LOC120572042


Basic Information

Item Value
gene id LOC120572042
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21529997 ~ 21532755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU25432
CAGCCTAATATGTCAATCATCGTCTTTCTGTACTTTTGTTGGAAGGTCATGACCTATCAGCCAATGTAATTACAATCCCAGGTAGAGGGGCGGGGCTTAGCTGTAACCTGCAGAgatccagtcagagagacagagacgctAAGTGAACGGACTTTGTGAGGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACCAGTTATGCTGTGTTTTGGCATATTGAAATCGACAAGAGGAGACGGacatttgtgactgtaaaagagAGAGGATCGGGGAAGCTCCTTTGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTATTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTACCCGGTGCTCTGTCTGCTGCCATCGCCAAGTTCGCCTTTATATCCCCTTGACTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCAGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGGGGAGGCTGCGGggtcatccattgttttgaaagGTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAAGAAAAGAACCTCCTGAACCATTCCTGCTTAACTCGCCTCCACTGGacctttcacatttttttccatctcaACATCAAACATATTGAACGATACTCtaaaatttatatataaattgcCCAGCCATACGTCAGCCCAAACTTACTTTTCCtgacacatttaacattaactTGTACATAATACATCCTCATACACTGGAGTATCTCATGAGTCCAGATGCCCATCAATACGCTGTTGCACGAGAGGTGAATGACACCAAGATATGGCagttgaagaaaaacaaatgtagagTATGTGATAACAGGACATGCAAATCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTATAGATTGATCGTGCTAGTAACGTTAACTAGCAAGTTGTTCGTTAAGGGCTGACGGCTGGTTAACGTTACGGACAAAAACTATTTGTTCCGTGTATTCTCTTGTGTGTATCACATATccgtctcctctagctgttgtGGTTGATATGATGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAATGTGATGTCACGTGGTCCTTATAAATATATACCAGAAACTATGCACAAAGGACTACTTGCACCCTCGTGCTGCTGAATATTTGATGTATttaataaatgtcatgttttatatctgtcatgcttttgtgtttgtcagtACATTTTTCAGCTTGACATTTTTAGTaatgcatggaataaaaaaaaatgaaaatacttataATGATTTATCATTACAACTTAATGTCCAATTGAATCAAGATCATAAACCATAGTATTTGAATGTGTTGAGGGATCTGACACCTGCTGTTCCTGTGTCAAGGTAAGTCTCCTGAAAGGTCAAATGAAGTATGACACGTATGTTTAATTTAGTTGCTTTATATAGAGCGCTGGTGGGTGTTTTTTGCATAAAGATATGAAAGTAGAG
>XR_005641345.1
TTGATAGCAGCCTAATATGTCAATCATCGTCTTTCTGTACTTTTGTTGGAAGGTCATGACCTATCAGCCAATGTAATTACAATCCCAGGTAGAGGGGCGGGGCTTAGCTGTAACCTGCAGAgatccagtcagagagacagagacgctAAGTGAACGGACTTTGTGAGGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACCAGTTATGCTGTGTTTTGGCATATTGAAATCGACAAGAGGAGACGGacatttgtgactgtaaaagagAGAGGATCGGGGAAGCTCCTTTGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTATTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTACCCGGTGCTCTGTCTGCTGCCATCGCCAAGTTCGCCTTTATATCCCCTTGACTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCAGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGGGGAGGCTGCGGggtcatccattgttttgaaagGTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAAGAAAAGAACCTCCTGAACCATTCCTGCTTAACTCGCCTCCACTGGacctttcacatttttttccatctcaACATCAAACATATTGAACGATACTCtaaaatttatatataaattgcCCAGCCATACGTCAGCCCAAACTTACTTTTCCtgacacatttaacattaactTGTACATAATACATCCTCATACACTGGAGTATCTCATGAGTCCAGATGCCCATCAATACGCTGTTGCACGAGAGGTGAATGACACCAAGATATGGCagttgaagaaaaacaaatgtagagTATGTGATAACAGGACATGCAAATCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTATAGATTGATCGTGCTAGTAACGTTAACTAGCAAGTTGTTCGTTAAGGGCTGACGGCTGGTTAACGTTACGGACAAAAACTATTTGTTCCGTGTATTCTCTTGTGTGTATCACATATccgtctcctctagctgttgtGGTTGATATGATGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAATGTGATGTCACGTGGTCCTTATAAATATATACCAGAAACTATGCACAAAGGACTACTTGCACCCTCGTGCTGCTGAATATTTGATGTATttaataaatgtcatgttttatatctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25432 True 1562 lncRNA 0.36 3 21529997 21532748
XR_005641345.1 False 1282 lncRNA 0.43 3 21530284 21532755

Neighbor

gene id symbol gene type direction distance location
LOC120573840 LOC101479958 coding downstream 1236 21516913 ~ 21528761 (-)
LOC120551403 LOC102783338 coding downstream 15293 21507054 ~ 21514704 (-)
LOC120573866 LOC101481218,LOC101479958 coding downstream 27744 21490526 ~ 21502253 (-)
LOC120573817 LOC101479958 coding downstream 67502 21443343 ~ 21462495 (-)
LOC120573852 LOC101479958 coding downstream 94104 21417316 ~ 21435893 (-)
si:ch211-132b12.7 NA coding upstream 32796 21565551 ~ 21572680 (-)
LOC120553405 cntd2 coding upstream 40574 21573329 ~ 21577861 (-)
akt2 akt2,LOC100707971 coding upstream 47624 21580379 ~ 21599999 (-)
dhx40 dhx40 coding upstream 67774 21600529 ~ 21607740 (-)
LOC120572601 NA coding upstream 75289 21608044 ~ 21610638 (-)
G18492 NA non-coding downstream 118798 21410908 ~ 21411199 (-)
G18429 NA non-coding downstream 414003 21113372 ~ 21115994 (-)
LOC120575525 NA non-coding downstream 443122 21085093 ~ 21086875 (-)
G18391 NA non-coding downstream 592748 20936993 ~ 20937249 (-)
G18385 NA non-coding downstream 641968 20887806 ~ 20888029 (-)
G18626 NA non-coding upstream 100225 21632980 ~ 21695722 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding upstream 118948 21651703 ~ 21652866 (-)
G18669 NA non-coding upstream 287234 21819989 ~ 21878764 (-)
G18758 NA non-coding upstream 615284 22148039 ~ 22148297 (-)
G18770 NA non-coding upstream 655508 22188263 ~ 22188687 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 268074 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 432796 21094177 ~ 21097201 (-)
LOC120547993 NA other downstream 1388459 20137072 ~ 20141538 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 1719867 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 1812690 19701227 ~ 19717307 (-)
LOC120572205 NA other upstream 78059 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 131321 21664076 ~ 21710363 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 450547 21983302 ~ 22007175 (-)
G18885 gramd1b other upstream 1606458 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1713848 23246603 ~ 23252420 (-)

Expression


Co-expression Network