTACATCTGCTACCAAAATGGAGGAGGTGCCTTTTTGCTGCCCTACCTGTTGATGGCGGTGTTTGGAGGTGTCCCTCTCTTCTACATGGAGCTGGCTCTTGGCCAATTCCACCGCAGCGGCTGCATCTCCATCTGGAAACACATCTGCCCCATCTTCAAAGGGATCGGCTTTGCCATTTGCATTATATCCCTCTACATATCCTTCTACTACAACACCATCATGGCCTGGGCCTTGTACTATCTACTGTCATCGTTCCGACCCACCCTGCCCTGGACCACCTGCGCCAACAGCTGGAACACAGTCAACTGTAAACATTACATGTCCACCGATCACAATGTGTCGTGGTCCAACTCCTCCACCTCCCCCGCCGAGGAGTTCTATATTCGCCAGGTTCTGCAGGTCCACCTCTCCCCAGGTCTGCACCAGCTGGGCTCTGTCAGCTGGCAGCTGGCCCTCTGCCTGCTCTTCATCTTCACCATCGTCTACTTCAGCATCTGGAAAGGAGTCAAGACGTCTGGAAAGATCTTCTTCTCACTGGGTCCAGGGTTCGGCGTGCTCCTTGCCTTTGCCAGCTACAACCCGTTTCACAACAACTGCTACAAAGATGCTTTGATCACCAGCTCTGTGAACTGTCTGACTAGCTTTCTGTCTGGCTTCGTCATCTTTACCGTGTTGGGCTACATAGCTGAGATGAGGCACCTGGATGTGGATGCTGTGGCCAAGGATGCTGGTCCCAGTCTGCTGTTCATCGTTTATGCAGAAGCCATAGCAAATATGCCTGGTGCTACTTTCTTCGCCATCATCTTCTTCCTCATGATCATTATGCTGGGTCTGGATAGCACGTTTGCGGGGTTGGAGGGGGTGATCACCGCTATGCTCGATGAGTTCCCTCATGTCCTGTCTAAGAGACGAGAGCAGTTTGTCCTAGGCCTGGTGTGCTTTTGCTACCTCGGGGCTCTCTCCACACTCACATATGGAGGAGCATTTGTGGTGAAGCTGTTTGAGGAGTATGCTACAGGCCCTGCAGTCATCACTGTGGTCCTGCTTGAAGTCATCGCCGTTTCCTGGTTCTACGGTACCAACCGTTTCTGTAATGACATCCAGCTCATGCTTGGTTTCTACCCGGGCTTGTTCTGGAGGGTCTGCTGGGTGGCCATCTGCCCCTGCTTTCTGCTGTTCATCGTCATCAGTTTCCTGGCCTTCCCTCCAGAGGTCAAGTTGTTCAAATACCACTTCCCGCCATGGACCACTGTCCTCGGCTACTGCATTGGGGTGTCATCATTCATCTGTGTGCCTGCTTATATGGTCTACCACTTGCTCAATGCCAAGGGAACATTCAAACAGCGTCTCTTGAAGAGTATCACTCCAGAGCCCAGCGGTGAACAACACAGAGACTTCATTGTCACCAATGCAGTCTGACCAAACCCTGACCAAAAGAAGGTGCCAGTCTAGCAACATACAGTGCCCTTTTCTGGACAAACTGCAAAACCACAGGACAAGGGGGCTACCTATCACCGCCTTTGCCTCTTTTTCATACATCTCCTACACTTGTTTTTTAGCTGTCTGACACCAAGATCTAGAAATAGTGGTGGAGTTCGGtggagccaggctgcagtaGATTTATTTAGCCCTGTTTGGTGTGGTTCCTTATGCTGGTTCAGTTTTTAAGGAGTTATCCTGTATCTTTAGCATTAACATCCTCTCTCTATTTGTCTACTCACAGGTGTCACCTAAGGCATTTAGTGACCAACTTTTCTTCAGGTTATACAGTTGTAACAAATATTTTATACAATTATAGAACGTATGATACAATATCTGTCCATGTAGACAGTAAACTGGCGATACTGCACATTGAAATCAGTTGGAGAAGgccaaaaaaatatacattccaATCCTCTCTCAGTTTTTATGGTTGCATTTTCCTATTATGCTGTTAAGTTATGTATTCCAATATGTAGCAAAATTCAGGTTATCTGTTACTAAAGCCAAATATATGATATCTGCTCTGTTCATATTTCTAAAGATGTTTCAGTATTGTAGCTGTCATTATGTTGTGTTGACTATCAGCCTGTGTTTATATGTTGGCATCTTGGGTGAGTGACGGATTTGCAATGAATTCCCTACACTGTGAAGCACACTCTGGTGTCTggtagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaaaaaaaaagactgttaTAATGTCCAGTGGGGAAATGGATCACAGACAGAACCAACCAAGTGTATTCATTCTATAACTGCAAtataaaatgtgtatttattttacaatgtATCATTGCTGTCCTTACGACCTCCAACACTTTTAGTATGACAAACATTACATGTGACATCACATGACATAGTGCTGATGGTCCTTGTTTAATCACAGTGACATTCTGCACTATGTTATCATACTGCTCAACTGTCATTAATAGAAACCAAATATGGATCACAGCTAATAACATTATTAATGGCATCGTCTGAAAATCATCGTTACTGCTCTTTACTTTCTACCAAaacattgtgtgtttgtgtgtgtatgcacatgtgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttctgagAGTGTATGGTAGGAGTAGGAGTTAGAATATGGCGAGTACTGTACATTTACATGTGTATTTACTAGTCAGTCTGGTATTGGTGTAATCTATCCTGTGAatacctctctcctctctccatggatatgtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgagcacCTGGATTAGTGTGTTGGTGCACATATGGGTGGTTGTGTAAAAAGGATTAGAGGTGTTCAGGCCCTTTACGTATGTGTGCATGCCGTGATGTATGTGTATACCGTacttcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgaatggGTGTGTCTGTAATGTGATGTCATGTCTTGTTAACTGCCAAAATATCCAATGAAGGAAATAAACTCCCTCTTGCCTCTCTGTCGTACATCTCTAGCTTATGTAAGTTATATGTATGTCAATAAAAGACTGTATTGAAAAATA

Function

symbol description
slc6a4 Enables serotonin:sodium symporter activity. Involved in regulation of thalamus size; response to toxic substance; and serotonin uptake. Acts upstream of or within monoamine transport. Located in endomembrane system; membrane raft; and plasma membrane. Implicated in several diseases, including alcohol use disorder; alexithymia; anxiety disorder (multiple); heart disease (multiple); and mental depression (multiple). Biomarker of brain disease; chronic fatigue syndrome; diverticulitis; and leishmaniasis.

NR:

description
PREDICTED: sodium-dependent serotonin transporter-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0006837 serotonin transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008144 drug binding molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25281 False 1538 TUCP 0.51 5 21246839 21261923
XM_039788819.1 True 4286 mRNA 0.47 13 21237188 21255311

Neighbor

gene id symbol gene type direction distance location
ssh2a ssh2,ssh2a coding downstream 9781 21195388 ~ 21227407 (-)
git1 git1,LOC102788862 coding downstream 85805 21121864 ~ 21151383 (-)
LOC120573880 NA coding downstream 128424 21097940 ~ 21108764 (-)
igsf11 igsf11,LOC102790613 coding downstream 156413 20963840 ~ 21080775 (-)
LOC120574226 lsamp,LOC106534328 coding downstream 288209 20225831 ~ 20948979 (-)
blmh blmh coding upstream 5781 21267704 ~ 21290294 (-)
rap1gap2a rap1gap2,LOC102786908 coding upstream 33426 21295349 ~ 21405528 (-)
LOC120573852 LOC101479958 coding upstream 155393 21417316 ~ 21435893 (-)
LOC120573817 LOC101479958 coding upstream 181420 21443343 ~ 21462495 (-)
LOC120573866 LOC101481218,LOC101479958 coding upstream 228603 21490526 ~ 21502253 (-)
G18429 NA non-coding downstream 121194 21113372 ~ 21115994 (-)
LOC120575525 NA non-coding downstream 150313 21085093 ~ 21086875 (-)
G18391 NA non-coding downstream 299939 20936993 ~ 20937249 (-)
G18385 NA non-coding downstream 349159 20887806 ~ 20888029 (-)
G18382 NA non-coding downstream 463266 20773635 ~ 20773922 (-)
G18492 NA non-coding upstream 148985 21410908 ~ 21411199 (-)
G18591 NA non-coding upstream 265532 21527455 ~ 21583403 (-)
LOC120572042 NA non-coding upstream 268074 21529997 ~ 21532755 (-)
G18626 NA non-coding upstream 371057 21632980 ~ 21695722 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding upstream 389780 21651703 ~ 21652866 (-)
si:ch1073-340i21.1 NA other downstream 139987 21094177 ~ 21097201 (-)
LOC120547993 NA other downstream 1095650 20137072 ~ 20141538 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 1427058 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 1519881 19701227 ~ 19717307 (-)
LOC120545639 eif4g1 other downstream 3014295 18179013 ~ 18222893 (-)
LOC120572205 NA other upstream 348891 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 402153 21664076 ~ 21710363 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 721379 21983302 ~ 22007175 (-)
G18885 gramd1b other upstream 1877290 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1984680 23246603 ~ 23252420 (-)

Expression


Co-expression Network